Positively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT1P015990 |
0.870227 |
- |
AT1G58150 |
unknown protein |
AT1G58140 |
transposable element gene |
OMAT3P012780 |
0.851634 |
- |
AT3G48680 |
GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2) |
- |
- |
OMAT4P008880 |
0.851196 |
- |
AT4G27690 |
VPS26B (VACUOLAR PROTEIN SORTING 26B) |
- |
- |
OMAT5P006980 |
0.846352 |
- |
AT5G20120 |
unknown protein |
- |
- |
OMAT1P016375 |
0.845971 |
- |
AT1G59900 |
AT-E1 ALPHA |
- |
- |
OMAT3P017700 |
0.838259 |
- |
AT3G62130 |
epimerase-related |
- |
- |
OMAT1P014535 |
0.82579 |
- |
AT1G52740 |
HTA9 (HISTONE H2A PROTEIN 9) |
- |
- |
OMAT5P014100 |
0.819378 |
- |
AT5G49400 |
zinc knuckle (CCHC-type) family protein |
- |
- |
OMAT5P020580 |
0.818827 |
- |
AT5G66360 |
ribosomal RNA adenine dimethylase family protein |
- |
- |
OMAT3P010730 |
0.817259 |
- |
AT3G28730 |
ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) |
- |
- |
Negatively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT5P100430 |
-0.760915 |
- |
AT5G02380 |
MT2B (METALLOTHIONEIN 2B) |
AT5G02370 |
kinesin motor protein-related |
OMAT2P002950 |
-0.693724 |
- |
- |
- |
AT2G18540 |
cupin family protein |
OMAT3P012300 |
-0.681245 |
- |
AT3G47540 |
chitinase, putative |
- |
- |
OMAT1P111410 |
-0.649987 |
- |
- |
- |
AT1G45688 |
unknown protein |
OMAT2P004810 |
-0.649622 |
- |
- |
- |
AT2G23810 |
TET8 (TETRASPANIN8) |
OMAT4P101120 |
-0.646797 |
- |
- |
- |
AT4G03280 |
PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) |
OMAT5P103415 |
-0.638994 |
- |
AT5G12140 |
ATCYS1 (A. thaliana cystatin-1) |
- |
- |
OMAT3P109770 |
-0.638112 |
- |
AT3G43190 |
SUS4 |
- |
- |
OMAT3P107880 |
-0.636183 |
- |
- |
- |
AT3G23820 |
GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6) |
OMAT4P104150 |
-0.625127 |
- |
- |
- |
AT4G16990 |
RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) |
Type of term (*1) |
Depth of the term in ontology tree |
ID/Term |
Description |
Number of genes |
Over-Representative rate (*2) |
p-value (*3) |
PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
---|
B |
5 |
GO:0090304 |
nucleic acid metabolic process |
25/200 |
1.66 |
4.44e-03 |
- |
no |
B |
5 |
GO:0016070 |
RNA metabolic process |
16/200 |
1.88 |
5.39e-03 |
- |
no |
B |
3 |
GO:0009056 |
catabolic process |
10/200 |
2.10 |
8.89e-03 |
- |
no |
|
C |
3 |
GO:0005622 |
intracellular |
83/200 |
1.56 |
1.67e-06 |
- |
yes |
C |
3 |
GO:0044424 |
intracellular part |
78/200 |
1.53 |
8.97e-06 |
- |
yes |
C |
4 |
GO:0043231 |
intracellular membrane-bounded organelle |
69/200 |
1.57 |
1.61e-05 |
- |
yes |
C |
3 |
GO:0043227 |
membrane-bounded organelle |
69/200 |
1.57 |
1.62e-05 |
- |
yes |
C |
3 |
GO:0043229 |
intracellular organelle |
70/200 |
1.52 |
4.65e-05 |
- |
yes |
C |
4 |
GO:0005737 |
cytoplasm |
59/200 |
1.58 |
7.56e-05 |
- |
yes |
C |
5 |
GO:0005634 |
nucleus |
30/200 |
1.92 |
1.95e-04 |
- |
no |
C |
4 |
GO:0044444 |
cytoplasmic part |
53/200 |
1.53 |
4.30e-04 |
- |
yes |
C |
5 |
GO:0005739 |
mitochondrion |
14/200 |
2.19 |
2.06e-03 |
- |
no |
C |
3 |
GO:0043234 |
protein complex |
13/200 |
1.99 |
6.37e-03 |
- |
no |
|
M |
3 |
GO:0003676 |
nucleic acid binding |
41/200 |
1.73 |
1.57e-04 |
- |
no |
M |
3 |
GO:0005515 |
protein binding |
30/200 |
1.92 |
1.98e-04 |
- |
no |
M |
4 |
GO:0003677 |
DNA binding |
23/200 |
1.66 |
6.11e-03 |
- |
no |
|
PS |
4 |
PO:0009047 |
stem |
165/200 |
1.96 |
1.11e-32 |
- |
yes |
PS |
3 |
PO:0009013 |
meristem |
159/200 |
1.98 |
8.42e-31 |
- |
yes |
PS |
4 |
PO:0000230 |
inflorescence meristem |
156/200 |
2.01 |
1.99e-30 |
- |
yes |
PS |
5 |
PO:0009052 |
pedicel |
158/200 |
1.94 |
2.41e-29 |
- |
yes |
PS |
4 |
PO:0000037 |
shoot apex |
162/200 |
1.88 |
4.32e-29 |
- |
yes |
PS |
5 |
PO:0020039 |
leaf lamina |
158/200 |
1.92 |
1.46e-28 |
- |
yes |
PS |
4 |
PO:0009025 |
leaf |
166/200 |
1.81 |
3.44e-28 |
- |
yes |
PS |
5 |
PO:0000013 |
cauline leaf |
152/200 |
1.97 |
8.69e-28 |
- |
yes |
PS |
5 |
PO:0008037 |
seedling |
161/200 |
1.82 |
7.62e-27 |
- |
yes |
PS |
3 |
PO:0009005 |
root |
162/200 |
1.80 |
1.85e-26 |
- |
yes |
PS |
5 |
PO:0009027 |
megasporophyll |
156/200 |
1.86 |
4.48e-26 |
- |
yes |
PS |
3 |
PO:0009031 |
sepal |
163/200 |
1.76 |
1.15e-25 |
- |
yes |
PS |
4 |
PO:0020030 |
cotyledon |
145/200 |
1.97 |
1.41e-25 |
- |
no |
PS |
5 |
PO:0009028 |
microsporophyll |
155/200 |
1.85 |
1.93e-25 |
- |
yes |
PS |
4 |
PO:0009009 |
embryo |
166/200 |
1.72 |
3.32e-25 |
- |
yes |
PS |
3 |
PO:0009032 |
petal |
158/200 |
1.80 |
4.26e-25 |
- |
yes |
PS |
5 |
PO:0020038 |
petiole |
147/200 |
1.93 |
4.32e-25 |
- |
yes |
PS |
5 |
PO:0008034 |
leaf whorl |
163/200 |
1.73 |
1.82e-24 |
- |
yes |
PS |
4 |
PO:0008033 |
phyllome whorl |
163/200 |
1.73 |
1.82e-24 |
- |
yes |
PS |
3 |
PO:0009010 |
seed |
166/200 |
1.70 |
1.82e-24 |
- |
yes |
PS |
4 |
PO:0009001 |
fruit |
166/200 |
1.69 |
3.71e-24 |
- |
yes |
PS |
3 |
PO:0006342 |
infructescence |
166/200 |
1.69 |
3.71e-24 |
- |
yes |
PS |
3 |
PO:0006001 |
phyllome |
169/200 |
1.65 |
8.00e-24 |
- |
yes |
PS |
4 |
PO:0009026 |
sporophyll |
157/200 |
1.74 |
5.95e-23 |
- |
yes |
PS |
3 |
PO:0020091 |
male gametophyte |
150/200 |
1.81 |
1.10e-22 |
- |
no |
PS |
3 |
PO:0009006 |
shoot |
171/200 |
1.57 |
8.33e-22 |
- |
yes |
PS |
5 |
PO:0009046 |
flower |
166/200 |
1.60 |
7.21e-21 |
- |
yes |
PS |
4 |
PO:0009049 |
inflorescence |
166/200 |
1.59 |
1.59e-20 |
- |
yes |
PS |
3 |
PO:0000084 |
sperm cell |
76/200 |
2.34 |
2.76e-14 |
- |
no |
PS |
3 |
PO:0020097 |
generative cell |
76/200 |
2.34 |
2.76e-14 |
- |
no |
PS |
4 |
PO:0006345 |
pollen tube |
52/200 |
1.78 |
7.40e-06 |
- |
no |
PS |
3 |
PO:0000070 |
meristemoid |
20/200 |
1.85 |
2.90e-03 |
- |
no |
PS |
5 |
PO:0000349 |
epidermal initial |
20/200 |
1.77 |
4.63e-03 |
- |
no |
PS |
4 |
PO:0004011 |
initial cell |
20/200 |
1.76 |
4.98e-03 |
- |
no |
PS |
3 |
PO:0004010 |
meristematic cell |
20/200 |
1.76 |
5.06e-03 |
- |
no |
PS |
4 |
PO:0000293 |
guard cell |
19/200 |
1.77 |
5.80e-03 |
- |
no |
PS |
4 |
PO:0000351 |
guard mother cell |
19/200 |
1.76 |
6.08e-03 |
- |
no |
PS |
5 |
PO:0006016 |
leaf epidermis |
19/200 |
1.71 |
8.22e-03 |
- |
no |
PS |
3 |
PO:0004013 |
epidermal cell |
20/200 |
1.68 |
8.57e-03 |
- |
no |
PS |
5 |
PO:0006035 |
shoot epidermis |
19/200 |
1.70 |
8.84e-03 |
- |
no |
|
PG |
5 |
PO:0001081 |
F mature embryo stage |
159/200 |
2.00 |
2.19e-31 |
- |
yes |
PG |
5 |
PO:0001185 |
C globular stage |
161/200 |
1.96 |
3.95e-31 |
- |
yes |
PG |
5 |
PO:0004507 |
D bilateral stage |
161/200 |
1.95 |
6.71e-31 |
- |
yes |
PG |
5 |
PO:0001078 |
E expanded cotyledon stage |
160/200 |
1.93 |
1.13e-29 |
- |
yes |
PG |
3 |
PO:0007134 |
A vegetative growth |
160/200 |
1.89 |
1.75e-28 |
- |
yes |
PG |
5 |
PO:0007133 |
leaf production |
159/200 |
1.89 |
3.85e-28 |
- |
yes |
PG |
4 |
PO:0007112 |
1 main shoot growth |
159/200 |
1.89 |
3.96e-28 |
- |
yes |
PG |
4 |
PO:0007631 |
embryo development stages |
163/200 |
1.81 |
3.71e-27 |
- |
yes |
PG |
3 |
PO:0001170 |
seed development stages |
163/200 |
1.80 |
6.68e-27 |
- |
yes |
PG |
4 |
PO:0001054 |
4 leaf senescence stage |
150/200 |
1.95 |
1.32e-26 |
- |
yes |
PG |
3 |
PO:0001050 |
leaf development stages |
150/200 |
1.95 |
1.41e-26 |
- |
yes |
PG |
5 |
PO:0007604 |
corolla developmental stages |
165/200 |
1.67 |
3.21e-23 |
- |
yes |
PG |
4 |
PO:0007616 |
4 anthesis |
162/200 |
1.67 |
3.51e-22 |
- |
yes |
PG |
4 |
PO:0007600 |
3 floral organ development stages |
166/200 |
1.63 |
4.44e-22 |
- |
yes |
PG |
3 |
PO:0007615 |
flower development stages |
166/200 |
1.58 |
1.76e-20 |
- |
yes |
PG |
5 |
PO:0007605 |
androecium developmental stages |
65/200 |
2.22 |
4.86e-11 |
- |
no |
|
KW |
0 |
complex |
- |
22/200 |
2.60 |
1.46e-05 |
- |
no |
KW |
0 |
ligase |
- |
13/200 |
3.33 |
4.29e-05 |
- |
no |
KW |
0 |
ubiquitin |
- |
14/200 |
3.12 |
5.15e-05 |
- |
no |
KW |
0 |
cellular_component |
- |
69/200 |
1.42 |
4.70e-04 |
- |
no |
KW |
0 |
finger |
- |
19/200 |
2.05 |
1.04e-03 |
- |
no |
KW |
0 |
nucleus |
- |
24/200 |
1.86 |
1.18e-03 |
- |
no |
KW |
0 |
containing |
- |
29/200 |
1.74 |
1.22e-03 |
- |
no |
KW |
0 |
mitochondrion |
- |
13/200 |
2.37 |
1.33e-03 |
- |
no |
KW |
0 |
intracellular |
- |
12/200 |
2.33 |
2.19e-03 |
- |
no |
KW |
0 |
nucleic |
- |
14/200 |
2.14 |
2.52e-03 |
- |
no |
KW |
0 |
biological_process |
- |
76/200 |
1.27 |
5.51e-03 |
- |
yes |
KW |
0 |
transcription |
- |
24/200 |
1.65 |
5.60e-03 |
- |
no |
KW |
0 |
subunit |
- |
14/200 |
1.91 |
7.15e-03 |
- |
no |
KW |
0 |
encodes |
- |
37/200 |
1.45 |
7.61e-03 |
- |
no |
KW |
0 |
cyclin |
- |
10/200 |
2.14 |
7.70e-03 |
- |
no |
(*1) |
[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) |
([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
|
(*3) |
P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200
highly correlated genes, while we had N genes
with the term in the whole genes. |
(*4) |
PosMed is a system which serve a p-values showing a relationship
between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or
protein-protein interactions. |