with_AGI_gene
0.93850900000000003764
<html><body><title>OMAT1P019860</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100198600000i/OMAT1P019860.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100198600000i/OMAT1P019860.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100198600000i/OMAT1P019860.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300154400000i">OMAT3P015440</a></td><td>0.660074</td><td>-</td><td>AT3G55750,AT3G55760</td><td>[AT3G55750]60S ribosomal protein L35a (RPL35aD), [AT3G55760]unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400134500000i">OMAT4P013450</a></td><td>0.646894</td><td>-</td><td>AT4G38580</td><td>ATFP6 (FARNESYLATED PROTEIN 6)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100179600000i">OMAT1P017960</a></td><td>0.624191</td><td>-</td><td>AT1G64890</td><td>integral membrane transporter family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100129000000i">OMAT1P012900</a></td><td>0.623305</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201121800000i">OMAT2P112180</a></td><td>0.60915</td><td>-</td><td>AT2G46970</td><td>PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500010000000i">OMAT5P001000</a></td><td>0.606815</td><td>-</td><td>AT5G03520</td><td>ATRAB8C</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501061500000i">OMAT5P106150</a></td><td>0.606068</td><td>-</td><td>AT5G20670</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101011400000i">OMAT1P101140</a></td><td>0.594527</td><td>-</td><td>AT1G04570</td><td>integral membrane transporter family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101140600000i">OMAT1P114060</a></td><td>0.591883</td><td>-</td><td>AT1G56300</td><td>DNAJ heat shock N-terminal domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301145900000i">OMAT3P114590</a></td><td>0.58849</td><td>-</td><td>AT3G58790</td><td>GAUT15 (Galacturonosyltransferase 15)</td><td>AT3G58795</td><td>other RNA</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100089400000i">OMAT1P008940</a></td><td>-0.693511</td><td>-</td><td>AT1G24340</td><td>emb2421 (embryo defective 2421)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200041100000i">OMAT2P004110</a></td><td>-0.666167</td><td>-</td><td>AT2G21830</td><td>DC1 domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501082300000i">OMAT5P108230</a></td><td>-0.639952</td><td>-</td><td>AT5G28020</td><td>CYSD2 (CYSTEINE SYNTHASE D2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300120100000i">OMAT3P012010</a></td><td>-0.634227</td><td>-</td><td>-</td><td>-</td><td>AT3G46650</td><td>UDP-glycosyltransferase/ transferase, transferring glycosyl groups</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101070700000i">OMAT1P107070</a></td><td>-0.605948</td><td>-</td><td>AT1G21920</td><td>MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200029600000i">OMAT2P002960</a></td><td>-0.605155</td><td>-</td><td>AT2G18560</td><td>UDP-glucoronosyl/UDP-glucosyl transferase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200085800000i">OMAT2P008580</a></td><td>-0.592009</td><td>-</td><td>AT2G34620</td><td>mitochondrial transcription termination factor-related / mTERF-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400031500000i">OMAT4P003150</a></td><td>-0.587681</td><td>-</td><td>AT4G12390</td><td>PME1 (PECTIN METHYLESTERASE INHIBITOR 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400128300000i">OMAT4P012830</a></td><td>-0.582597</td><td>-</td><td>AT4G37180</td><td>myb family transcription factor</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300073400000i">OMAT3P007340</a></td><td>-0.569627</td><td>-</td><td>AT3G19450</td><td>ATCAD4</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100198600000i/OMAT1P019860-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 2.34e-12</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>2.34e-12 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>23/200</td><td>2.24</td><td>9.87e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G69870&keyword=transport">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>23/200</td><td>2.24</td><td>1.03e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>13/200</td><td>2.50</td><td>8.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>115/200</td><td>1.26</td><td>3.24e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0016020</td><td>membrane</td><td>44/200</td><td>1.61</td><td>4.68e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G69870&keyword=membrane">3.64E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>40/200</td><td>1.65</td><td>5.20e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022892</td><td>substrate-specific transporter activity</td><td>13/200</td><td>2.52</td><td>7.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0022891</td><td>substrate-specific transmembrane transporter activity</td><td>11/200</td><td>2.50</td><td>1.71e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022857</td><td>transmembrane transporter activity</td><td>12/200</td><td>2.14</td><td>4.49e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>84/200</td><td>2.88</td><td>8.93e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>140/200</td><td>1.69</td><td>8.10e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>142/200</td><td>1.54</td><td>3.17e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>152/200</td><td>1.46</td><td>7.52e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>152/200</td><td>1.45</td><td>1.40e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>142/200</td><td>1.51</td><td>2.25e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>142/200</td><td>1.51</td><td>2.25e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>155/200</td><td>1.43</td><td>2.34e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>135/200</td><td>1.54</td><td>4.04e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>147/200</td><td>1.43</td><td>3.60e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>125/200</td><td>1.49</td><td>1.57e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>128/200</td><td>1.42</td><td>2.07e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>111/200</td><td>1.32</td><td>4.06e-05</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>83/200</td><td>2.83</td><td>5.47e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>147/200</td><td>1.52</td><td>1.51e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>154/200</td><td>1.47</td><td>1.59e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>149/200</td><td>1.46</td><td>2.38e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>142/200</td><td>1.44</td><td>1.48e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>111/200</td><td>1.23</td><td>1.15e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>111/200</td><td>1.23</td><td>1.39e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>102/200</td><td>1.24</td><td>1.72e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>germinated</td><td>-</td><td>47/200</td><td>8.49</td><td>4.45e-31</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>55/200</td><td>6.16</td><td>3.45e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>65/200</td><td>4.95</td><td>4.33e-29</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>62/200</td><td>4.25</td><td>4.15e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>62/200</td><td>4.22</td><td>6.15e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>mature</td><td>-</td><td>49/200</td><td>5.48</td><td>1.02e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>62/200</td><td>4.10</td><td>2.74e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>70/200</td><td>3.62</td><td>2.86e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>25/200</td><td>6.66</td><td>1.11e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>16/200</td><td>5.35</td><td>1.05e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>sepal</td><td>-</td><td>12/200</td><td>5.56</td><td>3.14e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>whorl</td><td>-</td><td>11/200</td><td>4.70</td><td>4.72e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>gametophyte</td><td>-</td><td>14/200</td><td>3.56</td><td>1.10e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>19/200</td><td>2.49</td><td>8.95e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>45/200</td><td>1.69</td><td>1.25e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G69870&keyword=membrane">3.64E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>11/200</td><td>3.20</td><td>1.93e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>40/200</td><td>1.69</td><td>2.96e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>21/200</td><td>2.16</td><td>3.18e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G69870&keyword=transport">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>40/200</td><td>1.65</td><td>4.92e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transporter</td><td>-</td><td>15/200</td><td>2.16</td><td>1.77e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G69870&keyword=transporter">5.00E-130</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carbohydrate</td><td>-</td><td>10/200</td><td>2.55</td><td>2.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>21/200</td><td>1.83</td><td>2.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>20/200</td><td>1.83</td><td>3.34e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>14/200</td><td>1.92</td><td>6.85e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>regulation</td><td>-</td><td>22/200</td><td>1.66</td><td>6.91e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>31/200</td><td>1.51</td><td>7.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>15/200</td><td>1.83</td><td>8.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>29/200</td><td>1.50</td><td>9.96e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
OMAT1P019860