0.0 <html><body><title>AT2G02440.1</title>(&uarr; Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220244001000i/AT2G02440.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220244001000i/AT2G02440.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220244001000i/AT2G02440.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222440001000i">AT2G24400.1</a></td><td>0.822991</td><td>auxin-responsive protein, putative / small auxin up RNA (SAUR_D)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220337001000i">AT2G03370.1</a></td><td>0.80277</td><td>transferase, transferring glycosyl groups</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222469601000i">AT2G24696.1</a></td><td>0.79963</td><td>DNA binding</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422775001000i">AT4G27750.1</a></td><td>0.798764</td><td>ISI1 (IMPAIRED SUCROSE INDUCTION 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420527001000i">AT4G05270.1</a></td><td>0.781242</td><td>ubiquitin family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223613001000i">AT2G36130.1</a></td><td>0.77882</td><td>peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative</td><td>OMAT2P009190</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220575201000i">AT2G05752.1</a></td><td>0.775379</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220434001000i">AT2G04340.1</a></td><td>0.77021</td><td>unknown protein</td><td>OMAT2P000980</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526118001000i">AT5G61180.1</a></td><td>0.766842</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322097001000i">AT3G20970.1</a></td><td>0.758004</td><td>NFU4</td><td>OMAT3P008010</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522607001000i">AT5G26070.1</a></td><td>-0.785019</td><td>hydroxyproline-rich glycoprotein family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422973502000i">AT4G29735.2</a></td><td>-0.714783</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222871001000i">AT2G28710.1</a></td><td>-0.702021</td><td>zinc finger (C2H2 type) family protein</td><td>OMAT2P006520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324247201000i">AT3G42472.1</a></td><td>-0.699607</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124023001000i">AT1G40230.1</a></td><td>-0.696588</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125988501000i">AT1G59885.1</a></td><td>-0.694274</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125140201000i">AT1G51402.1</a></td><td>-0.691433</td><td>unknown protein</td><td>OMAT1P014180</td><td>-</td><td>OMAT1P112450</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320345601000i">AT3G03456.1</a></td><td>-0.690784</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222489001000i">AT2G24890.1</a></td><td>-0.689001</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520143001000i">AT5G01430.1</a></td><td>-0.686276</td><td>Got1-like family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220244001000i/AT2G02440.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0043234</td><td>protein complex</td><td>15/200</td><td>2.29</td><td>9.53e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>14/200</td><td>2.19</td><td>2.06e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>96/200</td><td>1.31</td><td>4.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>97/200</td><td>1.26</td><td>1.76e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>101/200</td><td>1.24</td><td>1.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>97/200</td><td>1.25</td><td>2.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>103/200</td><td>1.22</td><td>3.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>98/200</td><td>1.22</td><td>4.59e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>93/200</td><td>1.22</td><td>5.97e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>99/200</td><td>1.20</td><td>7.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>102/200</td><td>1.19</td><td>9.49e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>101/200</td><td>1.27</td><td>8.18e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>103/200</td><td>1.25</td><td>1.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>102/200</td><td>1.24</td><td>1.72e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>102/200</td><td>1.23</td><td>2.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>95/200</td><td>1.24</td><td>3.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>95/200</td><td>1.23</td><td>3.72e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>101/200</td><td>1.20</td><td>6.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>101/200</td><td>1.20</td><td>6.58e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>101/200</td><td>1.19</td><td>8.29e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>106/200</td><td>1.18</td><td>9.71e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>75/200</td><td>1.54</td><td>1.21e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>83/200</td><td>1.39</td><td>1.76e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>70/200</td><td>1.39</td><td>7.87e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>subunit</td><td>-</td><td>15/200</td><td>2.05</td><td>3.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>12/200</td><td>2.19</td><td>3.68e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>complex</td><td>-</td><td>16/200</td><td>1.89</td><td>5.17e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>10/200</td><td>2.14</td><td>7.70e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html> AT2G02440.1 without_OMAT_gene