0.69628500000000004277
<html><body><title>OMAT1P012960</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100129600000i/OMAT1P012960.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100129600000i/OMAT1P012960.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100129600000i/OMAT1P012960.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100021400000i">OMAT1P002140</a></td><td>0.938598</td><td>-</td><td>AT1G06630</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100003500000i">OMAT1P000350</a></td><td>0.935472</td><td>-</td><td>AT1G01730</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300046200000i">OMAT3P004620</a></td><td>0.934154</td><td>-</td><td>AT3G13224</td><td>RNA recognition motif (RRM)-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300031600000i">OMAT3P003160</a></td><td>0.932757</td><td>-</td><td>AT3G09180</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100203600000i">OMAT1P020360</a></td><td>0.931007</td><td>-</td><td>AT1G71130</td><td>AP2 domain-containing transcription factor, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300046100000i">OMAT3P004610</a></td><td>0.925064</td><td>-</td><td>AT3G13200</td><td>EMB2769 (EMBRYO DEFECTIVE 2769)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100037200000i">OMAT1P003720</a></td><td>0.920836</td><td>-</td><td>AT1G11010,AT1G11020</td><td>[AT1G11010]pre-tRNA, [AT1G11020]zinc finger (C3HC4-type RING finger) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100218300000i">OMAT1P021830</a></td><td>0.918936</td><td>-</td><td>AT1G74860</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300093100000i">OMAT3P009310</a></td><td>0.918408</td><td>-</td><td>AT3G24740</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300021700000i">OMAT3P002170</a></td><td>0.917686</td><td>-</td><td>AT3G06240</td><td>F-box family protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301142500000i">OMAT3P114250</a></td><td>-0.87005</td><td>-</td><td>AT3G57560</td><td>aspartate/glutamate/uridylate kinase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501128700000i">OMAT5P112870</a></td><td>-0.828663</td><td>-</td><td>AT5G50000</td><td>protein kinase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300017000000i">OMAT3P001700</a></td><td>-0.828045</td><td>-</td><td>AT3G04910</td><td>WNK1 (WITH NO LYSINE (K) 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201070600000i">OMAT2P107060</a></td><td>-0.82019</td><td>-</td><td>AT2G32810</td><td>BGAL9 (Beta galactosidase 9)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300174900000i">OMAT3P017490</a></td><td>-0.81965</td><td>-</td><td>AT3G61580</td><td>delta-8 sphingolipid desaturase (SLD1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201054800000i">OMAT2P105480</a></td><td>-0.818165</td><td>-</td><td>AT2G27770</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301148300000i">OMAT3P114830</a></td><td>-0.815998</td><td>-</td><td>AT3G59870</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101166700000i">OMAT1P116670</a></td><td>-0.808905</td><td>-</td><td>AT1G67090</td><td>RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301055000000i">OMAT3P105500</a></td><td>-0.807309</td><td>-</td><td>-</td><td>-</td><td>AT3G16370</td><td>GDSL-motif lipase/hydrolase family protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101510000i">OMAT4P110151</a></td><td>-0.804459</td><td>-</td><td>AT4G34720</td><td>AVA-P1</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100129600000i/OMAT1P012960-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 2.90e-22</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>2.90e-22 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044248</td><td>cellular catabolic process</td><td>10/200</td><td>2.77</td><td>1.09e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>10/200</td><td>2.10</td><td>8.89e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0005515</td><td>protein binding</td><td>37/200</td><td>2.36</td><td>2.80e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>32/200</td><td>2.36</td><td>1.90e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>32/200</td><td>2.23</td><td>6.35e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>32/200</td><td>2.23</td><td>6.35e-06</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>154/200</td><td>1.98</td><td>6.29e-29</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>160/200</td><td>1.90</td><td>1.00e-28</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>158/200</td><td>1.88</td><td>1.39e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>158/200</td><td>1.88</td><td>1.63e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>154/200</td><td>1.92</td><td>4.49e-27</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>145/200</td><td>1.97</td><td>1.41e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>148/200</td><td>1.92</td><td>5.19e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>153/200</td><td>1.84</td><td>1.15e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>151/200</td><td>1.86</td><td>2.30e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>159/200</td><td>1.77</td><td>2.61e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>156/200</td><td>1.73</td><td>2.65e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>153/200</td><td>1.75</td><td>9.26e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>157/200</td><td>1.70</td><td>1.48e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>151/200</td><td>1.75</td><td>1.92e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>156/200</td><td>1.70</td><td>3.74e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>157/200</td><td>1.66</td><td>1.87e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>157/200</td><td>1.66</td><td>1.87e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>158/200</td><td>1.64</td><td>8.62e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>150/200</td><td>1.70</td><td>1.49e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>144/200</td><td>1.75</td><td>2.55e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>158/200</td><td>1.61</td><td>3.90e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>158/200</td><td>1.61</td><td>7.33e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>158/200</td><td>1.61</td><td>7.33e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>160/200</td><td>1.56</td><td>7.32e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>82/200</td><td>2.53</td><td>1.47e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>82/200</td><td>2.53</td><td>1.47e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>134/200</td><td>1.76</td><td>2.79e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>160/200</td><td>1.54</td><td>4.16e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>160/200</td><td>1.53</td><td>8.52e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>162/200</td><td>1.49</td><td>4.91e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>65/200</td><td>2.23</td><td>3.88e-11</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>154/200</td><td>1.88</td><td>6.29e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>155/200</td><td>1.84</td><td>2.86e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>155/200</td><td>1.84</td><td>2.94e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>153/200</td><td>1.86</td><td>4.99e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>155/200</td><td>1.83</td><td>6.91e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>153/200</td><td>1.84</td><td>1.27e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>146/200</td><td>1.90</td><td>6.55e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>146/200</td><td>1.90</td><td>6.98e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>156/200</td><td>1.73</td><td>2.90e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>146/200</td><td>1.84</td><td>3.10e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>156/200</td><td>1.72</td><td>4.94e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>159/200</td><td>1.64</td><td>3.17e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>159/200</td><td>1.61</td><td>2.86e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>159/200</td><td>1.56</td><td>1.31e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>160/200</td><td>1.53</td><td>9.32e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>73/200</td><td>2.49</td><td>4.31e-15</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr001841</td><td>-</td><td>19/200</td><td>6.19</td><td>4.53e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>c3hc4</td><td>-</td><td>16/200</td><td>7.37</td><td>8.39e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr013083</td><td>-</td><td>18/200</td><td>5.74</td><td>4.77e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>finger</td><td>-</td><td>26/200</td><td>2.81</td><td>6.29e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>79/200</td><td>1.62</td><td>7.05e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>87/200</td><td>1.46</td><td>1.60e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ubiquitin</td><td>-</td><td>14/200</td><td>3.12</td><td>5.15e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>14/200</td><td>3.00</td><td>7.98e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>12/200</td><td>2.95</td><td>2.49e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>motif</td><td>-</td><td>12/200</td><td>2.47</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ligase</td><td>-</td><td>10/200</td><td>2.56</td><td>2.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>65/200</td><td>1.29</td><td>8.36e-03</td><td>-</td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene
OMAT1P012960