0.55150799999999999823
<html><body><title>AT1G09000.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u120900001000i/AT1G09000.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u120900001000i/AT1G09000.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u120900001000i/AT1G09000.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224746001000i">AT2G47460.1</a></td><td>0.956184</td><td>MYB12 (MYB DOMAIN PROTEIN 12)</td><td>OMAT2P013660</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325910001000i">AT3G59100.1</a></td><td>0.954837</td><td>ATGSL11 (glucan synthase-like 11)</td><td>OMAT3P016620</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221911001000i">AT2G19110.1</a></td><td>0.949069</td><td>HMA4</td><td>OMAT2P003150</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321019001000i">AT3G10190.1</a></td><td>0.946602</td><td>calmodulin, putative</td><td>OMAT3P003520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222966001000i">AT2G29660.1</a></td><td>0.926321</td><td>zinc finger (C2H2 type) family protein</td><td>OMAT2P006860</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525707001000i">AT5G57070.1</a></td><td>0.925708</td><td>hydroxyproline-rich glycoprotein family protein</td><td>OMAT5P017020</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522666001000i">AT5G26660.1</a></td><td>0.923406</td><td>ATMYB86 (MYB DOMAIN PROTEIN 86)</td><td>OMAT5P107920</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521085001000i">AT5G10850.1</a></td><td>0.919434</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422030002000i">AT4G20300.2</a></td><td>0.907999</td><td>unknown protein</td><td>OMAT4P006200</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520162001000i">AT5G01620.1</a></td><td>0.907897</td><td>unknown protein</td><td>OMAT5P000220</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124997001000i">AT1G49970.1</a></td><td>-0.751804</td><td>CLPR1</td><td>OMAT1P112180</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122106501000i">AT1G21065.1</a></td><td>-0.748171</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523608001000i">AT5G36080.1</a></td><td>-0.742962</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220627001000i">AT2G06270.1</a></td><td>-0.723321</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126251001000i">AT1G62510.1</a></td><td>-0.719984</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>OMAT1P115300</td><td>-</td><td>OMAT1P017040</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121175001000i">AT1G11750.1</a></td><td>-0.717774</td><td>CLPP6</td><td>OMAT1P004020</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122738504000i">AT1G27385.4</a></td><td>-0.717496</td><td>unknown protein</td><td>OMAT1P108570</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522304001000i">AT5G23040.1</a></td><td>-0.704634</td><td>CDF1 (CELL GROWTH DEFECT FACTOR 1)</td><td>OMAT5P106710</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421086001000i">AT4G10860.1</a></td><td>-0.703186</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522876001000i">AT5G28760.1</a></td><td>-0.700462</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u120900001000i/AT1G09000.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 3.99e-08</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>3.99e-08 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>20/200</td><td>1.95</td><td>1.51e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>20/200</td><td>1.95</td><td>1.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0016020</td><td>membrane</td><td>47/200</td><td>1.72</td><td>6.00e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>40/200</td><td>1.65</td><td>5.20e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>113/200</td><td>1.23</td><td>8.86e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0005886</td><td>plasma membrane</td><td>21/200</td><td>1.70</td><td>6.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>155/200</td><td>1.72</td><td>1.18e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>147/200</td><td>1.40</td><td>2.43e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>146/200</td><td>1.40</td><td>3.67e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>130/200</td><td>1.47</td><td>8.61e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>138/200</td><td>1.43</td><td>9.68e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>149/200</td><td>1.37</td><td>1.08e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>139/200</td><td>1.41</td><td>1.72e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>139/200</td><td>1.41</td><td>1.72e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>138/200</td><td>1.41</td><td>2.72e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>133/200</td><td>1.41</td><td>1.08e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>133/200</td><td>1.41</td><td>1.08e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>140/200</td><td>1.37</td><td>2.28e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>115/200</td><td>1.48</td><td>3.07e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>116/200</td><td>1.44</td><td>1.20e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>128/200</td><td>1.39</td><td>1.32e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>122/200</td><td>1.39</td><td>3.50e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>120/200</td><td>1.30</td><td>2.47e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G09000&keyword=leaf">4.19E-17</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>108/200</td><td>1.29</td><td>2.33e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>114/200</td><td>1.27</td><td>2.50e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>104/200</td><td>1.28</td><td>4.54e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>105/200</td><td>1.27</td><td>4.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>108/200</td><td>1.26</td><td>6.92e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>104/200</td><td>1.25</td><td>1.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>149/200</td><td>1.42</td><td>3.59e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>145/200</td><td>1.42</td><td>1.42e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>141/200</td><td>1.43</td><td>3.83e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>134/200</td><td>1.38</td><td>3.99e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>119/200</td><td>1.32</td><td>1.42e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>119/200</td><td>1.32</td><td>1.81e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>109/200</td><td>1.33</td><td>4.44e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>103/200</td><td>1.25</td><td>1.26e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>101/200</td><td>1.22</td><td>4.09e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>97/200</td><td>1.22</td><td>4.94e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>40/200</td><td>2.65</td><td>3.89e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>39/200</td><td>2.67</td><td>4.62e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>39/200</td><td>2.65</td><td>5.69e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>44/200</td><td>2.27</td><td>6.19e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>31/200</td><td>2.36</td><td>2.69e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>47/200</td><td>1.77</td><td>2.90e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>globular</td><td>-</td><td>12/200</td><td>3.20</td><td>1.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>40/200</td><td>1.65</td><td>4.92e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G09000&keyword=system">2.91E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>39/200</td><td>1.65</td><td>5.86e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>69/200</td><td>1.37</td><td>1.32e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>function</td><td>-</td><td>27/200</td><td>1.73</td><td>1.85e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G09000&keyword=function">2.46E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>78/200</td><td>1.30</td><td>2.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>18/200</td><td>1.85</td><td>4.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>14/200</td><td>1.96</td><td>5.70e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>14/200</td><td>1.92</td><td>6.85e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>22/200</td><td>1.64</td><td>8.03e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G09000&keyword=dependent">5.00E-27</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>10/200</td><td>2.10</td><td>8.73e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>18/200</td><td>1.71</td><td>9.82e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G09000&keyword=kinase">0</a></td><td>yes</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
without_OMAT_gene
AT1G09000.1