<html><body><title>OMAT4P102450</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u401024500000i/OMAT4P102450.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u401024500000i/OMAT4P102450.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u401024500000i/OMAT4P102450.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100023500000i">OMAT1P002350</a></td><td>0.929753</td><td>-</td><td>AT1G07320</td><td>RPL4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101158700000i">OMAT1P115870</a></td><td>0.922856</td><td>-</td><td>AT1G64510</td><td>ribosomal protein S6 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501083900000i">OMAT5P108390</a></td><td>0.920678</td><td>-</td><td>AT5G28750</td><td>thylakoid assembly protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500050900000i">OMAT5P005090</a></td><td>0.917886</td><td>-</td><td>AT5G14910</td><td>heavy-metal-associated domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501040300000i">OMAT5P104030</a></td><td>0.903906</td><td>-</td><td>AT5G14320</td><td>30S ribosomal protein S13, chloroplast (CS13)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300123700000i">OMAT3P012370</a></td><td>0.898931</td><td>-</td><td>AT3G47650</td><td>bundle-sheath defective protein 2 family / bsd2 family</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200049200000i">OMAT2P004920</a></td><td>0.896456</td><td>-</td><td>AT2G24090</td><td>ribosomal protein L35 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501084700000i">OMAT5P108470</a></td><td>0.895167</td><td>-</td><td>AT5G30510</td><td>RPS1 (RIBOSOMAL PROTEIN S1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501022800000i">OMAT5P102280</a></td><td>0.895092</td><td>-</td><td>AT5G08280</td><td>HEMC (HYDROXYMETHYLBILANE SYNTHASE)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100115500000i">OMAT1P011550</a></td><td>0.883318</td><td>-</td><td>AT1G32990</td><td>PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100027300000i">OMAT1P002730</a></td><td>-0.90506</td><td>-</td><td>AT1G08370</td><td>DCP1 (decapping 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500007900000i">OMAT5P000790</a></td><td>-0.904624</td><td>-</td><td>AT5G02880</td><td>UPL4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200011300000i">OMAT2P001130</a></td><td>-0.892959</td><td>-</td><td>AT2G04880</td><td>ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400078800000i">OMAT4P007880</a></td><td>-0.892623</td><td>-</td><td>AT4G25230</td><td>RIN2 (RPM1 INTERACTING PROTEIN 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300011500000i">OMAT3P001150</a></td><td>-0.872467</td><td>-</td><td>AT3G03440</td><td>armadillo/beta-catenin repeat family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400077000000i">OMAT4P007700</a></td><td>-0.861618</td><td>-</td><td>AT4G24690</td><td>ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101157600000i">OMAT1P115760</a></td><td>-0.856841</td><td>-</td><td>AT1G64140,AT1G64142</td><td>[AT1G64140]FUNCTIONS IN: molecular_function unknown, [AT1G64142]CPuORF23 (Conserved peptide upstream open reading frame 23)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300121300000i">OMAT3P012130</a></td><td>-0.851654</td><td>-</td><td>AT3G47060</td><td>ftsh7 (FtsH protease 7)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100089800000i">OMAT1P008980</a></td><td>-0.849674</td><td>-</td><td>AT1G24460</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400135100000i">OMAT4P013510</a></td><td>-0.836337</td><td>-</td><td>AT4G38930</td><td>ubiquitin fusion degradation UFD1 family protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u401024500000i/OMAT4P102450-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 9.64e-55</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>9.64e-55 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>39/200</td><td>5.38</td><td>9.88e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044237</td><td>cellular metabolic process</td><td>99/200</td><td>2.10</td><td>4.32e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0009058</td><td>biosynthetic process</td><td>72/200</td><td>2.47</td><td>1.12e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044249</td><td>cellular biosynthetic process</td><td>70/200</td><td>2.49</td><td>2.26e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0018130</td><td>heterocycle biosynthetic process</td><td>13/200</td><td>15.22</td><td>2.09e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0044267</td><td>cellular protein metabolic process</td><td>54/200</td><td>2.65</td><td>4.42e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0044271</td><td>cellular nitrogen compound biosynthetic process</td><td>18/200</td><td>6.80</td><td>2.76e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>13/200</td><td>10.15</td><td>5.27e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0019538</td><td>protein metabolic process</td><td>56/200</td><td>2.43</td><td>5.35e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>13/200</td><td>9.83</td><td>8.11e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0051188</td><td>cofactor biosynthetic process</td><td>10/200</td><td>10.66</td><td>3.07e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>48/200</td><td>2.36</td><td>4.32e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>86/200</td><td>1.74</td><td>5.29e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0051186</td><td>cofactor metabolic process</td><td>11/200</td><td>7.40</td><td>3.85e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0046483</td><td>heterocycle metabolic process</td><td>14/200</td><td>5.17</td><td>1.11e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0043436</td><td>oxoacid metabolic process</td><td>18/200</td><td>4.09</td><td>1.12e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006082</td><td>organic acid metabolic process</td><td>18/200</td><td>4.08</td><td>1.16e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0042180</td><td>cellular ketone metabolic process</td><td>18/200</td><td>4.01</td><td>1.49e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>23/200</td><td>3.10</td><td>4.55e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0034645</td><td>cellular macromolecule biosynthetic process</td><td>45/200</td><td>2.09</td><td>5.24e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>63/200</td><td>1.79</td><td>5.52e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0009059</td><td>macromolecule biosynthetic process</td><td>45/200</td><td>2.08</td><td>5.71e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>25/200</td><td>2.78</td><td>1.22e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>65/200</td><td>1.68</td><td>3.26e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0009416</td><td>response to light stimulus</td><td>12/200</td><td>4.17</td><td>7.36e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006520</td><td>cellular amino acid metabolic process</td><td>10/200</td><td>4.75</td><td>9.93e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009314</td><td>response to radiation</td><td>12/200</td><td>4.04</td><td>1.04e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0016053</td><td>organic acid biosynthetic process</td><td>10/200</td><td>4.62</td><td>1.29e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0044106</td><td>cellular amine metabolic process</td><td>10/200</td><td>4.40</td><td>2.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009266</td><td>response to temperature stimulus</td><td>10/200</td><td>4.39</td><td>2.08e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009308</td><td>amine metabolic process</td><td>10/200</td><td>4.00</td><td>4.84e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>36/200</td><td>1.81</td><td>1.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051707</td><td>response to other organism</td><td>11/200</td><td>3.28</td><td>1.54e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0033036</td><td>macromolecule localization</td><td>11/200</td><td>3.18</td><td>2.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>35/200</td><td>1.80</td><td>2.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009607</td><td>response to biotic stimulus</td><td>11/200</td><td>3.04</td><td>3.07e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>12/200</td><td>2.64</td><td>7.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006519</td><td>cellular amino acid and derivative metabolic process</td><td>10/200</td><td>2.88</td><td>8.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>11/200</td><td>2.53</td><td>1.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>11/200</td><td>2.42</td><td>2.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0009536</td><td>plastid</td><td>148/200</td><td>8.01</td><td>3.15e-110</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G12060&keyword=plastid">3.64E-21</a></td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0044435</td><td>plastid part</td><td>105/200</td><td>18.46</td><td>2.03e-109</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0044434</td><td>chloroplast part</td><td>103/200</td><td>18.60</td><td>2.04e-107</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0009532</td><td>plastid stroma</td><td>69/200</td><td>27.91</td><td>1.56e-82</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0044444</td><td>cytoplasmic part</td><td>156/200</td><td>4.49</td><td>2.80e-80</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>157/200</td><td>4.19</td><td>1.36e-76</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043231</td><td>intracellular membrane-bounded organelle</td><td>159/200</td><td>3.62</td><td>1.59e-68</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043227</td><td>membrane-bounded organelle</td><td>159/200</td><td>3.62</td><td>1.62e-68</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>106/200</td><td>7.39</td><td>2.84e-68</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>106/200</td><td>7.39</td><td>3.10e-68</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>159/200</td><td>3.44</td><td>2.87e-65</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>161/200</td><td>3.16</td><td>4.52e-61</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>162/200</td><td>3.04</td><td>2.55e-59</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0009579</td><td>thylakoid</td><td>48/200</td><td>19.28</td><td>7.21e-49</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0009526</td><td>plastid envelope</td><td>48/200</td><td>17.46</td><td>1.00e-46</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>182/200</td><td>1.99</td><td>2.59e-43</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0042651</td><td>thylakoid membrane</td><td>38/200</td><td>20.99</td><td>2.34e-40</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0034357</td><td>photosynthetic membrane</td><td>38/200</td><td>20.72</td><td>3.98e-40</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0055035</td><td>plastid thylakoid membrane</td><td>37/200</td><td>21.36</td><td>1.25e-39</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0044436</td><td>thylakoid part</td><td>38/200</td><td>18.42</td><td>4.34e-38</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0031967</td><td>organelle envelope</td><td>48/200</td><td>11.52</td><td>6.34e-38</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0031975</td><td>envelope</td><td>48/200</td><td>11.52</td><td>6.34e-38</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0031976</td><td>plastid thylakoid</td><td>37/200</td><td>18.59</td><td>2.84e-37</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0031984</td><td>organelle subcompartment</td><td>37/200</td><td>18.48</td><td>3.58e-37</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>31/200</td><td>12.10</td><td>1.44e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>31/200</td><td>8.89</td><td>1.80e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>35/200</td><td>5.87</td><td>3.88e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>35/200</td><td>5.87</td><td>3.88e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0016020</td><td>membrane</td><td>67/200</td><td>2.45</td><td>2.29e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0048046</td><td>apoplast</td><td>14/200</td><td>7.10</td><td>1.67e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>10/200</td><td>6.16</td><td>8.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>31/200</td><td>14.32</td><td>7.30e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0003723</td><td>RNA binding</td><td>18/200</td><td>2.59</td><td>7.59e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G12060&keyword=binding">3.00E-10</a></td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>181/200</td><td>2.47</td><td>1.51e-58</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>183/200</td><td>2.40</td><td>2.56e-58</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>181/200</td><td>2.34</td><td>9.64e-55</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>184/200</td><td>2.23</td><td>1.70e-53</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>182/200</td><td>2.12</td><td>7.26e-48</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>173/200</td><td>2.23</td><td>1.83e-45</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>184/200</td><td>2.00</td><td>3.41e-45</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>178/200</td><td>2.11</td><td>6.95e-45</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>181/200</td><td>2.05</td><td>7.51e-45</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>174/200</td><td>2.17</td><td>3.70e-44</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>176/200</td><td>2.10</td><td>3.22e-43</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>179/200</td><td>2.04</td><td>3.32e-43</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>183/200</td><td>1.94</td><td>3.53e-42</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>183/200</td><td>1.94</td><td>3.53e-42</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>175/200</td><td>2.08</td><td>4.06e-42</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>181/200</td><td>1.96</td><td>1.58e-41</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>172/200</td><td>2.12</td><td>2.36e-41</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>183/200</td><td>1.89</td><td>2.23e-40</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>178/200</td><td>1.98</td><td>2.87e-40</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>183/200</td><td>1.87</td><td>1.85e-39</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>183/200</td><td>1.86</td><td>4.48e-39</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>183/200</td><td>1.86</td><td>4.48e-39</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>184/200</td><td>1.79</td><td>4.80e-37</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>167/200</td><td>2.01</td><td>1.88e-35</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>182/200</td><td>1.75</td><td>6.10e-34</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>182/200</td><td>1.74</td><td>1.65e-33</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>184/200</td><td>1.69</td><td>7.54e-33</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>156/200</td><td>1.73</td><td>2.65e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0006016</td><td>leaf epidermis</td><td>51/200</td><td>4.59</td><td>3.32e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0006035</td><td>shoot epidermis</td><td>51/200</td><td>4.55</td><td>4.52e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000293</td><td>guard cell</td><td>50/200</td><td>4.65</td><td>4.85e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000351</td><td>guard mother cell</td><td>50/200</td><td>4.63</td><td>5.89e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0000070</td><td>meristemoid</td><td>50/200</td><td>4.62</td><td>6.33e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0000349</td><td>epidermal initial</td><td>50/200</td><td>4.43</td><td>3.69e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0004011</td><td>initial cell</td><td>50/200</td><td>4.41</td><td>4.85e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0004010</td><td>meristematic cell</td><td>50/200</td><td>4.40</td><td>5.20e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0005679</td><td>epidermis</td><td>51/200</td><td>4.12</td><td>3.64e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009014</td><td>dermal tissue</td><td>51/200</td><td>4.12</td><td>3.71e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0004013</td><td>epidermal cell</td><td>50/200</td><td>4.19</td><td>4.03e-19</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>182/200</td><td>2.37</td><td>2.75e-56</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>182/200</td><td>2.37</td><td>3.02e-56</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>183/200</td><td>2.18</td><td>9.85e-51</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>183/200</td><td>2.17</td><td>1.02e-50</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>183/200</td><td>2.16</td><td>3.35e-50</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>176/200</td><td>2.14</td><td>1.78e-44</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>173/200</td><td>2.17</td><td>7.76e-44</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>174/200</td><td>2.12</td><td>1.05e-42</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>179/200</td><td>1.99</td><td>2.95e-41</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>179/200</td><td>1.98</td><td>6.02e-41</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>173/200</td><td>2.08</td><td>6.32e-41</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>181/200</td><td>1.87</td><td>5.29e-38</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>182/200</td><td>1.84</td><td>9.72e-38</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>183/200</td><td>1.80</td><td>1.78e-36</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>183/200</td><td>1.75</td><td>1.86e-34</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>chloroplast</td><td>-</td><td>137/200</td><td>7.76</td><td>2.85e-97</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G12060&keyword=chloroplast">3.00E-10</a></td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stroma</td><td>-</td><td>48/200</td><td>25.75</td><td>2.81e-55</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>thylakoid</td><td>-</td><td>40/200</td><td>18.79</td><td>2.19e-40</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>35/200</td><td>13.26</td><td>4.70e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>35/200</td><td>11.59</td><td>5.22e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>envelope</td><td>-</td><td>30/200</td><td>13.13</td><td>7.16e-26</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>32/200</td><td>11.42</td><td>1.57e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>components</td><td>-</td><td>26/200</td><td>16.01</td><td>5.46e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>translation</td><td>-</td><td>39/200</td><td>7.87</td><td>1.11e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>structural</td><td>-</td><td>33/200</td><td>9.41</td><td>1.50e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>plastid</td><td>-</td><td>18/200</td><td>11.92</td><td>1.27e-15</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G12060&keyword=plastid">3.64E-21</a></td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>bacterial</td><td>-</td><td>17/200</td><td>11.26</td><td>1.88e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>biogenesis</td><td>-</td><td>12/200</td><td>8.83</td><td>1.35e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>25/200</td><td>3.50</td><td>1.45e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>53/200</td><td>1.99</td><td>1.96e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>light</td><td>-</td><td>13/200</td><td>4.87</td><td>5.78e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>49/200</td><td>1.92</td><td>1.84e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthesis</td><td>-</td><td>10/200</td><td>4.12</td><td>3.71e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>defective</td><td>-</td><td>10/200</td><td>4.09</td><td>3.97e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>19/200</td><td>2.60</td><td>4.79e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>38/200</td><td>1.86</td><td>6.18e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>28/200</td><td>2.07</td><td>8.65e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>34/200</td><td>1.90</td><td>9.73e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>11/200</td><td>3.26</td><td>1.64e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>electron</td><td>-</td><td>11/200</td><td>3.09</td><td>2.68e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>16/200</td><td>2.18</td><td>1.18e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G12060&keyword=subunit">3.00E-10</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/200</td><td>1.87</td><td>3.10e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>35/200</td><td>1.52</td><td>4.58e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>14/200</td><td>2.01</td><td>4.60e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>10/200</td><td>2.28</td><td>4.91e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
with_AGI_gene
OMAT4P102450
0.82114399999999998503