0.67827400000000004354
OMAT3P014930
<html><body><title>OMAT3P014930</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300149300000i/OMAT3P014930.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300149300000i/OMAT3P014930.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300149300000i/OMAT3P014930.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200012700000i">OMAT2P001270</a></td><td>0.986651</td><td>-</td><td>AT2G05580</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100052600000i">OMAT1P005260</a></td><td>0.985612</td><td>-</td><td>-</td><td>-</td><td>AT1G14760</td><td>KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100230500000i">OMAT1P023050</a></td><td>0.985211</td><td>-</td><td>AT1G77950</td><td>AGL67 (AGAMOUS-LIKE 67)</td><td>AT1G77960</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401018500000i">OMAT4P101850</a></td><td>0.984025</td><td>-</td><td>AT4G09600</td><td>GASA3 (GAST1 PROTEIN HOMOLOG 3)</td><td>AT4G09590,AT4G09595</td><td>[AT4G09590]NHL22, [AT4G09595]transposable element gene</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500072100000i">OMAT5P007210</a></td><td>0.983382</td><td>-</td><td>-</td><td>-</td><td>AT5G20790</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101090800000i">OMAT1P109080</a></td><td>0.982083</td><td>-</td><td>AT1G28640</td><td>GDSL-motif lipase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101179900000i">OMAT1P117990</a></td><td>0.977897</td><td>-</td><td>AT1G70985</td><td>hydroxyproline-rich glycoprotein family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501074800000i">OMAT5P107480</a></td><td>0.97748</td><td>-</td><td>AT5G24950</td><td>CYP71A15</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100230450000i">OMAT1P023045</a></td><td>0.976735</td><td>-</td><td>AT1G77950</td><td>AGL67 (AGAMOUS-LIKE 67)</td><td>AT1G77960</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500190300000i">OMAT5P019030</a></td><td>0.976675</td><td>-</td><td>AT5G62490</td><td>ATHVA22B</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300152900000i">OMAT3P015290</a></td><td>-0.839792</td><td>-</td><td>AT3G55440</td><td>TPI (TRIOSEPHOSPHATE ISOMERASE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201108100000i">OMAT2P110810</a></td><td>-0.835856</td><td>-</td><td>AT2G42500</td><td>PP2A-4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301038900000i">OMAT3P103890</a></td><td>-0.834502</td><td>-</td><td>AT3G11770</td><td>nucleic acid binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401013000000i">OMAT4P101300</a></td><td>-0.827823</td><td>-</td><td>AT4G04720</td><td>CPK21</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401097000000i">OMAT4P109700</a></td><td>-0.796255</td><td>-</td><td>AT4G33530</td><td>KUP5</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101134600000i">OMAT1P113460</a></td><td>-0.794967</td><td>-</td><td>AT1G54410</td><td>dehydrin family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500169800000i">OMAT5P016980</a></td><td>-0.793391</td><td>-</td><td>AT5G57020</td><td>NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200111900000i">OMAT2P011190</a></td><td>-0.789004</td><td>-</td><td>AT2G41430</td><td>ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201064700000i">OMAT2P106470</a></td><td>-0.787714</td><td>-</td><td>AT2G30980</td><td>ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101041100000i">OMAT1P104110</a></td><td>-0.787246</td><td>-</td><td>AT1G12820</td><td>AFB3 (AUXIN SIGNALING F-BOX 3)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300149300000i/OMAT3P014930-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>12/200</td><td>2.30</td><td>2.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>11/200</td><td>2.33</td><td>3.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>10/200</td><td>2.30</td><td>4.58e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009719</td><td>response to endogenous stimulus</td><td>11/200</td><td>2.13</td><td>5.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>45/200</td><td>1.85</td><td>1.31e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>116/200</td><td>1.27</td><td>1.90e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>20/200</td><td>2.37</td><td>1.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>23/200</td><td>1.60</td><td>9.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>23/200</td><td>1.60</td><td>9.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>35/200</td><td>2.66</td><td>3.21e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>35/200</td><td>2.31</td><td>9.73e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>34/200</td><td>2.33</td><td>1.19e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>34/200</td><td>2.31</td><td>1.41e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>45/200</td><td>1.90</td><td>6.43e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>39/200</td><td>2.01</td><td>7.40e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>45/200</td><td>1.86</td><td>1.22e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>13/200</td><td>3.05</td><td>1.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>12/200</td><td>2.73</td><td>5.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>23/200</td><td>2.00</td><td>5.28e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>10/200</td><td>2.91</td><td>7.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>11/200</td><td>2.55</td><td>1.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>10/200</td><td>2.49</td><td>2.50e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>15/200</td><td>2.06</td><td>2.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/200</td><td>1.87</td><td>3.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>32/200</td><td>1.56</td><td>4.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/200</td><td>2.09</td><td>6.98e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>10/200</td><td>2.15</td><td>7.56e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene