<html><body><title>AT1G32940.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123294001000i/AT1G32940.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123294001000i/AT1G32940.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123294001000i/AT1G32940.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325144001000i">AT3G51440.1</a></td><td>0.933908</td><td>strictosidine synthase family protein</td><td>OMAT3P013780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524069001000i">AT5G40690.1</a></td><td>0.930057</td><td>INVOLVED IN: biological_process unknown</td><td>OMAT5P011115</td><td>-</td><td>OMAT5P109645</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127789001000i">AT1G77890.1</a></td><td>0.928607</td><td>unknown protein</td><td>OMAT1P022990</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126862001000i">AT1G68620.1</a></td><td>0.907529</td><td>hydrolase</td><td>OMAT1P019410</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320406001000i">AT3G04060.1</a></td><td>0.907441</td><td>anac046 (Arabidopsis NAC domain containing protein 46)</td><td>OMAT3P101220</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126339001000i">AT1G63390.1</a></td><td>0.898561</td><td>flavin-containing monooxygenase-related / FMO-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120892002000i">AT1G08920.2</a></td><td>0.885758</td><td>sugar transporter, putative</td><td>OMAT1P003010</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126845001000i">AT1G68450.1</a></td><td>0.885296</td><td>VQ motif-containing protein</td><td>OMAT1P117070</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224351001000i">AT2G43510.1</a></td><td>0.88472</td><td>ATTI1</td><td>OMAT2P011940</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127212001000i">AT1G72120.1</a></td><td>0.873387</td><td>transporter</td><td>OMAT1P020760</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323230001000i">AT3G32300.1</a></td><td>-0.720516</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321541001000i">AT3G15410.1</a></td><td>-0.713686</td><td>leucine-rich repeat family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521766001000i">AT5G17660.1</a></td><td>-0.710117</td><td>tRNA (guanine-N7-)-methyltransferase</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321553001000i">AT3G15530.1</a></td><td>-0.706618</td><td>methyltransferase</td><td>OMAT3P105230</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223410001000i">AT2G34100.1</a></td><td>-0.699919</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524324001000i">AT5G43240.1</a></td><td>-0.699894</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420431501000i">AT4G04315.1</a></td><td>-0.686761</td><td>other RNA</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325178001000i">AT3G51780.1</a></td><td>-0.67551</td><td>ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123116001000i">AT1G31160.1</a></td><td>-0.674847</td><td>zinc-binding protein, putative / protein kinase C inhibitor, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322270001000i">AT3G22700.1</a></td><td>-0.674634</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u123294001000i/AT1G32940.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0044248</td><td>cellular catabolic process</td><td>14/200</td><td>3.88</td><td>4.01e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>14/200</td><td>2.94</td><td>1.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>12/200</td><td>2.30</td><td>2.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>14/200</td><td>2.11</td><td>2.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>14/200</td><td>2.11</td><td>2.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0010033</td><td>response to organic substance</td><td>13/200</td><td>1.94</td><td>7.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>36/200</td><td>1.48</td><td>5.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>17/200</td><td>2.02</td><td>2.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>135/200</td><td>1.61</td><td>7.76e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>134/200</td><td>1.59</td><td>3.91e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>139/200</td><td>1.54</td><td>6.95e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>129/200</td><td>1.56</td><td>1.48e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>143/200</td><td>1.37</td><td>5.73e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>123/200</td><td>1.46</td><td>8.65e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>143/200</td><td>1.37</td><td>9.53e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>140/200</td><td>1.37</td><td>2.28e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>130/200</td><td>1.41</td><td>2.71e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>145/200</td><td>1.34</td><td>3.79e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>48/200</td><td>1.65</td><td>1.38e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>109/200</td><td>1.21</td><td>2.78e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>47/200</td><td>1.45</td><td>2.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>47/200</td><td>1.45</td><td>2.84e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>115/200</td><td>1.19</td><td>3.68e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>116/200</td><td>1.19</td><td>4.01e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT1G32940&keyword=seed">5.00E-128</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>116/200</td><td>1.18</td><td>4.96e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>116/200</td><td>1.18</td><td>4.96e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>141/200</td><td>1.45</td><td>7.91e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>145/200</td><td>1.38</td><td>1.71e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>45/200</td><td>1.54</td><td>1.05e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>121/200</td><td>1.19</td><td>2.61e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>117/200</td><td>1.19</td><td>3.82e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>57/200</td><td>4.34</td><td>1.55e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stamen</td><td>-</td><td>13/200</td><td>9.52</td><td>1.23e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>senescence</td><td>-</td><td>10/200</td><td>8.23</td><td>4.51e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>visible</td><td>-</td><td>16/200</td><td>4.32</td><td>2.28e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>18/200</td><td>3.64</td><td>6.59e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>35/200</td><td>2.31</td><td>9.73e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>34/200</td><td>2.33</td><td>1.19e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>34/200</td><td>2.31</td><td>1.41e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>40/200</td><td>2.07</td><td>3.01e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>induced</td><td>-</td><td>11/200</td><td>4.02</td><td>2.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphate</td><td>-</td><td>11/200</td><td>3.63</td><td>6.03e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carbohydrate</td><td>-</td><td>12/200</td><td>3.06</td><td>1.75e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>responsive</td><td>-</td><td>10/200</td><td>3.34</td><td>2.34e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>globular</td><td>-</td><td>11/200</td><td>2.93</td><td>4.30e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>36/200</td><td>1.52</td><td>3.79e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>10/200</td><td>2.32</td><td>4.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>36/200</td><td>1.49</td><td>5.67e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>20/200</td><td>1.74</td><td>5.69e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>amino</td><td>-</td><td>16/200</td><td>1.86</td><td>6.09e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>28/200</td><td>1.56</td><td>6.81e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>11/200</td><td>2.09</td><td>7.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>process</td><td>-</td><td>31/200</td><td>1.51</td><td>7.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>15/200</td><td>1.83</td><td>8.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>12/200</td><td>1.95</td><td>9.24e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT1G32940.1
0.77035699999999995846
with_OMAT_gene