with_AGI_gene
<html><body><title>OMAT5P115080</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501150800000i/OMAT5P115080.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501150800000i/OMAT5P115080.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501150800000i/OMAT5P115080.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501090800000i">OMAT5P109080</a></td><td>0.97765</td><td>-</td><td>AT5G38096,AT5G38100</td><td>[AT5G38096]Pseudogene of AT5G38100, [AT5G38100]methyltransferase-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200088500000i">OMAT2P008850</a></td><td>0.975317</td><td>-</td><td>AT2G35380</td><td>peroxidase 20 (PER20) (P20)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400080800000i">OMAT4P008080</a></td><td>0.975052</td><td>-</td><td>AT4G25820</td><td>XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100152800000i">OMAT1P015280</a></td><td>0.97476</td><td>-</td><td>AT1G54970</td><td>ATPRP1 (PROLINE-RICH PROTEIN 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301075000000i">OMAT3P107500</a></td><td>0.974672</td><td>-</td><td>AT3G22570</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400060100000i">OMAT4P006010</a></td><td>0.972949</td><td>-</td><td>AT4G19680</td><td>IRT2</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101141100000i">OMAT1P114110</a></td><td>0.972193</td><td>-</td><td>AT1G56550</td><td>UDP-xylosyltransferase</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300014400000i">OMAT3P001440</a></td><td>0.970942</td><td>-</td><td>AT3G04320</td><td>endopeptidase inhibitor</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500017900000i">OMAT5P001790</a></td><td>0.967887</td><td>-</td><td>AT5G05500</td><td>pollen Ole e 1 allergen and extensin family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301115600000i">OMAT3P111560</a></td><td>0.964312</td><td>-</td><td>AT3G49960</td><td>peroxidase, putative</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200114200000i">OMAT2P011420</a></td><td>-0.721594</td><td>-</td><td>AT2G42130</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100006500000i">OMAT1P000650</a></td><td>-0.620864</td><td>-</td><td>AT1G02560</td><td>CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300115350000i">OMAT3P011535</a></td><td>-0.591358</td><td>-</td><td>AT3G44620</td><td>protein tyrosine phosphatase</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300172800000i">OMAT3P017280</a></td><td>-0.58698</td><td>-</td><td>AT3G61080</td><td>fructosamine kinase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401048000000i">OMAT4P104800</a></td><td>-0.559735</td><td>-</td><td>AT4G18810</td><td>binding / catalytic/ transcription repressor</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200106200000i">OMAT2P010620</a></td><td>-0.552799</td><td>-</td><td>AT2G40020</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500161500000i">OMAT5P016150</a></td><td>-0.53995</td><td>-</td><td>AT5G54770</td><td>THI1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301133400000i">OMAT3P113340</a></td><td>-0.539895</td><td>-</td><td>AT3G55040</td><td>GSTL2</td><td>AT3G55030</td><td>PGPS2 (phosphatidylglycerolphosphate synthase 2)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300151700000i">OMAT3P015170</a></td><td>-0.539606</td><td>-</td><td>AT3G55250</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400013800000i">OMAT4P001380</a></td><td>-0.53589</td><td>-</td><td>AT4G04020</td><td>FIB (FIBRILLIN)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501150800000i/OMAT5P115080-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 2.62e-08</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>2.62e-08 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>35/200</td><td>2.82</td><td>7.32e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0006979</td><td>response to oxidative stress</td><td>12/200</td><td>7.34</td><td>1.25e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0042221</td><td>response to chemical stimulus</td><td>30/200</td><td>2.63</td><td>3.95e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>12/200</td><td>2.64</td><td>7.19e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>11/200</td><td>2.10</td><td>6.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>11/200</td><td>2.01</td><td>9.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>50/200</td><td>2.06</td><td>1.68e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0016021</td><td>integral to membrane</td><td>10/200</td><td>3.25</td><td>2.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>14/200</td><td>2.61</td><td>3.53e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005618</td><td>cell wall</td><td>10/200</td><td>3.01</td><td>5.55e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0030312</td><td>external encapsulating structure</td><td>10/200</td><td>2.99</td><td>5.89e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>111/200</td><td>1.21</td><td>2.24e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004601</td><td>peroxidase activity</td><td>11/200</td><td>17.59</td><td>1.71e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0016684</td><td>oxidoreductase activity, acting on peroxide as acceptor</td><td>11/200</td><td>17.59</td><td>1.71e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>15/200</td><td>8.57</td><td>3.13e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>15/200</td><td>7.87</td><td>1.11e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>28/200</td><td>3.32</td><td>6.86e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>29/200</td><td>2.02</td><td>1.02e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>29/200</td><td>2.02</td><td>1.02e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016757</td><td>transferase activity, transferring glycosyl groups</td><td>10/200</td><td>3.43</td><td>1.86e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>27/200</td><td>1.99</td><td>2.17e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016740</td><td>transferase activity</td><td>30/200</td><td>1.83</td><td>4.23e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016301</td><td>kinase activity</td><td>15/200</td><td>1.86</td><td>7.21e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>149/200</td><td>1.66</td><td>4.95e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0006036</td><td>root epidermis</td><td>12/200</td><td>19.19</td><td>6.88e-14</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>29/200</td><td>12.43</td><td>2.25e-24</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>visible</td><td>-</td><td>25/200</td><td>6.75</td><td>8.17e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>43/200</td><td>3.27</td><td>9.74e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>fungal</td><td>-</td><td>12/200</td><td>15.23</td><td>1.42e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>response</td><td>-</td><td>50/200</td><td>2.79</td><td>4.86e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>25/200</td><td>5.05</td><td>6.05e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>peroxidase</td><td>-</td><td>11/200</td><td>15.50</td><td>7.85e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>oxidative</td><td>-</td><td>12/200</td><td>8.53</td><td>2.05e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stress</td><td>-</td><td>21/200</td><td>4.48</td><td>2.33e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>electron</td><td>-</td><td>18/200</td><td>5.06</td><td>3.88e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>18/200</td><td>4.49</td><td>2.62e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>bacterial</td><td>-</td><td>11/200</td><td>7.29</td><td>4.59e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>system</td><td>-</td><td>51/200</td><td>2.10</td><td>5.96e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>50/200</td><td>2.11</td><td>7.08e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>37/200</td><td>2.45</td><td>1.17e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>34/200</td><td>2.33</td><td>1.19e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>34/200</td><td>2.31</td><td>1.41e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>putative</td><td>-</td><td>46/200</td><td>1.99</td><td>1.42e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G57540&keyword=putative">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>38/200</td><td>1.96</td><td>1.77e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>14/200</td><td>3.28</td><td>2.85e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>26/200</td><td>2.26</td><td>3.29e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>24/200</td><td>2.19</td><td>1.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>resistance</td><td>-</td><td>10/200</td><td>3.52</td><td>1.50e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>defense</td><td>-</td><td>11/200</td><td>3.15</td><td>2.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>integral</td><td>-</td><td>11/200</td><td>3.08</td><td>2.72e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>12/200</td><td>2.79</td><td>4.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>26/200</td><td>1.92</td><td>4.79e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>13/200</td><td>2.42</td><td>1.11e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>17/200</td><td>2.08</td><td>1.53e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>33/200</td><td>1.61</td><td>2.21e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>15/200</td><td>2.06</td><td>2.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>15/200</td><td>2.06</td><td>2.86e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G57540&keyword=hydrolase">2.00E-96</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>11/200</td><td>2.31</td><td>3.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferase</td><td>-</td><td>12/200</td><td>1.96</td><td>9.10e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G57540&keyword=transferase">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>18/200</td><td>1.71</td><td>9.82e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.68579400000000001469
OMAT5P115080