with_AGI_gene
<html><body><title>OMAT1P000785</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100007850000i/OMAT1P000785.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100007850000i/OMAT1P000785.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100007850000i/OMAT1P000785.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401090300000i">OMAT4P109030</a></td><td>0.966115</td><td>-</td><td>AT4G31830</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101136200000i">OMAT1P113620</a></td><td>0.965423</td><td>-</td><td>AT1G54860</td><td>unknown protein</td><td>AT1G54870</td><td>binding / catalytic/ oxidoreductase</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200064300000i">OMAT2P006430</a></td><td>0.959589</td><td>-</td><td>-</td><td>-</td><td>AT2G28490</td><td>cupin family protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300145200000i">OMAT3P014520</a></td><td>0.958897</td><td>-</td><td>AT3G53230</td><td>cell division cycle protein 48, putative / CDC48, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500126100000i">OMAT5P012610</a></td><td>0.955586</td><td>-</td><td>AT5G45160</td><td>root hair defective 3 GTP-binding (RHD3) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500037600000i">OMAT5P003760</a></td><td>0.954459</td><td>-</td><td>AT5G11100</td><td>SYTD</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400042800000i">OMAT4P004280</a></td><td>0.95363</td><td>-</td><td>AT4G15396</td><td>CYP702A6</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101086300000i">OMAT1P108630</a></td><td>0.953206</td><td>-</td><td>AT1G27461</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300010800000i">OMAT3P001080</a></td><td>0.952021</td><td>-</td><td>AT3G03320</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200003500000i">OMAT2P000350</a></td><td>0.951855</td><td>-</td><td>AT2G02120</td><td>PDF2.1</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201108100000i">OMAT2P110810</a></td><td>-0.915124</td><td>-</td><td>AT2G42500</td><td>PP2A-4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101510000i">OMAT4P110151</a></td><td>-0.899505</td><td>-</td><td>AT4G34720</td><td>AVA-P1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201070600000i">OMAT2P107060</a></td><td>-0.892602</td><td>-</td><td>AT2G32810</td><td>BGAL9 (Beta galactosidase 9)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300029400000i">OMAT3P002940</a></td><td>-0.890766</td><td>-</td><td>AT3G08550</td><td>KOB1 (KOBITO)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401013000000i">OMAT4P101300</a></td><td>-0.882478</td><td>-</td><td>AT4G04720</td><td>CPK21</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301138900000i">OMAT3P113890</a></td><td>-0.881599</td><td>-</td><td>AT3G56760</td><td>calcium-dependent protein kinase, putative / CDPK, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401097000000i">OMAT4P109700</a></td><td>-0.881089</td><td>-</td><td>AT4G33530</td><td>KUP5</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101169100000i">OMAT1P116910</a></td><td>-0.880675</td><td>-</td><td>AT1G67930</td><td>Golgi transport complex protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500040000000i">OMAT5P004000</a></td><td>-0.877232</td><td>-</td><td>AT5G11710,AT5G11720</td><td>[AT5G11710]epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, [AT5G11720]alpha-glucosidase 1 (AGLU1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401100800000i">OMAT4P110080</a></td><td>-0.874788</td><td>-</td><td>AT4G34490</td><td>ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100007850000i/OMAT1P000785-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>10/200</td><td>3.67</td><td>1.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>10/200</td><td>3.50</td><td>1.56e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0033036</td><td>macromolecule localization</td><td>10/200</td><td>2.89</td><td>7.75e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>12/200</td><td>2.54</td><td>1.01e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009719</td><td>response to endogenous stimulus</td><td>12/200</td><td>2.33</td><td>2.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>21/200</td><td>1.84</td><td>2.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>13/200</td><td>2.20</td><td>2.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>11/200</td><td>2.26</td><td>3.88e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010033</td><td>response to organic substance</td><td>13/200</td><td>1.94</td><td>7.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>11/200</td><td>2.00</td><td>9.82e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>117/200</td><td>1.28</td><td>1.10e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>40/200</td><td>1.65</td><td>5.20e-04</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>23/200</td><td>2.73</td><td>4.29e-06</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>storage</td><td>-</td><td>12/200</td><td>10.56</td><td>1.49e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>seedling</td><td>-</td><td>12/200</td><td>9.11</td><td>9.17e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>15/200</td><td>4.37</td><td>4.29e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>81/200</td><td>1.60</td><td>7.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>reductase</td><td>-</td><td>12/200</td><td>4.40</td><td>4.13e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>14/200</td><td>3.25</td><td>3.19e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>13/200</td><td>2.96</td><td>1.48e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>40/200</td><td>1.69</td><td>2.96e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>40/200</td><td>1.65</td><td>4.92e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>12/200</td><td>2.57</td><td>8.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>31/200</td><td>1.73</td><td>9.50e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>66/200</td><td>1.35</td><td>2.21e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>25/200</td><td>1.71</td><td>3.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>31/200</td><td>1.60</td><td>3.21e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>25/200</td><td>1.70</td><td>3.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>25/200</td><td>1.65</td><td>4.79e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
OMAT1P000785
0.74208200000000001939