<html><body><title>OMAT3P106100</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301061000000i/OMAT3P106100.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301061000000i/OMAT3P106100.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301061000000i/OMAT3P106100.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200139700000i">OMAT2P013970</a></td><td>0.992637</td><td>-</td><td>AT2G48140</td><td>EDA4 (embryo sac development arrest 4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201025700000i">OMAT2P102570</a></td><td>0.992621</td><td>-</td><td>AT2G18360</td><td>hydrolase, alpha/beta fold family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201110700000i">OMAT2P111070</a></td><td>0.983857</td><td>-</td><td>AT2G43390</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401109100000i">OMAT4P110910</a></td><td>0.971648</td><td>-</td><td>AT4G36610</td><td>hydrolase, alpha/beta fold family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501025400000i">OMAT5P102540</a></td><td>0.971215</td><td>-</td><td>AT5G09480</td><td>hydroxyproline-rich glycoprotein family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501062200000i">OMAT5P106220</a></td><td>0.969713</td><td>-</td><td>AT5G20860</td><td>pectinesterase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100175400000i">OMAT1P017540</a></td><td>0.969534</td><td>-</td><td>AT1G64000</td><td>WRKY56</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500058800000i">OMAT5P005880</a></td><td>0.968662</td><td>-</td><td>AT5G16770</td><td>AtMYB9 (myb domain protein 9)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101120400000i">OMAT1P112040</a></td><td>0.967071</td><td>-</td><td>-</td><td>-</td><td>AT1G49570</td><td>peroxidase, putative</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300138800000i">OMAT3P013880</a></td><td>0.964942</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500197600000i">OMAT5P019760</a></td><td>-0.570199</td><td>-</td><td>AT5G64300</td><td>ATGCH</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301013800000i">OMAT3P101380</a></td><td>-0.52615</td><td>-</td><td>AT3G04340</td><td>emb2458 (embryo defective 2458)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201105500000i">OMAT2P110550</a></td><td>-0.520694</td><td>-</td><td>AT2G41720</td><td>EMB2654 (EMBRYO DEFECTIVE 2654)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501054300000i">OMAT5P105430</a></td><td>-0.519755</td><td>-</td><td>AT5G18570</td><td>GTP1/OBG family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201042900000i">OMAT2P104290</a></td><td>-0.506546</td><td>-</td><td>AT2G24120</td><td>SCA3 (SCABRA 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100123950000i">OMAT1P012395</a></td><td>-0.499598</td><td>-</td><td>AT1G42470</td><td>patched family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401072100000i">OMAT4P107210</a></td><td>-0.496358</td><td>-</td><td>AT4G26370</td><td>antitermination NusB domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101029900000i">OMAT1P102990</a></td><td>-0.494757</td><td>-</td><td>AT1G09620</td><td>ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201067600000i">OMAT2P106760</a></td><td>-0.494048</td><td>-</td><td>AT2G31890</td><td>RAP</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401066700000i">OMAT4P106670</a></td><td>-0.490762</td><td>-</td><td>AT4G24770</td><td>RBP31 (31-KDA RNA BINDING PROTEIN)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301061000000i/OMAT3P106100-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 6.87e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>6.87e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>22/200</td><td>5.06</td><td>9.57e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006631</td><td>fatty acid metabolic process</td><td>10/200</td><td>8.75</td><td>2.41e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0016053</td><td>organic acid biosynthetic process</td><td>11/200</td><td>5.08</td><td>2.14e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0008610</td><td>lipid biosynthetic process</td><td>11/200</td><td>5.01</td><td>2.46e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044255</td><td>cellular lipid metabolic process</td><td>12/200</td><td>4.46</td><td>3.58e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>16/200</td><td>3.52</td><td>3.65e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0043436</td><td>oxoacid metabolic process</td><td>15/200</td><td>3.41</td><td>1.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006082</td><td>organic acid metabolic process</td><td>15/200</td><td>3.40</td><td>1.06e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>25/200</td><td>2.44</td><td>1.28e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0042180</td><td>cellular ketone metabolic process</td><td>15/200</td><td>3.34</td><td>1.30e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>25/200</td><td>2.43</td><td>1.35e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>10/200</td><td>4.32</td><td>2.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0033036</td><td>macromolecule localization</td><td>11/200</td><td>3.18</td><td>2.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>20/200</td><td>2.23</td><td>2.82e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>11/200</td><td>2.11</td><td>6.45e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>11/200</td><td>2.10</td><td>6.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>11/200</td><td>2.01</td><td>9.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>74/200</td><td>3.05</td><td>3.09e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>135/200</td><td>1.48</td><td>1.61e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>29/200</td><td>3.44</td><td>1.67e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>10/200</td><td>4.99</td><td>6.22e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>31/200</td><td>2.16</td><td>1.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>31/200</td><td>2.16</td><td>1.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>29/200</td><td>2.14</td><td>3.64e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>13/200</td><td>2.19</td><td>2.76e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>25/200</td><td>1.60</td><td>7.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>74/200</td><td>3.05</td><td>2.63e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>73/200</td><td>3.09</td><td>2.79e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>24/200</td><td>10.29</td><td>1.54e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>56/200</td><td>2.89</td><td>3.99e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>44/200</td><td>3.35</td><td>2.32e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>19/200</td><td>5.53</td><td>3.29e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>40/200</td><td>2.74</td><td>1.39e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>19/200</td><td>5.06</td><td>1.51e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>40/200</td><td>2.72</td><td>1.72e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transfer</td><td>-</td><td>11/200</td><td>9.58</td><td>2.17e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>trypsin</td><td>-</td><td>10/200</td><td>10.66</td><td>3.07e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>40/200</td><td>2.65</td><td>3.89e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>process</td><td>-</td><td>44/200</td><td>2.15</td><td>3.14e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>14/200</td><td>4.68</td><td>3.93e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>16/200</td><td>3.99</td><td>6.87e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>acting</td><td>-</td><td>12/200</td><td>4.45</td><td>3.67e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>24/200</td><td>2.47</td><td>1.55e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxygen</td><td>-</td><td>10/200</td><td>4.34</td><td>2.29e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>20/200</td><td>2.62</td><td>2.94e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>26/200</td><td>2.26</td><td>3.29e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>19/200</td><td>2.66</td><td>3.59e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>shoot</td><td>-</td><td>10/200</td><td>3.77</td><td>8.13e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>18/200</td><td>2.47</td><td>1.45e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>13/200</td><td>2.96</td><td>1.48e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>protease</td><td>-</td><td>11/200</td><td>3.29</td><td>1.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>12/200</td><td>2.57</td><td>8.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>electron</td><td>-</td><td>10/200</td><td>2.81</td><td>9.80e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>13/200</td><td>2.42</td><td>1.11e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>15/200</td><td>2.16</td><td>1.76e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>11/200</td><td>2.22</td><td>4.36e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transporter</td><td>-</td><td>14/200</td><td>2.01</td><td>4.46e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
OMAT3P106100
with_AGI_gene
0.70430899999999996286