OMAT1P100920
<html><body><title>OMAT1P100920</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101009200000i/OMAT1P100920.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101009200000i/OMAT1P100920.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101009200000i/OMAT1P100920.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401072500000i">OMAT4P107250</a></td><td>0.902646</td><td>-</td><td>AT4G26540</td><td>kinase</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401088900000i">OMAT4P108890</a></td><td>0.892364</td><td>-</td><td>AT4G31470</td><td>pathogenesis-related protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200118300000i">OMAT2P011830</a></td><td>0.88394</td><td>-</td><td>AT2G43150</td><td>proline-rich extensin-like family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101180400000i">OMAT1P118040</a></td><td>0.87784</td><td>-</td><td>AT1G71070</td><td>glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501112900000i">OMAT5P111290</a></td><td>0.874747</td><td>-</td><td>AT5G45480</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501153500000i">OMAT5P115350</a></td><td>0.862751</td><td>-</td><td>AT5G58150</td><td>leucine-rich repeat transmembrane protein kinase, putative</td><td>AT5G58140</td><td>PHOT2 (PHOTOTROPIN 2)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300151600000i">OMAT3P015160</a></td><td>0.860977</td><td>-</td><td>AT3G55230</td><td>disease resistance-responsive family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501064300000i">OMAT5P106430</a></td><td>0.859508</td><td>-</td><td>AT5G22140</td><td>pyridine nucleotide-disulphide oxidoreductase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301097100000i">OMAT3P109710</a></td><td>0.859036</td><td>-</td><td>AT3G32980</td><td>peroxidase 32 (PER32) (P32) (PRXR3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201015600000i">OMAT2P101560</a></td><td>0.858839</td><td>-</td><td>AT2G13820</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300036600000i">OMAT3P003660</a></td><td>-0.788774</td><td>-</td><td>AT3G10490</td><td>anac052 (Arabidopsis NAC domain containing protein 52)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400097100000i">OMAT4P009710</a></td><td>-0.771505</td><td>-</td><td>AT4G29490</td><td>aminopeptidase/ manganese ion binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400041500000i">OMAT4P004150</a></td><td>-0.750481</td><td>-</td><td>AT4G15020</td><td>DNA binding / protein dimerization</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100033900000i">OMAT1P003390</a></td><td>-0.750435</td><td>-</td><td>AT1G09795</td><td>ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400138600000i">OMAT4P013860</a></td><td>-0.747299</td><td>-</td><td>AT4G39850</td><td>PXA1 (PEROXISOMAL ABC TRANSPORTER 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100152400000i">OMAT1P015240</a></td><td>-0.74728</td><td>-</td><td>AT1G54830</td><td>NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300019300000i">OMAT3P001930</a></td><td>-0.743386</td><td>-</td><td>AT3G05545</td><td>transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300006700000i">OMAT3P000670</a></td><td>-0.741851</td><td>-</td><td>AT3G02480</td><td>ABA-responsive protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200105050000i">OMAT2P010505</a></td><td>-0.724654</td><td>-</td><td>AT2G39725</td><td>complex 1 family protein / LVR family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401071900000i">OMAT4P107190</a></td><td>-0.720022</td><td>-</td><td>AT4G26270</td><td>PFK3 (PHOSPHOFRUCTOKINASE 3)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101009200000i/OMAT1P100920-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 4.68e-09</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>4.68e-09 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006979</td><td>response to oxidative stress</td><td>11/200</td><td>6.72</td><td>1.10e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>32/200</td><td>2.58</td><td>2.57e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>10/200</td><td>4.32</td><td>2.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>26/200</td><td>2.28</td><td>2.90e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>13/200</td><td>2.73</td><td>3.43e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>16/200</td><td>2.16</td><td>1.32e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>10/200</td><td>2.20</td><td>6.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>10/200</td><td>2.20</td><td>6.39e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>150/200</td><td>1.64</td><td>8.39e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>54/200</td><td>2.22</td><td>3.25e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0016020</td><td>membrane</td><td>57/200</td><td>2.08</td><td>1.22e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0005886</td><td>plasma membrane</td><td>34/200</td><td>2.74</td><td>2.42e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005773</td><td>vacuole</td><td>14/200</td><td>4.06</td><td>2.35e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G04040&keyword=vacuole">7.27E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005618</td><td>cell wall</td><td>12/200</td><td>3.61</td><td>3.32e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0030312</td><td>external encapsulating structure</td><td>12/200</td><td>3.59</td><td>3.58e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>10/200</td><td>2.42</td><td>3.16e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>52/200</td><td>1.39</td><td>4.20e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0016684</td><td>oxidoreductase activity, acting on peroxide as acceptor</td><td>12/200</td><td>19.19</td><td>6.88e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004601</td><td>peroxidase activity</td><td>12/200</td><td>19.19</td><td>6.88e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>26/200</td><td>3.08</td><td>1.02e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>11/200</td><td>6.29</td><td>2.28e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>11/200</td><td>5.77</td><td>5.66e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>28/200</td><td>1.95</td><td>2.39e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>28/200</td><td>1.95</td><td>2.39e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>26/200</td><td>1.92</td><td>4.99e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0022891</td><td>substrate-specific transmembrane transporter activity</td><td>10/200</td><td>2.27</td><td>5.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016740</td><td>transferase activity</td><td>26/200</td><td>1.59</td><td>6.91e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>167/200</td><td>1.86</td><td>2.60e-30</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>145/200</td><td>1.64</td><td>1.02e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>147/200</td><td>1.52</td><td>1.05e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>148/200</td><td>1.50</td><td>2.03e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>148/200</td><td>1.50</td><td>2.03e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>147/200</td><td>1.50</td><td>3.65e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>145/200</td><td>1.34</td><td>3.79e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>137/200</td><td>1.34</td><td>2.54e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>125/200</td><td>1.36</td><td>9.00e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>109/200</td><td>1.32</td><td>5.56e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>131/200</td><td>1.25</td><td>5.97e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>130/200</td><td>1.25</td><td>7.55e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>99/200</td><td>1.35</td><td>8.05e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>109/200</td><td>1.29</td><td>1.70e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>116/200</td><td>1.23</td><td>8.09e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>116/200</td><td>1.23</td><td>8.09e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>110/200</td><td>1.22</td><td>1.80e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>103/200</td><td>1.23</td><td>2.52e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>95/200</td><td>1.25</td><td>2.56e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>103/200</td><td>1.20</td><td>6.42e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>93/200</td><td>1.20</td><td>9.45e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>114/200</td><td>1.36</td><td>7.49e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>114/200</td><td>1.35</td><td>7.57e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>134/200</td><td>1.28</td><td>9.55e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>114/200</td><td>1.35</td><td>1.10e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>128/200</td><td>1.26</td><td>7.17e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>123/200</td><td>1.25</td><td>2.10e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>98/200</td><td>1.27</td><td>9.32e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>98/200</td><td>1.27</td><td>9.52e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>114/200</td><td>1.18</td><td>6.42e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>28/200</td><td>12.00</td><td>3.61e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>response</td><td>-</td><td>50/200</td><td>2.79</td><td>4.86e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>peroxidase</td><td>-</td><td>11/200</td><td>15.50</td><td>7.85e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>55/200</td><td>2.33</td><td>4.10e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stress</td><td>-</td><td>22/200</td><td>4.69</td><td>4.19e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>fungal</td><td>-</td><td>10/200</td><td>12.69</td><td>4.78e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>55/200</td><td>2.27</td><td>1.03e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>58/200</td><td>2.18</td><td>1.54e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>electron</td><td>-</td><td>18/200</td><td>5.06</td><td>3.88e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>19/200</td><td>4.74</td><td>4.68e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>oxidative</td><td>-</td><td>11/200</td><td>7.82</td><td>2.12e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>allergen</td><td>-</td><td>10/200</td><td>8.80</td><td>2.28e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>plasma</td><td>-</td><td>32/200</td><td>2.79</td><td>4.16e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>putative</td><td>-</td><td>48/200</td><td>2.08</td><td>2.28e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>bacterial</td><td>-</td><td>10/200</td><td>6.62</td><td>4.03e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>vacuole</td><td>-</td><td>12/200</td><td>3.81</td><td>1.94e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G04040&keyword=vacuole">7.27E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>responsive</td><td>-</td><td>11/200</td><td>3.67</td><td>5.38e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>class</td><td>-</td><td>16/200</td><td>2.67</td><td>1.20e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G04040&keyword=class">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphate</td><td>-</td><td>10/200</td><td>3.30</td><td>2.59e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>36/200</td><td>1.76</td><td>2.84e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>11/200</td><td>2.97</td><td>3.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catabolic</td><td>-</td><td>10/200</td><td>3.00</td><td>5.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>33/200</td><td>1.71</td><td>7.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>16/200</td><td>2.24</td><td>8.94e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>20/200</td><td>1.97</td><td>1.36e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>12/200</td><td>2.42</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transporter</td><td>-</td><td>15/200</td><td>2.16</td><td>1.77e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>24/200</td><td>1.77</td><td>2.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>15/200</td><td>2.07</td><td>2.72e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>10/200</td><td>2.28</td><td>4.91e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>24/200</td><td>1.66</td><td>5.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/200</td><td>2.09</td><td>6.98e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferase</td><td>-</td><td>12/200</td><td>1.96</td><td>9.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>12/200</td><td>1.95</td><td>9.24e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene
0.96554899999999999061