0.71115200000000000635
AT1G11840.1
with_OMAT_gene
<html><body><title>AT1G11840.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121184001000i/AT1G11840.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121184001000i/AT1G11840.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121184001000i/AT1G11840.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525480001000i">AT5G54800.1</a></td><td>0.92392</td><td>GPT1</td><td>OMAT5P016160</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520228001000i">AT5G02280.1</a></td><td>0.890888</td><td>synbindin, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320908001000i">AT3G09080.1</a></td><td>0.890293</td><td>transducin family protein / WD-40 repeat family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221544001000i">AT2G15440.1</a></td><td>0.889097</td><td>unknown protein</td><td>OMAT2P101790</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122982001000i">AT1G29820.1</a></td><td>0.883391</td><td>unknown protein</td><td>OMAT1P010450</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322162001000i">AT3G21620.1</a></td><td>0.882249</td><td>early-responsive to dehydration protein-related / ERD protein-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320466001000i">AT3G04660.1</a></td><td>0.871849</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323084101000i">AT3G30841.1</a></td><td>0.85968</td><td>2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related</td><td>OMAT3P011170</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521773001000i">AT5G17730.1</a></td><td>0.858986</td><td>AAA-type ATPase family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321282001000i">AT3G12820.1</a></td><td>0.857307</td><td>AtMYB10 (myb domain protein 10)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223539002000i">AT2G35390.2</a></td><td>-0.876974</td><td>ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)</td><td>OMAT2P107940</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420180001000i">AT4G01800.1</a></td><td>-0.870111</td><td>preprotein translocase secA subunit, putative</td><td>OMAT4P100650</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322690001000i">AT3G26900.1</a></td><td>-0.845553</td><td>shikimate kinase family protein</td><td>OMAT3P108800</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320535001000i">AT3G05350.1</a></td><td>-0.845527</td><td>aminopeptidase/ hydrolase</td><td>OMAT3P101750,OMAT3P101760</td><td>[OMAT3P101750]-, [OMAT3P101760]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220538001000i">AT2G05380.1</a></td><td>-0.833807</td><td>GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)</td><td>OMAT2P001215,OMAT2P001210</td><td>[OMAT2P001215]-, [OMAT2P001210]-</td><td>OMAT2P101090</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223995001000i">AT2G39950.1</a></td><td>-0.833262</td><td>unknown protein</td><td>OMAT2P109840</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120641001000i">AT1G06410.1</a></td><td>-0.827796</td><td>ATTPS7</td><td>OMAT1P002050</td><td>-</td><td>OMAT1P101820</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525092001000i">AT5G50920.1</a></td><td>-0.824363</td><td>CLPC1</td><td>OMAT5P113140</td><td>-</td><td>OMAT5P014560</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421704001000i">AT4G17040.1</a></td><td>-0.819482</td><td>ATP-dependent Clp protease proteolytic subunit, putative</td><td>OMAT4P104180</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221314601000i">AT2G13146.1</a></td><td>-0.806046</td><td>Pseudogene of AT2G12905</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u121184001000i/AT1G11840.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>40/200</td><td>1.65</td><td>5.20e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>38/200</td><td>1.61</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>38/200</td><td>1.57</td><td>1.77e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>76/200</td><td>1.27</td><td>5.51e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>