with_AGI_gene
0.75436199999999997701
<html><body><title>OMAT1P120260</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101202600000i/OMAT1P120260.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101202600000i/OMAT1P120260.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101202600000i/OMAT1P120260.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501178900000i">OMAT5P117890</a></td><td>0.956881</td><td>-</td><td>AT5G65250,AT5G65260</td><td>[AT5G65250]unknown protein, [AT5G65260]polyadenylate-binding protein family protein / PABP family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501147200000i">OMAT5P114720</a></td><td>0.930335</td><td>-</td><td>AT5G56260</td><td>dimethylmenaquinone methyltransferase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100177600000i">OMAT1P017760</a></td><td>0.929029</td><td>-</td><td>AT1G64490</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500196400000i">OMAT5P019640</a></td><td>0.926444</td><td>-</td><td>AT5G63980</td><td>SAL1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200131900000i">OMAT2P013190</a></td><td>0.921472</td><td>-</td><td>AT2G46450</td><td>ATCNGC12</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101158000000i">OMAT1P115800</a></td><td>0.919276</td><td>-</td><td>AT1G64220</td><td>TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101204600000i">OMAT1P120460</a></td><td>0.915409</td><td>-</td><td>AT1G78190</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501113700000i">OMAT5P111370</a></td><td>0.914761</td><td>-</td><td>AT5G45775,AT5G45780</td><td>[AT5G45775]60S ribosomal protein L11 (RPL11D), [AT5G45780]leucine-rich repeat transmembrane protein kinase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101012100000i">OMAT1P101210</a></td><td>0.914576</td><td>-</td><td>AT1G04770</td><td>male sterility MS5 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301102000000i">OMAT3P110200</a></td><td>0.911215</td><td>-</td><td>AT3G45310</td><td>cysteine proteinase, putative</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401014200000i">OMAT4P101420</a></td><td>-0.643171</td><td>-</td><td>AT4G05050</td><td>UBQ11 (UBIQUITIN 11)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201083300000i">OMAT2P108330</a></td><td>-0.607856</td><td>-</td><td>AT2G36490</td><td>DML1 (DEMETER-LIKE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401056800000i">OMAT4P105680</a></td><td>-0.580721</td><td>-</td><td>-</td><td>-</td><td>AT4G22020</td><td>pseudogene, hypothetical protein, similar to uncharacterized glycine-rich protein (GI:7269047) {Arabidopsis thaliana}</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301077700000i">OMAT3P107770</a></td><td>-0.570584</td><td>-</td><td>-</td><td>-</td><td>AT3G23450</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200076500000i">OMAT2P007650</a></td><td>-0.543458</td><td>-</td><td>AT2G31940</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100024100000i">OMAT1P002410</a></td><td>-0.517699</td><td>-</td><td>AT1G07470</td><td>transcription factor IIA large subunit, putative / TFIIA large subunit, putative</td><td>AT1G07473</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301129100000i">OMAT3P112910</a></td><td>-0.512514</td><td>-</td><td>AT3G53990</td><td>universal stress protein (USP) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101147300000i">OMAT1P114730</a></td><td>-0.508946</td><td>-</td><td>AT1G60790</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501032800000i">OMAT5P103280</a></td><td>-0.508807</td><td>-</td><td>AT5G11840</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100189600000i">OMAT1P018960</a></td><td>-0.504415</td><td>-</td><td>AT1G67850</td><td>unknown protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u101202600000i/OMAT1P120260-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>22/200</td><td>17.17</td><td>3.43e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>22/200</td><td>16.63</td><td>7.25e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006364</td><td>rRNA processing</td><td>17/200</td><td>27.18</td><td>2.05e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009451</td><td>RNA modification</td><td>17/200</td><td>22.43</td><td>7.71e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>18/200</td><td>8.13</td><td>1.25e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>23/200</td><td>2.70</td><td>4.95e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>40/200</td><td>1.96</td><td>1.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>58/200</td><td>1.50</td><td>3.55e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>28/200</td><td>1.86</td><td>4.99e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>30/200</td><td>1.78</td><td>7.17e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>66/200</td><td>1.33</td><td>3.41e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>31/200</td><td>1.59</td><td>3.46e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006508</td><td>proteolysis</td><td>10/200</td><td>2.39</td><td>3.49e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>31/200</td><td>1.56</td><td>4.64e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>20/200</td><td>1.76</td><td>4.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>14/200</td><td>1.93</td><td>6.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>48/200</td><td>1.36</td><td>8.59e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>31/200</td><td>8.89</td><td>1.80e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>14/200</td><td>5.46</td><td>5.45e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>11/200</td><td>6.77</td><td>1.02e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>20/200</td><td>3.36</td><td>6.62e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>20/200</td><td>3.36</td><td>6.62e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>72/200</td><td>1.41</td><td>3.55e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>74/200</td><td>1.39</td><td>4.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>26/200</td><td>1.81</td><td>1.13e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>26/200</td><td>1.81</td><td>1.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>10/200</td><td>2.42</td><td>3.16e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>14/200</td><td>6.47</td><td>5.89e-09</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>96/200</td><td>1.21</td><td>7.40e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>16/200</td><td>5.30</td><td>1.22e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>14/200</td><td>5.30</td><td>8.06e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>14/200</td><td>5.00</td><td>1.74e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>structural</td><td>-</td><td>14/200</td><td>3.99</td><td>2.84e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>translation</td><td>-</td><td>17/200</td><td>3.43</td><td>2.85e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>19/200</td><td>2.59</td><td>5.12e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G77480&keyword=subunit">6.00E-11</a></td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
OMAT1P120260