OMAT1P103170
0.60377899999999995462
<html><body><title>OMAT1P103170</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101031700000i/OMAT1P103170.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101031700000i/OMAT1P103170.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101031700000i/OMAT1P103170.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200077800000i">OMAT2P007780</a></td><td>0.952965</td><td>-</td><td>AT2G32220</td><td>60S ribosomal protein L27 (RPL27A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100071000000i">OMAT1P007100</a></td><td>0.947555</td><td>-</td><td>AT1G19376,AtU43-1</td><td>[AT1G19376]snoRNA, [AtU43-1]AtU43-1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101054600000i">OMAT1P105460</a></td><td>0.946349</td><td>-</td><td>AtsnoR34</td><td>AtsnoR34</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500167500000i">OMAT5P016750</a></td><td>0.945913</td><td>-</td><td>AtsnoR12-2,AtU24-2</td><td>[AtsnoR12-2]AtsnoR12-2, [AtU24-2]AtU24-2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401011300000i">OMAT4P101130</a></td><td>0.945448</td><td>-</td><td>AT4G03292,AtsnoR6-3,AtU38-3,AT4G03295,AtU36a-3</td><td>[AT4G03292]nucleic acid binding, [AtsnoR6-3]AtsnoR6-3, [AtU38-3]AtU38-3, [AT4G03295]snoRNA, [AtU36a-3]AtU36a-3</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301157800000i">OMAT3P115780</a></td><td>0.94523</td><td>-</td><td>AT3G62940</td><td>OTU-like cysteine protease family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300167500000i">OMAT3P016750</a></td><td>0.945147</td><td>-</td><td>AT3G59650</td><td>mitochondrial ribosomal protein L51/S25/CI-B8 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300008400000i">OMAT3P000840</a></td><td>0.943668</td><td>-</td><td>AtsnoR78-2,AtsnoR78-1</td><td>[AtsnoR78-2]AtsnoR78-2, [AtsnoR78-1]AtsnoR78-1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300109200000i">OMAT3P010920</a></td><td>0.942357</td><td>-</td><td>AtsnoR94</td><td>AtsnoR94</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300022000000i">OMAT3P002200</a></td><td>0.941898</td><td>-</td><td>AT3G06320</td><td>ribosomal protein L33 family protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300021100000i">OMAT3P002110</a></td><td>-0.716232</td><td>-</td><td>AT3G06110</td><td>MKP2 (MAPK PHOSPHATASE 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201002900000i">OMAT2P100290</a></td><td>-0.715711</td><td>-</td><td>AT2G01690</td><td>binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401029300000i">OMAT4P102930</a></td><td>-0.71071</td><td>-</td><td>AT4G13460</td><td>SUVH9</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100075400000i">OMAT1P007540</a></td><td>-0.710436</td><td>-</td><td>AT1G20620</td><td>CAT3 (CATALASE 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401097000000i">OMAT4P109700</a></td><td>-0.671578</td><td>-</td><td>AT4G33530</td><td>KUP5</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100005000000i">OMAT1P000500</a></td><td>-0.668273</td><td>-</td><td>AT1G02170</td><td>AMC1 (METACASPASE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400133200000i">OMAT4P013320</a></td><td>-0.663636</td><td>-</td><td>AT4G38250</td><td>amino acid transporter family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400007800000i">OMAT4P000780</a></td><td>-0.662969</td><td>-</td><td>AT4G02120</td><td>CTP synthase, putative / UTP--ammonia ligase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301103300000i">OMAT3P110330</a></td><td>-0.659356</td><td>-</td><td>AT3G46000</td><td>ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500197300000i">OMAT5P019730</a></td><td>-0.658978</td><td>-</td><td>AT5G64240</td><td>AtMC3 (metacaspase 3)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101031700000i/OMAT1P103170-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 8.15e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>8.15e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>21/200</td><td>16.39</td><td>7.64e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>21/200</td><td>15.87</td><td>1.56e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009451</td><td>RNA modification</td><td>15/200</td><td>19.79</td><td>6.38e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006364</td><td>rRNA processing</td><td>14/200</td><td>22.38</td><td>8.54e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>19/200</td><td>8.58</td><td>1.20e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>22/200</td><td>2.59</td><td>1.56e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>38/200</td><td>1.87</td><td>5.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>29/200</td><td>1.72</td><td>1.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>26/200</td><td>1.73</td><td>2.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>27/200</td><td>7.74</td><td>2.27e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>27/200</td><td>4.53</td><td>1.20e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>27/200</td><td>4.53</td><td>1.20e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0005730</td><td>nucleolus</td><td>13/200</td><td>7.58</td><td>2.38e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>15/200</td><td>5.53</td><td>1.74e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>15/200</td><td>5.52</td><td>1.80e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>11/200</td><td>6.77</td><td>1.02e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0031981</td><td>nuclear lumen</td><td>13/200</td><td>5.38</td><td>1.75e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>13/200</td><td>5.07</td><td>3.53e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>34/200</td><td>2.37</td><td>8.00e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>34/200</td><td>2.37</td><td>8.15e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044428</td><td>nuclear part</td><td>13/200</td><td>3.91</td><td>7.36e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>77/200</td><td>1.51</td><td>1.74e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>78/200</td><td>1.47</td><td>4.68e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>66/200</td><td>1.43</td><td>5.01e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>15/200</td><td>2.34</td><td>7.55e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>13/200</td><td>6.00</td><td>4.54e-08</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>105/200</td><td>1.22</td><td>2.79e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>100/200</td><td>1.26</td><td>1.32e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>100/200</td><td>1.20</td><td>6.17e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>19/200</td><td>6.29</td><td>3.42e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>16/200</td><td>6.06</td><td>1.66e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>nucleolus</td><td>-</td><td>11/200</td><td>8.09</td><td>1.44e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>13/200</td><td>4.64</td><td>1.02e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>mitochondrial</td><td>-</td><td>11/200</td><td>4.88</td><td>3.25e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>structural</td><td>-</td><td>13/200</td><td>3.71</td><td>1.33e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>translation</td><td>-</td><td>15/200</td><td>3.03</td><td>4.30e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>14/200</td><td>1.91</td><td>7.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>11/200</td><td>2.01</td><td>9.51e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene