Riken Meta Database

This database portal site is used to provide information on RIKEN's various life science databases
to order to help researchers around the world make full use of RIKEN's research results.

SPARQL
endpoint
RIKEN
Database
Directory
1

Faceted Navigation (for databases with metadata)

  • Species
  • Theme
  • Publisher
  • DataType
ChEBIhttp://metadb.riken.jp/metadb/ontology/ChEBI

Chemical Entities of Biological Interest (ChEBI)
(Original site: http://www.ebi.ac.uk/chebi/)

CLOhttp://metadb.riken.jp/metadb/ontology/CLO

Cell Line Ontology (CLO)
(Original site: http://www.clo-ontology.org)

GOhttp://metadb.riken.jp/metadb/ontology/GO

Gene Ontology (GO)
(Original site: http://geneontology.org)

MAhttp://metadb.riken.jp/metadb/ontology/MA

Mouse Adult Gross Anatomy (MA)
(Original site: http://www.informatics.jax.org/searches/AMA_form.shtml)

MCCVhttp://metadb.riken.jp/metadb/ontology/MCCV

Microbial Culture Collection Vocabulary (MCCV)
(Original site: http://bioportal.bioontology.org/ontologies/MCCV?p=classes)

MPhttp://metadb.riken.jp/metadb/ontology/MP

Mammalian Phenotype (MP)
(Original site: http://www.informatics.jax.org/searches/MP_form.shtml)

NCBITaxonhttp://metadb.riken.jp/metadb/ontology/NCBITaxon

NCBI Organismal Classification (NCBITaxon)
(Original site: http://wiki.obofoundry.org/wiki/index.php/NCBITaxon:Main_Page)

ORDOhttp://metadb.riken.jp/metadb/ontology/ORDO

Orphanet Rare Disease Ontology
(Original site: http://bioportal.bioontology.org/ontologies/ORDO)

PATOhttp://metadb.riken.jp/metadb/ontology/PATO

Phenotypic Quality (PATO)
(Original site: http://wiki.obofoundry.org/wiki/index.php/PATO:Main_Page)

ROhttp://metadb.riken.jp/metadb/ontology/RO

OBO-relation ontology (RO)
(Original site: https://code.google.com/p/obo-relations/)

RShttp://metadb.riken.jp/metadb/ontology/RS

Rat Strain Ontology (RS)
(Original site: http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=RS:0000457)

SIOhttp://metadb.riken.jp/metadb/ontology/SIO

Semanticscience Integrated Ontology
(Original site: http://semanticscience.org)

UBERONhttp://metadb.riken.jp/metadb/ontology/UBERON

Uber Anatomy Ontology (UBERON )
(Original site: http://uberon.github.io)

UOhttp://metadb.riken.jp/metadb/ontology/UO

Units of Measurement (UO)
(Original site: https://code.google.com/p/unit-ontology/)

ZFAhttp://metadb.riken.jp/metadb/ontology/ZFA

Zebrafish Anatomy and Development (ZFA)
(Original site: http://zfin.org/zf_info/anatomy/dict/sum.html)

About RIKEN Meta Database

This database portal site is used to provide information on RIKEN's various life science databases to order to help researchers around the world make full use of RIKEN's research results.

The database provides life-science data in the bases of standardized metadata techniques including semantic web and Resource Description Framework (RDF).

Data statistics
Data statistics
Number of database (graphs) 164
number of triples 102886203
number of classes (concepts) 740
number of instances associated with classes 26982144
number of properties 1141

W3C Dataset Seacriptions: HCLS Cummunity Profile data
HCLSProfile_MataDB_ALL.ttl