0.42607699999999998353
<html><body><title>AT4G34170.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u423417001000i/AT4G34170.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u423417001000i/AT4G34170.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u423417001000i/AT4G34170.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324498001000i">AT3G44980.1</a></td><td>0.838215</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322612001000i">AT3G26120.1</a></td><td>0.811814</td><td>TEL1 (TERMINAL EAR1-LIKE 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523738101000i">AT5G37381.1</a></td><td>0.798093</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221045001000i">AT2G10450.1</a></td><td>0.785999</td><td>14-3-3 protein, putative / grf15, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121203001000i">AT1G12030.1</a></td><td>0.776062</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324904001000i">AT3G49040.1</a></td><td>0.772209</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121908601000i">AT1G19086.1</a></td><td>0.766668</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321533001000i">AT3G15330.1</a></td><td>0.765397</td><td>pseudogene of the NLI interacting factor (NIF) protein family</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221268001000i">AT2G12680.1</a></td><td>0.755646</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324977001000i">AT3G49770.1</a></td><td>0.750172</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121105501000i">AT1G11055.1</a></td><td>-0.756696</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>OMAT1P003730</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324421201000i">AT3G44212.1</a></td><td>-0.718694</td><td>Encodes a Maternally expressed gene (MEG) family protein [pseudogene]</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323344801000i">AT3G33448.1</a></td><td>-0.708664</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521649001000i">AT5G16490.1</a></td><td>-0.666532</td><td>RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u326080001000i">AT3G60800.1</a></td><td>-0.664686</td><td>zinc finger (DHHC type) family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523727001000i">AT5G37270.1</a></td><td>-0.661862</td><td>zinc finger (C3HC4-type RING finger) family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223317001000i">AT2G33170.1</a></td><td>-0.659988</td><td>leucine-rich repeat transmembrane protein kinase, putative</td><td>OMAT2P107180</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u323312101000i">AT3G33121.1</a></td><td>-0.65324</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124375501000i">AT1G43755.1</a></td><td>-0.641933</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421382001000i">AT4G13820.1</a></td><td>-0.635826</td><td>disease resistance family protein / LRR family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u423417001000i/AT4G34170.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>value</td><td>-</td><td>58/200</td><td>3.45</td><td>3.87e-18</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>60/200</td><td>2.56</td><td>9.18e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>60/200</td><td>2.56</td><td>9.29e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>element</td><td>-</td><td>60/200</td><td>2.51</td><td>2.07e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>retrotransposon</td><td>-</td><td>33/200</td><td>3.26</td><td>5.34e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>copia</td><td>-</td><td>15/200</td><td>5.00</td><td>7.02e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ty1_copia</td><td>-</td><td>14/200</td><td>4.72</td><td>3.55e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pseudogene</td><td>-</td><td>28/200</td><td>2.71</td><td>4.97e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>blastp</td><td>-</td><td>12/200</td><td>4.18</td><td>7.20e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposase</td><td>-</td><td>15/200</td><td>3.30</td><td>1.50e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>14/200</td><td>3.44</td><td>1.64e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>15/200</td><td>3.21</td><td>2.13e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G34170&keyword=cyclin">1.00E-17</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>identity</td><td>-</td><td>12/200</td><td>3.67</td><td>2.86e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>polyprotein</td><td>-</td><td>11/200</td><td>3.06</td><td>2.94e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hypothetical</td><td>-</td><td>13/200</td><td>2.24</td><td>2.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>gypsy</td><td>-</td><td>12/200</td><td>2.25</td><td>2.92e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a 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without_OMAT_gene
AT4G34170.1