OMAT2P109080
with_AGI_gene
0.83801400000000003665
<html><body><title>OMAT2P109080</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u201090800000i/OMAT2P109080.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u201090800000i/OMAT2P109080.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u201090800000i/OMAT2P109080.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500201800000i">OMAT5P020180</a></td><td>0.990828</td><td>-</td><td>AT5G65370</td><td>epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200041700000i">OMAT2P004170</a></td><td>0.990318</td><td>-</td><td>AT2G22121</td><td>LCR35 (Low-molecular-weight cysteine-rich 35)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500051500000i">OMAT5P005150</a></td><td>0.99</td><td>-</td><td>AT5G15000</td><td>Encodes a ECA1 gametogenesis related family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101168300000i">OMAT1P116830</a></td><td>0.989707</td><td>-</td><td>AT1G67775</td><td>CLE8 (CLAVATA3/ESR-RELATED 8)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501092500000i">OMAT5P109250</a></td><td>0.989409</td><td>-</td><td>AT5G39260</td><td>ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400063000000i">OMAT4P006300</a></td><td>0.989263</td><td>-</td><td>AT4G20800</td><td>FAD-binding domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401034500000i">OMAT4P103450</a></td><td>0.989039</td><td>-</td><td>AT4G15050</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501144300000i">OMAT5P114430</a></td><td>0.98899</td><td>-</td><td>AT5G55320</td><td>membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200004700000i">OMAT2P000470</a></td><td>0.988396</td><td>-</td><td>AT2G02498</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401081800000i">OMAT4P108180</a></td><td>0.988287</td><td>-</td><td>AT4G29280</td><td>LCR22 (Low-molecular-weight cysteine-rich 22)</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401034100000i">OMAT4P103410</a></td><td>-0.557772</td><td>-</td><td>AT4G14900</td><td>hydroxyproline-rich glycoprotein family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200059100000i">OMAT2P005910</a></td><td>-0.502915</td><td>-</td><td>AT2G27050</td><td>EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101115900000i">OMAT1P111590</a></td><td>-0.500975</td><td>-</td><td>AT1G47860</td><td>transposable element gene</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101179200000i">OMAT1P117920</a></td><td>-0.488015</td><td>-</td><td>AT1G70780,AT1G70782</td><td>[AT1G70780]unknown protein, [AT1G70782]CPuORF28 (Conserved peptide upstream open reading frame 28)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301046200000i">OMAT3P104620</a></td><td>-0.486003</td><td>-</td><td>AT3G13910</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100209900000i">OMAT1P020990</a></td><td>-0.485036</td><td>-</td><td>AT1G72630</td><td>ELF4-L2 (ELF4-Like 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401030600000i">OMAT4P103060</a></td><td>-0.482057</td><td>-</td><td>-</td><td>-</td><td>AT4G13940</td><td>MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100147700000i">OMAT1P014770</a></td><td>-0.473902</td><td>-</td><td>AT1G53400</td><td>unknown protein</td><td>AT1G53410</td><td>pre-tRNA</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301037500000i">OMAT3P103750</a></td><td>-0.470084</td><td>-</td><td>AT3G11450</td><td>DNAJ heat shock N-terminal domain-containing protein / cell division protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101044400000i">OMAT1P104440</a></td><td>-0.466124</td><td>-</td><td>AT1G13750</td><td>calcineurin-like phosphoesterase family protein</td><td>AT1G13740</td><td>AFP2 (ABI FIVE BINDING PROTEIN 2)</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u201090800000i/OMAT2P109080-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009698</td><td>phenylpropanoid metabolic process</td><td>10/200</td><td>9.78</td><td>7.58e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006575</td><td>cellular amino acid derivative metabolic process</td><td>12/200</td><td>6.93</td><td>2.46e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>13/200</td><td>5.61</td><td>1.04e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006725</td><td>cellular aromatic compound metabolic process</td><td>10/200</td><td>4.63</td><td>1.26e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006519</td><td>cellular amino acid and derivative metabolic process</td><td>12/200</td><td>3.45</td><td>5.31e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>13/200</td><td>2.50</td><td>8.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044248</td><td>cellular catabolic process</td><td>10/200</td><td>2.77</td><td>1.09e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>12/200</td><td>2.52</td><td>1.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>12/200</td><td>2.30</td><td>2.45e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>12/200</td><td>2.19</td><td>3.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>82/200</td><td>3.37</td><td>1.04e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>130/200</td><td>1.42</td><td>1.34e-08</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0004553</td><td>hydrolase activity, hydrolyzing O-glycosyl compounds</td><td>10/200</td><td>4.04</td><td>4.43e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016798</td><td>hydrolase activity, acting on glycosyl bonds</td><td>10/200</td><td>3.76</td><td>8.30e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>25/200</td><td>1.60</td><td>7.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020092</td><td>female gametophyte</td><td>11/200</td><td>4.06</td><td>2.02e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>81/200</td><td>3.43</td><td>8.66e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>81/200</td><td>3.34</td><td>4.51e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>27/200</td><td>7.19</td><td>1.47e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>42/200</td><td>2.17</td><td>4.57e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>31/200</td><td>2.12</td><td>2.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>31/200</td><td>2.11</td><td>2.60e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>14/200</td><td>3.28</td><td>2.85e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>31/200</td><td>2.05</td><td>4.48e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>11/200</td><td>3.68</td><td>5.27e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycoside</td><td>-</td><td>10/200</td><td>3.80</td><td>7.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>12/200</td><td>2.95</td><td>2.49e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>17/200</td><td>2.33</td><td>4.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catabolic</td><td>-</td><td>10/200</td><td>3.00</td><td>5.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>21/200</td><td>2.07</td><td>5.72e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>35/200</td><td>1.71</td><td>5.81e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>25/200</td><td>1.90</td><td>6.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>12/200</td><td>2.57</td><td>9.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>40/200</td><td>1.57</td><td>1.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carbohydrate</td><td>-</td><td>10/200</td><td>2.55</td><td>2.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>78/200</td><td>1.30</td><td>2.27e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subgroup</td><td>-</td><td>10/200</td><td>2.46</td><td>2.74e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>67/200</td><td>1.33</td><td>3.45e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>function</td><td>-</td><td>26/200</td><td>1.67</td><td>3.70e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G38255&keyword=function">1.00E-43</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>23/200</td><td>1.72</td><td>4.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>14/200</td><td>2.02</td><td>4.43e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>