AT3G53480.1
with_OMAT_gene
<html><body><title>AT3G53480.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325348001000i/AT3G53480.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325348001000i/AT3G53480.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325348001000i/AT3G53480.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422359001000i">AT4G23590.1</a></td><td>0.97225</td><td>aminotransferase class I and II family protein</td><td>OMAT4P007170</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321524002000i">AT3G15240.2</a></td><td>0.967036</td><td>unknown protein</td><td>OMAT3P005520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220468001000i">AT2G04680.1</a></td><td>0.964384</td><td>DC1 domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121521001000i">AT1G15210.1</a></td><td>0.962212</td><td>PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)</td><td>OMAT1P105050</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322037001000i">AT3G20370.1</a></td><td>0.962208</td><td>meprin and TRAF homology domain-containing protein / MATH domain-containing protein</td><td>OMAT3P007780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422160001000i">AT4G21600.1</a></td><td>0.960058</td><td>ENDO5 (endonuclease 5)</td><td>OMAT4P006605</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222363001000i">AT2G23630.1</a></td><td>0.959853</td><td>sks16 (SKU5 Similar 16)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u326276001000i">AT3G62760.1</a></td><td>0.958241</td><td>ATGSTF13</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126627001000i">AT1G66270.1</a></td><td>0.957595</td><td>BGLU21</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221482001000i">AT2G14820.1</a></td><td>0.95742</td><td>NPY2 (NAKED PINS IN YUC MUTANTS 2)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525477001000i">AT5G54770.1</a></td><td>-0.737237</td><td>THI1</td><td>OMAT5P016150</td><td>-</td><td>OMAT5P114270</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523259801000i">AT5G32598.1</a></td><td>-0.691286</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221033001000i">AT2G10330.1</a></td><td>-0.689627</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526056001000i">AT5G60560.1</a></td><td>-0.682861</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521752001000i">AT5G17520.1</a></td><td>-0.67195</td><td>RCP1 (ROOT CAP 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123031001000i">AT1G30310.1</a></td><td>-0.624094</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324462001000i">AT3G44620.1</a></td><td>-0.618214</td><td>protein tyrosine phosphatase</td><td>OMAT3P011535</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423822503000i">AT4G38225.3</a></td><td>-0.61553</td><td>unknown protein</td><td>OMAT4P013310</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121459001000i">AT1G14590.1</a></td><td>-0.613776</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127306001000i">AT1G73060.1</a></td><td>-0.599197</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325348001000i/AT3G53480.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.02e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.02e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>14/200</td><td>6.05</td><td>1.44e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006519</td><td>cellular amino acid and derivative metabolic process</td><td>10/200</td><td>2.88</td><td>8.08e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006796</td><td>phosphate metabolic process</td><td>14/200</td><td>2.11</td><td>2.92e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006793</td><td>phosphorus metabolic process</td><td>14/200</td><td>2.11</td><td>2.95e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>10/200</td><td>2.20</td><td>6.39e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>16/200</td><td>1.78</td><td>9.08e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>64/200</td><td>2.63</td><td>3.11e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>120/200</td><td>1.31</td><td>1.86e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>12/200</td><td>2.24</td><td>3.06e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=intrinsic%20membrane">2.78E-17</a></td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>13/200</td><td>7.43</td><td>3.11e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>13/200</td><td>6.82</td><td>9.25e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0019825</td><td>oxygen binding</td><td>11/200</td><td>7.92</td><td>1.84e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>36/200</td><td>2.65</td><td>2.27e-08</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=metal%20binding">4.28E-17</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>36/200</td><td>2.51</td><td>9.70e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>36/200</td><td>2.51</td><td>9.70e-08</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=binding">0</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>26/200</td><td>3.08</td><td>1.02e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0004497</td><td>monooxygenase activity</td><td>11/200</td><td>6.16</td><td>2.83e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016740</td><td>transferase activity</td><td>32/200</td><td>1.96</td><td>8.45e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016301</td><td>kinase activity</td><td>18/200</td><td>2.24</td><td>4.90e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016772</td><td>transferase activity, transferring phosphorus-containing groups</td><td>18/200</td><td>1.96</td><td>2.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0016773</td><td>phosphotransferase activity, alcohol group as acceptor</td><td>13/200</td><td>2.09</td><td>4.05e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0030554</td><td>adenyl nucleotide binding</td><td>16/200</td><td>1.77</td><td>9.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0001883</td><td>purine nucleoside binding</td><td>16/200</td><td>1.77</td><td>9.66e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0001882</td><td>nucleoside binding</td><td>16/200</td><td>1.76</td><td>9.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>162/200</td><td>1.80</td><td>1.85e-26</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=root">1.43E-16</a></td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>38/200</td><td>16.28</td><td>5.61e-36</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>64/200</td><td>2.71</td><td>8.48e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>64/200</td><td>2.64</td><td>2.73e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017973</td><td>-</td><td>12/200</td><td>8.79</td><td>1.42e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr017972</td><td>-</td><td>12/200</td><td>8.79</td><td>1.42e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>class</td><td>-</td><td>24/200</td><td>4.01</td><td>1.88e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>monooxygenase</td><td>-</td><td>13/200</td><td>7.61</td><td>2.28e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr001128</td><td>-</td><td>12/200</td><td>7.95</td><td>4.79e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>oxygen</td><td>-</td><td>14/200</td><td>6.08</td><td>1.35e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>electron</td><td>-</td><td>17/200</td><td>4.77</td><td>2.32e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>17/200</td><td>4.24</td><td>1.38e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>cytochrome</td><td>-</td><td>13/200</td><td>5.32</td><td>1.98e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>30/200</td><td>2.61</td><td>4.62e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>putative</td><td>-</td><td>47/200</td><td>2.04</td><td>5.78e-07</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=putative">0</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>tyrosine</td><td>-</td><td>15/200</td><td>4.23</td><td>6.60e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>process</td><td>-</td><td>43/200</td><td>2.10</td><td>8.13e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>ipr001611</td><td>-</td><td>13/200</td><td>4.60</td><td>1.13e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>oxidase</td><td>-</td><td>12/200</td><td>4.37</td><td>4.55e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>active</td><td>-</td><td>22/200</td><td>2.69</td><td>8.48e-06</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=active">1.35E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>bilateral</td><td>-</td><td>12/200</td><td>3.29</td><td>8.68e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>signaling</td><td>-</td><td>12/200</td><td>3.22</td><td>1.05e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>15/200</td><td>2.79</td><td>1.12e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=group">3.04E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017441</td><td>-</td><td>13/200</td><td>3.03</td><td>1.18e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr008271</td><td>-</td><td>14/200</td><td>2.87</td><td>1.29e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>18/200</td><td>2.48</td><td>1.36e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=transmembrane">0</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>13/200</td><td>2.96</td><td>1.48e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>23/200</td><td>2.18</td><td>1.54e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr000719</td><td>-</td><td>16/200</td><td>2.57</td><td>1.90e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leucine</td><td>-</td><td>14/200</td><td>2.67</td><td>2.81e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr017442</td><td>-</td><td>14/200</td><td>2.66</td><td>2.92e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr011009</td><td>-</td><td>16/200</td><td>2.47</td><td>2.92e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>13/200</td><td>2.73</td><td>3.34e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=receptor">2.27E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>17/200</td><td>2.33</td><td>4.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>phosphorylation</td><td>-</td><td>15/200</td><td>2.44</td><td>4.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>defense</td><td>-</td><td>10/200</td><td>2.87</td><td>8.31e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>25/200</td><td>1.85</td><td>1.06e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=conserved">3.05E-16</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>11/200</td><td>2.58</td><td>1.30e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>serine</td><td>-</td><td>18/200</td><td>2.02</td><td>1.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>15/200</td><td>2.10</td><td>2.33e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>12/200</td><td>2.28</td><td>2.60e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>related</td><td>-</td><td>42/200</td><td>1.50</td><td>2.62e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=related">0</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>25/200</td><td>1.73</td><td>2.63e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=region">1.00E-08</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>amino</td><td>-</td><td>17/200</td><td>1.97</td><td>2.66e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=amino">1.80E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>31/200</td><td>1.61</td><td>3.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>23/200</td><td>1.75</td><td>3.20e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>20/200</td><td>1.83</td><td>3.34e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>threonine</td><td>-</td><td>15/200</td><td>2.00</td><td>3.73e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expanded</td><td>-</td><td>10/200</td><td>2.29</td><td>4.72e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>25/200</td><td>1.65</td><td>4.79e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>28/200</td><td>1.56</td><td>6.81e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G53480&keyword=response">3.49E-15</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>10/200</td><td>2.15</td><td>7.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferase</td><td>-</td><td>12/200</td><td>1.96</td><td>9.10e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
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