with_AGI_gene <html><body><title>OMAT3P112040</title>(&uarr; Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301120400000i/OMAT3P112040.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301120400000i/OMAT3P112040.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301120400000i/OMAT3P112040.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201008900000i">OMAT2P100890</a></td><td>0.97129</td><td>-</td><td>AT2G04063</td><td>glycine-rich protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401018500000i">OMAT4P101850</a></td><td>0.957862</td><td>-</td><td>AT4G09600</td><td>GASA3 (GAST1 PROTEIN HOMOLOG 3)</td><td>AT4G09590,AT4G09595</td><td>[AT4G09590]NHL22, [AT4G09595]transposable element gene</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200077700000i">OMAT2P007770</a></td><td>0.953358</td><td>-</td><td>AT2G32210</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300125300000i">OMAT3P012530</a></td><td>0.952904</td><td>-</td><td>AT3G48270</td><td>CYP71A26</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401121100000i">OMAT4P112110</a></td><td>0.952716</td><td>-</td><td>-</td><td>-</td><td>AT4G39675</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100053100000i">OMAT1P005310</a></td><td>0.951751</td><td>-</td><td>-</td><td>-</td><td>AT1G14940</td><td>major latex protein-related / MLP-related</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500190300000i">OMAT5P019030</a></td><td>0.95172</td><td>-</td><td>AT5G62490</td><td>ATHVA22B</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300108500000i">OMAT3P010850</a></td><td>0.950563</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100012400000i">OMAT1P001240</a></td><td>0.949878</td><td>-</td><td>AT1G03990</td><td>alcohol oxidase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101082300000i">OMAT1P108230</a></td><td>0.949475</td><td>-</td><td>AT1G26400</td><td>FAD-binding domain-containing protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300152900000i">OMAT3P015290</a></td><td>-0.84924</td><td>-</td><td>AT3G55440</td><td>TPI (TRIOSEPHOSPHATE ISOMERASE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201108100000i">OMAT2P110810</a></td><td>-0.835115</td><td>-</td><td>AT2G42500</td><td>PP2A-4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300029400000i">OMAT3P002940</a></td><td>-0.815382</td><td>-</td><td>AT3G08550</td><td>KOB1 (KOBITO)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201113400000i">OMAT2P111340</a></td><td>-0.785887</td><td>-</td><td>AT2G44090</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501035300000i">OMAT5P103530</a></td><td>-0.777003</td><td>-</td><td>AT5G12440</td><td>nucleic acid binding / nucleotide binding / zinc ion binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500040000000i">OMAT5P004000</a></td><td>-0.772858</td><td>-</td><td>AT5G11710,AT5G11720</td><td>[AT5G11710]epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, [AT5G11720]alpha-glucosidase 1 (AGLU1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101510000i">OMAT4P110151</a></td><td>-0.772262</td><td>-</td><td>AT4G34720</td><td>AVA-P1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301133300000i">OMAT3P113330</a></td><td>-0.772134</td><td>-</td><td>AT3G55020</td><td>RabGAP/TBC domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201064700000i">OMAT2P106470</a></td><td>-0.767534</td><td>-</td><td>AT2G30980</td><td>ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300040700000i">OMAT3P004070</a></td><td>-0.759735</td><td>-</td><td>AT3G11590</td><td>unknown protein</td><td>AT3G11591</td><td>unknown protein</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u301120400000i/OMAT3P112040-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>13/200</td><td>2.50</td><td>8.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>21/200</td><td>1.84</td><td>2.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009725</td><td>response to hormone stimulus</td><td>10/200</td><td>2.12</td><td>8.35e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016798</td><td>hydrolase activity, acting on glycosyl bonds</td><td>10/200</td><td>3.76</td><td>8.30e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>27/200</td><td>1.88</td><td>5.38e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>27/200</td><td>1.88</td><td>5.38e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>18/200</td><td>2.13</td><td>8.56e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>23/200</td><td>1.69</td><td>4.78e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>31/200</td><td>2.36</td><td>2.69e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>31/200</td><td>2.05</td><td>4.48e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>30/200</td><td>2.06</td><td>5.58e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>30/200</td><td>2.04</td><td>6.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycoside</td><td>-</td><td>10/200</td><td>3.80</td><td>7.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>73/200</td><td>1.45</td><td>1.49e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>35/200</td><td>1.81</td><td>1.99e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>11/200</td><td>2.97</td><td>3.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>11/200</td><td>2.74</td><td>7.70e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>electron</td><td>-</td><td>10/200</td><td>2.81</td><td>9.80e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>11/200</td><td>2.58</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>11/200</td><td>2.55</td><td>1.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>12/200</td><td>2.42</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>30/200</td><td>1.67</td><td>1.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/200</td><td>1.87</td><td>3.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>10/200</td><td>2.28</td><td>4.91e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>64/200</td><td>1.31</td><td>5.61e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>20/200</td><td>1.74</td><td>5.69e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>31/200</td><td>1.51</td><td>7.38e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html> 0.60529399999999999871 OMAT3P112040