AT1G59670.1
with_OMAT_gene
<html><body><title>AT1G59670.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125967001000i/AT1G59670.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125967001000i/AT1G59670.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125967001000i/AT1G59670.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325724001000i">AT3G57240.1</a></td><td>0.99822</td><td>BG3 (BETA-1,3-GLUCANASE 3)</td><td>OMAT3P114090</td><td>-</td><td>OMAT3P016020</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322406801000i">AT3G24068.1</a></td><td>0.997099</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT3P107950</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423210001000i">AT4G32100.1</a></td><td>0.996522</td><td>galactosyltransferase</td><td>OMAT4P109110</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220319001000i">AT2G03190.1</a></td><td>0.996263</td><td>ASK16 (ARABIDOPSIS SKP1-LIKE 16)</td><td>OMAT2P000670</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124366501000i">AT1G43665.1</a></td><td>0.996239</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>OMAT1P111120</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223237001000i">AT2G32370.1</a></td><td>0.995958</td><td>HDG3 (HOMEODOMAIN GLABROUS 3)</td><td>OMAT2P007860</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521970001000i">AT5G19700.1</a></td><td>0.995908</td><td>MATE efflux protein-related</td><td>OMAT5P105780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124819501000i">AT1G48195.1</a></td><td>0.995736</td><td>zinc finger (CCCH-type) family protein</td><td>OMAT1P013190</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522541001000i">AT5G25410.1</a></td><td>0.995389</td><td>unknown protein</td><td>OMAT5P008730</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526323001000i">AT5G63230.1</a></td><td>0.995277</td><td>glycosyl hydrolase family protein 17</td><td>OMAT5P117100</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120102001000i">AT1G01020.1</a></td><td>-0.684624</td><td>ARV1</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321327001000i">AT3G13270.1</a></td><td>-0.659454</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520121501000i">AT5G01215.1</a></td><td>-0.633951</td><td>other RNA</td><td>-</td><td>-</td><td>OMAT5P000060</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522304001000i">AT5G23040.1</a></td><td>-0.591463</td><td>CDF1 (CELL GROWTH DEFECT FACTOR 1)</td><td>OMAT5P106710</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221620001000i">AT2G16200.1</a></td><td>-0.580211</td><td>protein binding / structural molecule</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221202501000i">AT2G12025.1</a></td><td>-0.576405</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221366001000i">AT2G13660.1</a></td><td>-0.576346</td><td>unknown protein</td><td>-</td><td>-</td><td>OMAT2P001670</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125338001000i">AT1G53380.1</a></td><td>-0.567502</td><td>unknown protein</td><td>OMAT1P113140</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222705001000i">AT2G27050.1</a></td><td>-0.567469</td><td>EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)</td><td>OMAT2P005910</td><td>-</td><td>OMAT2P105220</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127078001000i">AT1G70780.1</a></td><td>-0.564686</td><td>unknown protein</td><td>OMAT1P117920</td><td>-</td><td>OMAT1P020200</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125967001000i/AT1G59670.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 3.27e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>3.27e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>111/200</td><td>4.57</td><td>2.67e-50</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>138/200</td><td>1.51</td><td>8.64e-12</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004857</td><td>enzyme inhibitor activity</td><td>11/200</td><td>10.51</td><td>7.49e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>12/200</td><td>5.99</td><td>1.33e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>14/200</td><td>2.36</td><td>1.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>110/200</td><td>4.65</td><td>1.60e-50</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>110/200</td><td>4.54</td><td>1.90e-49</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defensin</td><td>-</td><td>28/200</td><td>21.55</td><td>1.47e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>secreted</td><td>-</td><td>14/200</td><td>20.78</td><td>2.70e-16</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>69/200</td><td>2.70</td><td>5.47e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>weight</td><td>-</td><td>12/200</td><td>17.82</td><td>1.83e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cysteine</td><td>-</td><td>17/200</td><td>7.72</td><td>1.12e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr006501</td><td>-</td><td>11/200</td><td>14.87</td><td>1.29e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>12/200</td><td>12.79</td><td>1.33e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>15/200</td><td>6.24</td><td>3.22e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>small</td><td>-</td><td>19/200</td><td>4.72</td><td>5.05e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>16/200</td><td>5.35</td><td>1.05e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular</td><td>-</td><td>13/200</td><td>6.14</td><td>3.43e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectin</td><td>-</td><td>11/200</td><td>7.26</td><td>4.79e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>17/200</td><td>4.53</td><td>5.13e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>16/200</td><td>4.21</td><td>3.27e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>15/200</td><td>4.45</td><td>3.39e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>modification</td><td>-</td><td>10/200</td><td>5.88</td><td>1.31e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>13/200</td><td>3.05</td><td>1.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>22/200</td><td>2.01</td><td>6.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>19/200</td><td>2.13</td><td>6.70e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>30/200</td><td>1.55</td><td>5.92e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.65840600000000004677