OMAT2P004860
with_AGI_gene
0.85137799999999996814
<html><body><title>OMAT2P004860</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200048600000i/OMAT2P004860.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200048600000i/OMAT2P004860.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200048600000i/OMAT2P004860.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101121400000i">OMAT1P112140</a></td><td>0.989203</td><td>-</td><td>AT1G49800</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501125200000i">OMAT5P112520</a></td><td>0.988608</td><td>-</td><td>AT5G49180</td><td>pectinesterase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200003800000i">OMAT2P000380</a></td><td>0.98845</td><td>-</td><td>AT2G02147</td><td>LCR73 (Low-molecular-weight cysteine-rich 73)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500097900000i">OMAT5P009790</a></td><td>0.988337</td><td>-</td><td>AT5G35550</td><td>TT2 (TRANSPARENT TESTA 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100031900000i">OMAT1P003190</a></td><td>0.988327</td><td>-</td><td>AT1G09370</td><td>enzyme inhibitor/ pectinesterase</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400033400000i">OMAT4P003340</a></td><td>0.987533</td><td>-</td><td>AT4G12890</td><td>gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400033300000i">OMAT4P003330</a></td><td>0.987407</td><td>-</td><td>AT4G12870</td><td>gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101006200000i">OMAT1P100620</a></td><td>0.987158</td><td>-</td><td>AT1G02940</td><td>GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200078600000i">OMAT2P007860</a></td><td>0.986881</td><td>-</td><td>AT2G32370</td><td>HDG3 (HOMEODOMAIN GLABROUS 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500193000000i">OMAT5P019300</a></td><td>0.98687</td><td>-</td><td>AT5G63087</td><td>Encodes a Plant thionin family protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200059100000i">OMAT2P005910</a></td><td>-0.641486</td><td>-</td><td>AT2G27050</td><td>EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101044400000i">OMAT1P104440</a></td><td>-0.600966</td><td>-</td><td>AT1G13750</td><td>calcineurin-like phosphoesterase family protein</td><td>AT1G13740</td><td>AFP2 (ABI FIVE BINDING PROTEIN 2)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501067100000i">OMAT5P106710</a></td><td>-0.5817</td><td>-</td><td>AT5G23040</td><td>CDF1 (CELL GROWTH DEFECT FACTOR 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501139500000i">OMAT5P113950</a></td><td>-0.540395</td><td>-</td><td>AT5G53900</td><td>unknown protein</td><td>AT5G53895</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301046200000i">OMAT3P104620</a></td><td>-0.538555</td><td>-</td><td>AT3G13910</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501095900000i">OMAT5P109590</a></td><td>-0.536901</td><td>-</td><td>AT5G40470</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501179400000i">OMAT5P117940</a></td><td>-0.53464</td><td>-</td><td>AT5G65380</td><td>ripening-responsive protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101179200000i">OMAT1P117920</a></td><td>-0.531579</td><td>-</td><td>AT1G70780,AT1G70782</td><td>[AT1G70780]unknown protein, [AT1G70782]CPuORF28 (Conserved peptide upstream open reading frame 28)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401034100000i">OMAT4P103410</a></td><td>-0.521587</td><td>-</td><td>AT4G14900</td><td>hydroxyproline-rich glycoprotein family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501076000000i">OMAT5P107600</a></td><td>-0.517746</td><td>-</td><td>AT5G25350</td><td>EBF2 (EIN3-BINDING F BOX PROTEIN 2)</td><td>AT5G25340</td><td>unknown protein</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u200048600000i/OMAT2P004860-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009699</td><td>phenylpropanoid biosynthetic process</td><td>11/201</td><td>13.38</td><td>4.50e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009698</td><td>phenylpropanoid metabolic process</td><td>11/201</td><td>10.71</td><td>6.07e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006575</td><td>cellular amino acid derivative metabolic process</td><td>13/201</td><td>7.47</td><td>2.91e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0042398</td><td>cellular amino acid derivative biosynthetic process</td><td>11/201</td><td>8.58</td><td>7.46e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0019438</td><td>aromatic compound biosynthetic process</td><td>11/201</td><td>8.27</td><td>1.13e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>13/201</td><td>5.59</td><td>1.10e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006725</td><td>cellular aromatic compound metabolic process</td><td>11/201</td><td>5.07</td><td>2.19e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006519</td><td>cellular amino acid and derivative metabolic process</td><td>13/201</td><td>3.72</td><td>1.28e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>14/201</td><td>2.67</td><td>2.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>14/201</td><td>2.54</td><td>4.63e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044248</td><td>cellular catabolic process</td><td>10/201</td><td>2.76</td><td>1.14e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>11/201</td><td>2.41</td><td>2.28e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>11/201</td><td>2.29</td><td>3.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>17/201</td><td>1.88</td><td>4.35e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>83/201</td><td>3.40</td><td>2.98e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>130/201</td><td>1.41</td><td>2.11e-08</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>26/201</td><td>1.66</td><td>4.05e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>12/201</td><td>2.01</td><td>7.37e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020092</td><td>female gametophyte</td><td>12/201</td><td>4.41</td><td>4.06e-06</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>81/201</td><td>3.41</td><td>1.30e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>81/201</td><td>3.33</td><td>6.73e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>31/201</td><td>8.22</td><td>1.87e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>47/201</td><td>2.42</td><td>2.98e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>13/201</td><td>4.33</td><td>2.30e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>33/201</td><td>2.25</td><td>3.68e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>33/201</td><td>2.23</td><td>4.32e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>33/201</td><td>2.17</td><td>7.90e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>30/201</td><td>2.27</td><td>8.26e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>13/201</td><td>3.03</td><td>1.15e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>11/201</td><td>3.24</td><td>1.72e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>17/201</td><td>2.44</td><td>2.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subgroup</td><td>-</td><td>11/201</td><td>2.70</td><td>8.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>11/201</td><td>2.69</td><td>9.02e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>80/201</td><td>1.33</td><td>1.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/201</td><td>2.18</td><td>1.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>34/201</td><td>1.65</td><td>1.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>40/201</td><td>1.56</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>24/201</td><td>1.78</td><td>2.10e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G23910&keyword=dependent">3.00E-62</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>68/201</td><td>1.34</td><td>2.48e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>11/201</td><td>2.34</td><td>2.87e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/201</td><td>1.86</td><td>3.29e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/201</td><td>2.08</td><td>7.25e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>function</td><td>-</td><td>25/201</td><td>1.60</td><td>7.57e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>