OMAT5P002820
0.7807870000000000088
with_AGI_gene
<html><body><title>OMAT5P002820</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500028200000i/OMAT5P002820.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500028200000i/OMAT5P002820.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500028200000i/OMAT5P002820.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100079000000i">OMAT1P007900</a></td><td>0.983953</td><td>-</td><td>AT1G21690</td><td>emb1968 (embryo defective 1968)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400096900000i">OMAT4P009690</a></td><td>0.982718</td><td>-</td><td>AT4G29430</td><td>rps15ae (ribosomal protein S15A E)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201110000000i">OMAT2P111000</a></td><td>0.982225</td><td>-</td><td>AT2G43130</td><td>ARA4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300008200000i">OMAT3P000820</a></td><td>0.982062</td><td>-</td><td>AT3G02790</td><td>zinc finger (C2H2 type) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201099400000i">OMAT2P109940</a></td><td>0.978696</td><td>-</td><td>AT2G40220</td><td>ABI4 (ABA INSENSITIVE 4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500146800000i">OMAT5P014680</a></td><td>0.977668</td><td>-</td><td>AtsnoR29-1,AT5G51174,AtsnoR30,AtsnoR31</td><td>[AtsnoR29-1]AtsnoR29-1, [AT5G51174]SNOR30, [AtsnoR30]AtsnoR30, [AtsnoR31]AtsnoR31</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400126900000i">OMAT4P012690</a></td><td>0.976341</td><td>-</td><td>-</td><td>-</td><td>AT4G36880</td><td>CP1 (CYSTEINE PROTEINASE1)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100232300000i">OMAT1P023230</a></td><td>0.975455</td><td>-</td><td>Ath-127bsnoR76,AT1G78206,ath-MIR775</td><td>[Ath-127bsnoR76]Ath-127bsnoR76, [AT1G78206]MIR775a, [ath-MIR775]ath-MIR775</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101091800000i">OMAT1P109180</a></td><td>0.975301</td><td>-</td><td>AT1G29080</td><td>peptidase C1A papain family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400068200000i">OMAT4P006820</a></td><td>0.975077</td><td>-</td><td>AtsnoR109</td><td>AtsnoR109</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100075400000i">OMAT1P007540</a></td><td>-0.706563</td><td>-</td><td>AT1G20620</td><td>CAT3 (CATALASE 3)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101106700000i">OMAT1P110670</a></td><td>-0.702783</td><td>-</td><td>AT1G34220</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201002900000i">OMAT2P100290</a></td><td>-0.65331</td><td>-</td><td>AT2G01690</td><td>binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401029300000i">OMAT4P102930</a></td><td>-0.608247</td><td>-</td><td>AT4G13460</td><td>SUVH9</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201097700000i">OMAT2P109770</a></td><td>-0.593043</td><td>-</td><td>AT2G39720</td><td>RHC2A</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101002400000i">OMAT1P100240</a></td><td>-0.584335</td><td>-</td><td>AT1G01650</td><td>aspartic-type endopeptidase/ peptidase</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401042300000i">OMAT4P104230</a></td><td>-0.584065</td><td>-</td><td>AT4G17170</td><td>RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101121900000i">OMAT1P112190</a></td><td>-0.57858</td><td>-</td><td>AT1G50020</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301040700000i">OMAT3P104070</a></td><td>-0.575945</td><td>-</td><td>AT3G12400</td><td>ELC</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201080300000i">OMAT2P108030</a></td><td>-0.574789</td><td>-</td><td>AT2G35680</td><td>dual specificity protein phosphatase family protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u500028200000i/OMAT5P002820-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.63e-16</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.63e-16 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042254</td><td>ribosome biogenesis</td><td>28/204</td><td>21.43</td><td>1.75e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022613</td><td>ribonucleoprotein complex biogenesis</td><td>28/204</td><td>20.75</td><td>4.61e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006364</td><td>rRNA processing</td><td>17/204</td><td>26.65</td><td>2.95e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0009451</td><td>RNA modification</td><td>17/204</td><td>21.99</td><td>1.11e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006396</td><td>RNA processing</td><td>18/204</td><td>7.97</td><td>1.78e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0010467</td><td>gene expression</td><td>55/204</td><td>2.65</td><td>2.86e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0006412</td><td>translation</td><td>31/204</td><td>4.19</td><td>3.16e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0043170</td><td>macromolecule metabolic process</td><td>74/204</td><td>1.87</td><td>4.52e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044238</td><td>primary metabolic process</td><td>84/204</td><td>1.66</td><td>8.45e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044260</td><td>cellular macromolecule metabolic process</td><td>64/204</td><td>1.78</td><td>5.37e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0019538</td><td>protein metabolic process</td><td>46/204</td><td>1.95</td><td>2.54e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0034645</td><td>cellular macromolecule biosynthetic process</td><td>39/204</td><td>1.77</td><td>1.36e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009059</td><td>macromolecule biosynthetic process</td><td>39/204</td><td>1.77</td><td>1.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0016070</td><td>RNA metabolic process</td><td>20/204</td><td>2.31</td><td>1.77e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044237</td><td>cellular metabolic process</td><td>69/204</td><td>1.43</td><td>3.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0044267</td><td>cellular protein metabolic process</td><td>36/204</td><td>1.73</td><td>3.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>27/204</td><td>1.76</td><td>1.46e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006139</td><td>nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>29/204</td><td>1.68</td><td>2.01e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0043412</td><td>macromolecule modification</td><td>21/204</td><td>1.82</td><td>2.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044249</td><td>cellular biosynthetic process</td><td>42/204</td><td>1.46</td><td>3.97e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006508</td><td>proteolysis</td><td>10/204</td><td>2.34</td><td>4.05e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0034641</td><td>cellular nitrogen compound metabolic process</td><td>31/204</td><td>1.56</td><td>4.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006807</td><td>nitrogen compound metabolic process</td><td>31/204</td><td>1.53</td><td>6.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009058</td><td>biosynthetic process</td><td>42/204</td><td>1.41</td><td>7.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0030529</td><td>ribonucleoprotein complex</td><td>48/204</td><td>13.49</td><td>3.46e-41</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0033279</td><td>ribosomal subunit</td><td>27/204</td><td>16.30</td><td>4.39e-26</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0005840</td><td>ribosome</td><td>31/204</td><td>11.86</td><td>2.74e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0015934</td><td>large ribosomal subunit</td><td>20/204</td><td>21.31</td><td>2.12e-22</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0043228</td><td>non-membrane-bounded organelle</td><td>39/204</td><td>6.42</td><td>2.03e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>4</td><td>GO:0043232</td><td>intracellular non-membrane-bounded organelle</td><td>39/204</td><td>6.42</td><td>2.03e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0022626</td><td>cytosolic ribosome</td><td>24/204</td><td>12.79</td><td>8.16e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>5</td><td>GO:0044445</td><td>cytosolic part</td><td>21/204</td><td>13.75</td><td>3.60e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005829</td><td>cytosol</td><td>22/204</td><td>5.21</td><td>5.40e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044446</td><td>intracellular organelle part</td><td>42/204</td><td>2.87</td><td>1.28e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044422</td><td>organelle part</td><td>42/204</td><td>2.87</td><td>1.32e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0005622</td><td>intracellular</td><td>86/204</td><td>1.58</td><td>5.05e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0044424</td><td>intracellular part</td><td>83/204</td><td>1.60</td><td>6.54e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>5</td><td>GO:0005730</td><td>nucleolus</td><td>10/204</td><td>5.72</td><td>1.70e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>4</td><td>GO:0070013</td><td>intracellular organelle lumen</td><td>12/204</td><td>4.34</td><td>4.89e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0043233</td><td>organelle lumen</td><td>12/204</td><td>4.33</td><td>5.01e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0031981</td><td>nuclear lumen</td><td>10/204</td><td>4.06</td><td>4.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0044444</td><td>cytoplasmic part</td><td>56/204</td><td>1.58</td><td>1.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0043229</td><td>intracellular organelle</td><td>68/204</td><td>1.44</td><td>3.07e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>116/204</td><td>1.24</td><td>5.57e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0044428</td><td>nuclear part</td><td>10/204</td><td>2.95</td><td>6.63e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005737</td><td>cytoplasm</td><td>56/204</td><td>1.47</td><td>8.24e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>14/204</td><td>2.14</td><td>2.49e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0003735</td><td>structural constituent of ribosome</td><td>31/204</td><td>14.04</td><td>1.40e-27</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>98/204</td><td>1.21</td><td>6.73e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosomal</td><td>-</td><td>33/204</td><td>10.72</td><td>2.31e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ribosome</td><td>-</td><td>31/204</td><td>11.51</td><td>6.95e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>constituent</td><td>-</td><td>31/204</td><td>10.84</td><td>4.38e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>structural</td><td>-</td><td>31/204</td><td>8.67</td><td>3.91e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>translation</td><td>-</td><td>33/204</td><td>6.53</td><td>1.48e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cytosolic</td><td>-</td><td>23/204</td><td>10.53</td><td>4.39e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>large</td><td>-</td><td>19/204</td><td>12.15</td><td>1.63e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>32/204</td><td>4.28</td><td>8.06e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>biogenesis</td><td>-</td><td>11/204</td><td>7.93</td><td>1.80e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>proteolysis</td><td>-</td><td>10/204</td><td>4.01</td><td>4.75e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>intracellular</td><td>-</td><td>14/204</td><td>2.66</td><td>2.90e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>peptidase</td><td>-</td><td>10/204</td><td>2.46</td><td>2.75e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G08260&keyword=peptidase">2.00E-120</a></td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>