AT2G26000.2
without_OMAT_gene
0.67671899999999995945
<html><body><title>AT2G26000.2</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222600002000i/AT2G26000.2.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222600002000i/AT2G26000.2.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222600002000i/AT2G26000.2.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521663001000i">AT5G16630.1</a></td><td>0.96657</td><td>RAD4</td><td>OMAT5P005820</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524531001000i">AT5G45310.1</a></td><td>0.961933</td><td>unknown protein</td><td>OMAT5P111210</td><td>-</td><td>OMAT5P012660</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120303001000i">AT1G03030.1</a></td><td>0.955148</td><td>phosphoribulokinase/uridine kinase family protein</td><td>OMAT1P000810</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321258001000i">AT3G12580.1</a></td><td>0.952491</td><td>HSP70 (heat shock protein 70)</td><td>OMAT3P104110</td><td>-</td><td>OMAT3P004400</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421939001000i">AT4G19390.1</a></td><td>0.952197</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT4P104950</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520939001000i">AT5G09390.1</a></td><td>0.949793</td><td>CD2-binding protein-related</td><td>OMAT5P003130</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320120001000i">AT3G01200.1</a></td><td>0.948901</td><td>AtRP2 (PPDK regulatory protein 2)</td><td>OMAT3P100100</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522199001000i">AT5G21990.1</a></td><td>0.946892</td><td>tetratricopeptide repeat (TPR)-containing protein</td><td>OMAT5P007450</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123310201000i">AT1G33102.1</a></td><td>0.945141</td><td>unknown protein</td><td>OMAT1P110430</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127700001000i">AT1G77000.1</a></td><td>0.944494</td><td>SKP2B</td><td>OMAT1P022690</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222796001000i">AT2G27960.1</a></td><td>-0.90118</td><td>CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)</td><td>OMAT2P105540</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423472001000i">AT4G34720.1</a></td><td>-0.898165</td><td>AVA-P1</td><td>OMAT4P110151</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321150001000i">AT3G11500.1</a></td><td>-0.847336</td><td>small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative</td><td>OMAT3P103770</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325293001000i">AT3G52930.1</a></td><td>-0.844155</td><td>fructose-bisphosphate aldolase, putative</td><td>OMAT3P112520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123427001000i">AT1G34270.1</a></td><td>-0.837061</td><td>exostosin family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423199003000i">AT4G31990.3</a></td><td>-0.830623</td><td>ASP5 (ASPARTATE AMINOTRANSFERASE 5)</td><td>OMAT4P109075</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222093001000i">AT2G20930.1</a></td><td>-0.817351</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521171001000i">AT5G11710.1</a></td><td>-0.815637</td><td>epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related</td><td>OMAT5P004000</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127049001000i">AT1G70490.1</a></td><td>-0.810402</td><td>ARFA1D</td><td>OMAT1P117850</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224250001000i">AT2G42500.1</a></td><td>-0.806254</td><td>PP2A-4</td><td>OMAT2P110810</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u222600002000i/AT2G26000.2-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009408</td><td>response to heat</td><td>12/200</td><td>15.12</td><td>1.57e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009266</td><td>response to temperature stimulus</td><td>13/200</td><td>5.70</td><td>8.55e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>13/200</td><td>4.77</td><td>7.34e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>13/200</td><td>4.55</td><td>1.28e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009793</td><td>embryonic development ending in seed dormancy</td><td>10/200</td><td>4.36</td><td>2.18e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009790</td><td>embryonic development</td><td>10/200</td><td>3.79</td><td>7.81e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>16/200</td><td>2.70</td><td>1.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>14/200</td><td>2.87</td><td>1.28e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>14/200</td><td>2.54</td><td>4.65e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009628</td><td>response to abiotic stimulus</td><td>17/200</td><td>2.29</td><td>4.97e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0022414</td><td>reproductive process</td><td>14/200</td><td>2.32</td><td>1.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>12/200</td><td>2.30</td><td>2.45e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>12/200</td><td>2.19</td><td>3.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003700</td><td>transcription factor activity</td><td>18/200</td><td>1.78</td><td>6.28e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>64/200</td><td>1.97</td><td>9.97e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>64/200</td><td>1.97</td><td>9.97e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>52/200</td><td>1.78</td><td>7.40e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>128/200</td><td>1.25</td><td>1.04e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>109/200</td><td>1.30</td><td>1.28e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>133/200</td><td>1.22</td><td>1.65e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>114/200</td><td>1.27</td><td>2.50e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>108/200</td><td>1.28</td><td>2.89e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>106/200</td><td>1.28</td><td>3.83e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>127/200</td><td>1.21</td><td>5.46e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>104/200</td><td>1.24</td><td>1.69e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>124/200</td><td>1.19</td><td>1.75e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>116/200</td><td>1.19</td><td>4.01e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>112/200</td><td>1.19</td><td>4.89e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>112/200</td><td>1.19</td><td>4.89e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>116/200</td><td>1.18</td><td>4.96e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>116/200</td><td>1.18</td><td>4.96e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>106/200</td><td>1.18</td><td>9.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>52/200</td><td>1.78</td><td>8.59e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>120/200</td><td>1.24</td><td>4.11e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>125/200</td><td>1.19</td><td>1.51e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>118/200</td><td>1.20</td><td>2.47e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>121/200</td><td>1.19</td><td>2.61e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>109/200</td><td>1.21</td><td>3.39e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>103/200</td><td>1.22</td><td>3.68e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>102/200</td><td>1.21</td><td>4.34e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>102/200</td><td>1.21</td><td>4.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>shock</td><td>-</td><td>14/200</td><td>7.46</td><td>8.46e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>dormancy</td><td>-</td><td>11/200</td><td>5.81</td><td>5.30e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ending</td><td>-</td><td>10/200</td><td>5.62</td><td>2.02e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>visible</td><td>-</td><td>14/200</td><td>3.78</td><td>5.50e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>16/200</td><td>3.23</td><td>1.12e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryonic</td><td>-</td><td>10/200</td><td>4.66</td><td>1.19e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>74/200</td><td>1.52</td><td>2.35e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>26/200</td><td>1.98</td><td>3.02e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>26/200</td><td>1.94</td><td>4.06e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>16/200</td><td>2.29</td><td>6.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>containing</td><td>-</td><td>29/200</td><td>1.74</td><td>1.22e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G26000&keyword=containing">2.00E-113</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>25/200</td><td>1.65</td><td>4.79e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>20/200</td><td>1.74</td><td>5.69e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>30/200</td><td>1.55</td><td>5.92e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>24/200</td><td>1.64</td><td>5.92e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>24/200</td><td>1.63</td><td>6.49e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>65/200</td><td>1.29</td><td>8.36e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>