with_AGI_gene
0.79240600000000005476
<html><body><title>OMAT4P001040</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400010400000i/OMAT4P001040.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400010400000i/OMAT4P001040.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400010400000i/OMAT4P001040.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501013600000i">OMAT5P101360</a></td><td>0.985363</td><td>-</td><td>AT5G05320</td><td>monooxygenase, putative (MO3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501108300000i">OMAT5P110830</a></td><td>0.984721</td><td>-</td><td>AT5G44280</td><td>RING1A (RING 1A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200088900000i">OMAT2P008890</a></td><td>0.983525</td><td>-</td><td>AT2G35550</td><td>BPC7 (BASIC PENTACYSTEINE 7)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500156500000i">OMAT5P015650</a></td><td>0.98298</td><td>-</td><td>AT5G53470</td><td>ACBP1 (ACYL-COA BINDING PROTEIN 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101179400000i">OMAT1P117940</a></td><td>0.982459</td><td>-</td><td>AT1G70840</td><td>MLP31 (MLP-LIKE PROTEIN 31)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301066100000i">OMAT3P106610</a></td><td>0.982174</td><td>-</td><td>AT3G19920</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400088200000i">OMAT4P008820</a></td><td>0.981783</td><td>-</td><td>AT4G27530</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501101700000i">OMAT5P110170</a></td><td>0.981633</td><td>-</td><td>AT5G42690</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500187100000i">OMAT5P018710</a></td><td>0.981134</td><td>-</td><td>AT5G61490</td><td>FUNCTIONS IN: molecular_function unknown</td><td>AT5G61495</td><td>unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101168000000i">OMAT1P116800</a></td><td>0.981</td><td>-</td><td>AT1G67600</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101166700000i">OMAT1P116670</a></td><td>-0.868163</td><td>-</td><td>AT1G67090</td><td>RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401101510000i">OMAT4P110151</a></td><td>-0.855057</td><td>-</td><td>AT4G34720</td><td>AVA-P1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201108100000i">OMAT2P110810</a></td><td>-0.851275</td><td>-</td><td>AT2G42500</td><td>PP2A-4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301125000000i">OMAT3P112500</a></td><td>-0.841892</td><td>-</td><td>AT3G52880</td><td>monodehydroascorbate reductase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501023700000i">OMAT5P102370</a></td><td>-0.822999</td><td>-</td><td>AT5G08530</td><td>CI51 (51 kDa subunit of complex I)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100074300000i">OMAT1P007430</a></td><td>-0.820334</td><td>-</td><td>AT1G20260</td><td>hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300124800000i">OMAT3P012480</a></td><td>-0.80966</td><td>-</td><td>AT3G48140</td><td>senescence-associated protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101134600000i">OMAT1P113460</a></td><td>-0.80842</td><td>-</td><td>AT1G54410</td><td>dehydrin family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501035200000i">OMAT5P103520</a></td><td>-0.793365</td><td>-</td><td>AT5G12430</td><td>DNAJ heat shock N-terminal domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301097200000i">OMAT3P109720</a></td><td>-0.793207</td><td>-</td><td>AT3G42050</td><td>vacuolar ATP synthase subunit H family protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u400010400000i/OMAT4P001040-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>11/200</td><td>4.04</td><td>2.15e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>11/200</td><td>3.85</td><td>3.41e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>15/200</td><td>2.53</td><td>3.26e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>13/200</td><td>2.67</td><td>4.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>13/200</td><td>2.36</td><td>1.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0022414</td><td>reproductive process</td><td>13/200</td><td>2.16</td><td>3.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>18/200</td><td>2.13</td><td>8.56e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>52/200</td><td>1.60</td><td>1.45e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>52/200</td><td>1.60</td><td>1.45e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>127/200</td><td>1.21</td><td>5.46e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>126/200</td><td>1.21</td><td>6.66e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>129/200</td><td>1.19</td><td>1.33e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>118/200</td><td>1.21</td><td>1.66e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>118/200</td><td>1.20</td><td>2.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>118/200</td><td>1.20</td><td>2.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>122/200</td><td>1.19</td><td>2.24e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>108/200</td><td>1.20</td><td>4.29e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>113/200</td><td>1.17</td><td>8.30e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>128/200</td><td>1.22</td><td>3.37e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>119/200</td><td>1.21</td><td>1.57e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>122/200</td><td>1.20</td><td>1.66e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>117/200</td><td>1.21</td><td>1.77e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>108/200</td><td>1.19</td><td>5.16e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>82/200</td><td>1.68</td><td>6.75e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>40/200</td><td>2.07</td><td>3.01e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>30/200</td><td>2.28</td><td>7.45e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>31/200</td><td>2.12</td><td>2.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>31/200</td><td>2.11</td><td>2.60e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>31/200</td><td>2.05</td><td>4.48e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>71/200</td><td>1.41</td><td>4.61e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>16/200</td><td>2.29</td><td>6.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>79/200</td><td>1.32</td><td>1.41e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>11/200</td><td>2.36</td><td>2.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/200</td><td>2.09</td><td>6.98e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>11/200</td><td>2.04</td><td>8.27e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
OMAT4P001040