RARGE RIKEN Arabidopsis Genome Encyclopedia RIKEN Arabidopsis Genome Encyclopedia
HomeHistoryLinksFiles

Plant Functional Genomics Research Group Banner

RIKEN Plant Science Center

RIKEN Genomic Sciences Center

Mutant detailed information:

Line code: 11-2441-1 Map

Order: Working state
Query Position Closest Gene Distance Function
G-edge Chr.4 53040 At4g00140 -591 hypothetical protein MIPS BLASTP
At4g00150 3389 scarecrow-like 6 (SCL6) MIPS BLASTP
H-edge Chr.4 53049 At4g00140 -600 hypothetical protein MIPS BLASTP
At4g00150 3380 scarecrow-like 6 (SCL6) MIPS BLASTP

Genomic sequence flanking of Ds fragment:
G-edge
H-edge

BLASTN Result queried G-edge flanking sequence

Position

Chromosome: 4
Nucleotide No.: 53040
Score: 466
E-value: 1e-130
Identity: 241/243 (99%)
Map

Gene near isertion site

North side of insertion site
AGI code: At4g00140 MIPS
Function: hypothetical protein
Insertion region: Upstream: -591

South side of insertion site
AGI code: At4g00150 MIPS
Function: scarecrow-like 6 (SCL6)
Insertion region: Downstream: 3389

BLASTN Result queried H-edge flanking sequence

Position

Chromosome: 4
Nucleotide No.: 53049
Score: 430
E-value: 1e-120
Identity: 233/237 (98%)
Map

Gene near isertion site

North side of insertion site
AGI code: At4g00140 MIPS
Function: hypothetical protein
Insertion region: Upstream: -600

South side of insertion site
AGI code: At4g00150 MIPS
Function: scarecrow-like 6 (SCL6)
Insertion region: Downstream: 3380