with_AGI_gene
OMAT1P015260
<html><body><title>OMAT1P015260</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100152600000i/OMAT1P015260.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100152600000i/OMAT1P015260.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100152600000i/OMAT1P015260.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100149600000i">OMAT1P014960</a></td><td>0.984147</td><td>-</td><td>AT1G53940</td><td>GLIP2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100138200000i">OMAT1P013820</a></td><td>0.983317</td><td>-</td><td>AT1G50060</td><td>pathogenesis-related protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501058700000i">OMAT5P105870</a></td><td>0.983207</td><td>-</td><td>AT5G19890</td><td>peroxidase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500120300000i">OMAT5P012030</a></td><td>0.983079</td><td>-</td><td>AT5G43540</td><td>zinc finger (C2H2 type) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401036500000i">OMAT4P103650</a></td><td>0.982806</td><td>-</td><td>AT4G15740</td><td>C2 domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200115200000i">OMAT2P011520</a></td><td>0.98266</td><td>-</td><td>AT2G42350</td><td>zinc finger (C3HC4-type RING finger) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501000700000i">OMAT5P100070</a></td><td>0.982454</td><td>-</td><td>AT5G01250</td><td>alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301102100000i">OMAT3P110210</a></td><td>0.981781</td><td>-</td><td>AT3G45410</td><td>lectin protein kinase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101102500000i">OMAT1P110250</a></td><td>0.981701</td><td>-</td><td>AT1G32450</td><td>NRT1.5 (NITRATE TRANSPORTER 1.5)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401044300000i">OMAT4P104430</a></td><td>0.98165</td><td>-</td><td>AT4G17800</td><td>DNA-binding protein-related</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400133100000i">OMAT4P013310</a></td><td>-0.655214</td><td>-</td><td>AT4G38225</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500161500000i">OMAT5P016150</a></td><td>-0.638271</td><td>-</td><td>AT5G54770</td><td>THI1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100006500000i">OMAT1P000650</a></td><td>-0.561864</td><td>-</td><td>AT1G02560</td><td>CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200114200000i">OMAT2P011420</a></td><td>-0.555668</td><td>-</td><td>AT2G42130</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200136100000i">OMAT2P013610</a></td><td>-0.546051</td><td>-</td><td>AT2G47400</td><td>CP12-1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400121800000i">OMAT4P012180</a></td><td>-0.545342</td><td>-</td><td>AT4G35450</td><td>AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100040200000i">OMAT1P004020</a></td><td>-0.527969</td><td>-</td><td>AT1G11750</td><td>CLPP6</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201004500000i">OMAT2P100450</a></td><td>-0.520281</td><td>-</td><td>AT2G02080</td><td>AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500146900000i">OMAT5P014690</a></td><td>-0.516485</td><td>-</td><td>AT5G51180</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300115350000i">OMAT3P011535</a></td><td>-0.510368</td><td>-</td><td>AT3G44620</td><td>protein tyrosine phosphatase</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100152600000i/OMAT1P015260-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.76e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.76e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>15/200</td><td>3.29</td><td>1.55e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>28/200</td><td>2.26</td><td>1.79e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>21/200</td><td>1.84</td><td>2.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>61/200</td><td>2.51</td><td>1.27e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>120/200</td><td>1.31</td><td>1.86e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>15/200</td><td>8.57</td><td>3.13e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>15/200</td><td>7.87</td><td>1.11e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>30/200</td><td>3.56</td><td>3.93e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>35/200</td><td>2.58</td><td>7.23e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0019825</td><td>oxygen binding</td><td>10/200</td><td>7.20</td><td>1.76e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>35/200</td><td>2.44</td><td>2.90e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>35/200</td><td>2.44</td><td>2.90e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016740</td><td>transferase activity</td><td>27/200</td><td>1.65</td><td>3.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>159/200</td><td>1.77</td><td>2.55e-24</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G54890&keyword=root">5.00E-51</a></td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>42/200</td><td>18.00</td><td>1.55e-41</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>62/200</td><td>2.56</td><td>3.34e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>61/200</td><td>2.58</td><td>3.81e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>mannose</td><td>-</td><td>10/200</td><td>12.50</td><td>5.62e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>electron</td><td>-</td><td>19/200</td><td>5.34</td><td>6.14e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>lectin</td><td>-</td><td>12/200</td><td>8.14</td><td>3.58e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>19/200</td><td>4.74</td><td>4.68e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017973</td><td>-</td><td>11/200</td><td>8.06</td><td>1.51e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017972</td><td>-</td><td>11/200</td><td>8.06</td><td>1.51e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr001128</td><td>-</td><td>11/200</td><td>7.29</td><td>4.59e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>oxygen</td><td>-</td><td>13/200</td><td>5.64</td><td>9.72e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>43/200</td><td>2.22</td><td>1.71e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>monooxygenase</td><td>-</td><td>11/200</td><td>6.44</td><td>1.75e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>cytochrome</td><td>-</td><td>13/200</td><td>5.32</td><td>1.98e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>36/200</td><td>2.38</td><td>3.44e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>response</td><td>-</td><td>40/200</td><td>2.23</td><td>4.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>defense</td><td>-</td><td>15/200</td><td>4.30</td><td>5.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>oxidase</td><td>-</td><td>13/200</td><td>4.73</td><td>8.14e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>34/200</td><td>2.33</td><td>1.19e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>34/200</td><td>2.31</td><td>1.41e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>putative</td><td>-</td><td>46/200</td><td>1.99</td><td>1.42e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>29/200</td><td>2.21</td><td>1.99e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>12/200</td><td>3.24</td><td>1.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>15/200</td><td>2.79</td><td>1.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>class</td><td>-</td><td>16/200</td><td>2.67</td><td>1.20e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>groups</td><td>-</td><td>11/200</td><td>3.37</td><td>1.21e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferring</td><td>-</td><td>11/200</td><td>3.30</td><td>1.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>23/200</td><td>2.10</td><td>2.68e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>17/200</td><td>2.34</td><td>3.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>signaling</td><td>-</td><td>11/200</td><td>2.95</td><td>4.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>12/200</td><td>2.79</td><td>4.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>17/200</td><td>2.23</td><td>7.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>12/200</td><td>2.52</td><td>1.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>22/200</td><td>1.92</td><td>1.22e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>11/200</td><td>2.58</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>12/200</td><td>2.42</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stress</td><td>-</td><td>11/200</td><td>2.34</td><td>2.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>23/200</td><td>1.70</td><td>4.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>19/200</td><td>1.80</td><td>4.71e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>10/200</td><td>2.28</td><td>4.91e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>24/200</td><td>1.66</td><td>5.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>11/200</td><td>2.09</td><td>7.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>31/200</td><td>1.51</td><td>7.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>10/200</td><td>2.15</td><td>7.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>15/200</td><td>1.83</td><td>8.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferase</td><td>-</td><td>12/200</td><td>1.96</td><td>9.10e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a 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0.62634999999999996234