0.73030200000000000671
<html><body><title>OMAT1P021940</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100219400000i/OMAT1P021940.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100219400000i/OMAT1P021940.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100219400000i/OMAT1P021940.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400086900000i">OMAT4P008690</a></td><td>0.991122</td><td>-</td><td>AT4G27380</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100103500000i">OMAT1P010350</a></td><td>0.990793</td><td>-</td><td>AtU31a,AtsnoR4a,AtU33a,AtU51a,AT1G29418,AtsnoR5a</td><td>[AtU31a]AtU31a, [AtsnoR4a]AtsnoR4a, [AtU33a]AtU33a, [AtU51a]AtU51a, [AT1G29418]unknown protein, [AtsnoR5a]AtsnoR5a</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201011600000i">OMAT2P101160</a></td><td>0.98645</td><td>-</td><td>At77Y-2,AT2G05765,AtU65-2,AtU49-2</td><td>[At77Y-2]At77Y-2, [AT2G05765]snoRNA, [AtU65-2]AtU65-2, [AtU49-2]AtU49-2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300083000000i">OMAT3P008300</a></td><td>0.983453</td><td>-</td><td>AtsnoR37-1,AT3G21805,AtsnoR22-1,AtsnoR23-1</td><td>[AtsnoR37-1]AtsnoR37-1, [AT3G21805]snoRNA, [AtsnoR22-1]AtsnoR22-1, [AtsnoR23-1]AtsnoR23-1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200123900000i">OMAT2P012390</a></td><td>0.983293</td><td>-</td><td>AT2G44510</td><td>p21Cip1-binding protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200064800000i">OMAT2P006480</a></td><td>0.980492</td><td>-</td><td>AT2G28600</td><td>ATP binding / ATP-dependent helicase/ nucleic acid binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101060100000i">OMAT1P106010</a></td><td>0.979144</td><td>-</td><td>AT1G18800</td><td>NRP2 (NAP1-RELATED PROTEIN 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201096200000i">OMAT2P109620</a></td><td>0.978705</td><td>-</td><td>AT2G39415</td><td>F-box family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500167500000i">OMAT5P016750</a></td><td>0.976863</td><td>-</td><td>AtsnoR12-2,AtU24-2</td><td>[AtsnoR12-2]AtsnoR12-2, [AtU24-2]AtU24-2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100093700000i">OMAT1P009370</a></td><td>0.976379</td><td>-</td><td>AT1G26340</td><td>CB5-A (CYTOCHROME B5 ISOFORM A)</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100075400000i">OMAT1P007540</a></td><td>-0.686028</td><td>-</td><td>AT1G20620</td><td>CAT3 (CATALASE 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301129100000i">OMAT3P112910</a></td><td>-0.662485</td><td>-</td><td>AT3G53990</td><td>universal stress protein (USP) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101106700000i">OMAT1P110670</a></td><td>-0.647542</td><td>-</td><td>AT1G34220</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401029300000i">OMAT4P102930</a></td><td>-0.636173</td><td>-</td><td>AT4G13460</td><td>SUVH9</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501088000000i">OMAT5P108800</a></td><td>-0.635931</td><td>-</td><td>AT5G36160</td><td>aminotransferase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201085450000i">OMAT2P108545</a></td><td>-0.6268</td><td>-</td><td>AT2G36895</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300056600000i">OMAT3P005660</a></td><td>-0.625153</td><td>-</td><td>AT3G15450</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201002900000i">OMAT2P100290</a></td><td>-0.620836</td><td>-</td><td>AT2G01690</td><td>binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401070100000i">OMAT4P107010</a></td><td>-0.606489</td><td>-</td><td>AT4G25650</td><td>ACD1-LIKE (ACD1-LIKE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500190700000i">OMAT5P019070</a></td><td>-0.597127</td><td>-</td><td>AT5G62560</td><td>armadillo/beta-catenin repeat family protein / U-box domain-containing protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100219400000i/OMAT1P021940-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.75e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.75e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006364</td><td>rRNA processing</td><td>20/200</td><td>31.98</td><td>2.60e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>24/200</td><td>18.74</td><td>5.89e-25</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>24/200</td><td>18.14</td><td>1.34e-24</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009451</td><td>RNA modification</td><td>18/200</td><td>23.75</td><td>2.42e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>24/200</td><td>10.84</td><td>4.34e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>27/200</td><td>3.17</td><td>3.23e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>41/200</td><td>2.01</td><td>4.30e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>30/200</td><td>2.00</td><td>9.62e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>57/200</td><td>1.47</td><td>6.35e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>30/200</td><td>1.78</td><td>7.17e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>15/200</td><td>2.07</td><td>2.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>31/200</td><td>1.59</td><td>3.46e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>31/200</td><td>1.56</td><td>4.64e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>20/200</td><td>1.76</td><td>4.95e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>48/200</td><td>1.36</td><td>8.59e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>32/200</td><td>9.17</td><td>1.54e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>25/200</td><td>4.19</td><td>3.41e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>25/200</td><td>4.19</td><td>3.41e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>13/200</td><td>8.01</td><td>1.19e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0005730</td><td>nucleolus</td><td>13/200</td><td>7.58</td><td>2.38e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>14/200</td><td>5.46</td><td>5.45e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>14/200</td><td>5.16</td><td>1.14e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>14/200</td><td>5.15</td><td>1.17e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0031981</td><td>nuclear lumen</td><td>13/200</td><td>5.38</td><td>1.75e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0044445</td><td>cytosolic part</td><td>10/200</td><td>6.68</td><td>3.72e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0022626</td><td>cytosolic ribosome</td><td>11/200</td><td>5.98</td><td>3.90e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>33/200</td><td>2.30</td><td>2.24e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>33/200</td><td>2.30</td><td>2.29e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044428</td><td>nuclear part</td><td>13/200</td><td>3.91</td><td>7.36e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>10/200</td><td>2.42</td><td>3.16e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>66/200</td><td>1.30</td><td>6.79e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>15/200</td><td>6.93</td><td>7.12e-10</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>20/200</td><td>6.62</td><td>4.30e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>16/200</td><td>6.06</td><td>1.66e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>15/200</td><td>5.35</td><td>2.74e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>nucleolus</td><td>-</td><td>10/200</td><td>7.36</td><td>1.41e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>structural</td><td>-</td><td>15/200</td><td>4.28</td><td>5.64e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>translation</td><td>-</td><td>18/200</td><td>3.63</td><td>6.71e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cytosolic</td><td>-</td><td>10/200</td><td>4.67</td><td>1.16e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>15/200</td><td>2.05</td><td>3.00e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene
OMAT1P021940