OMAT1P004060 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P021540 0.874906 - AT1G74210 glycerophosphoryl diester phosphodiesterase family protein - -
OMAT1P016750 0.853181 - AT1G61670 FUNCTIONS IN: molecular_function unknown - -
OMAT5P016160 0.853026 - AT5G54800 GPT1 - -
OMAT3P011900 0.846293 - AT3G46220 unknown protein - -
OMAT2P101790 0.843232 - AT2G15440 unknown protein - -
OMAT2P102840 0.837153 - AT2G19570 CDA1 (CYTIDINE DEAMINASE 1) - -
OMAT3P017950 0.834041 - AT3G62830 AUD1 - -
OMAT3P015840 0.830684 - AT3G56740 ubiquitin-associated (UBA)/TS-N domain-containing protein - -
OMAT1P021530 0.830361 - AT1G74210 glycerophosphoryl diester phosphodiesterase family protein - -
OMAT3P009490 0.828484 - AT3G25260 proton-dependent oligopeptide transport (POT) family protein - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT2P107940 -0.874526 - AT2G35390 ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) - -
OMAT2P001210 -0.850863 - AT2G05380 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) - -
OMAT4P100650 -0.846439 - AT4G01800 preprotein translocase secA subunit, putative - -
OMAT1P112660 -0.844197 - AT1G52000 jacalin lectin family protein - -
OMAT5P118140 -0.843497 - - - AT5G65960 unknown protein
OMAT4P104180 -0.840988 - AT4G17040 ATP-dependent Clp protease proteolytic subunit, putative - -
OMAT3P108800 -0.833293 - AT3G26900 shikimate kinase family protein - -
OMAT1P101320 -0.831385 - AT1G05010 EFE (ETHYLENE-FORMING ENZYME) - -
OMAT2P105820 -0.824443 - AT2G28800 ALB3 (ALBINO 3) - -
OMAT2P102670 -0.823005 - AT2G18710 SCY1 (SecY Homolog 1) - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0019748 secondary metabolic process 10/200 4.32 2.40e-05 - no
B 3 GO:0044281 small molecule metabolic process 20/200 2.23 2.82e-04 - no
B 3 GO:0007275 multicellular organismal development 22/200 2.07 4.24e-04 - no
B 4 GO:0048513 organ development 12/200 2.71 5.55e-04 - no
B 4 GO:0048731 system development 12/200 2.71 5.62e-04 - no
B 4 GO:0005975 carbohydrate metabolic process 13/200 2.50 8.12e-04 - yes
B 4 GO:0006629 lipid metabolic process 11/200 2.53 1.53e-03 - no
B 3 GO:0048856 anatomical structure development 18/200 2.01 1.70e-03 - no
B 4 GO:0044283 small molecule biosynthetic process 11/200 2.42 2.18e-03 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 19/200 1.88 2.98e-03 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 18/200 1.80 5.83e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 18/200 1.79 5.94e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 18/200 1.79 5.94e-03 - no
B 4 GO:0031323 regulation of cellular metabolic process 19/200 1.76 6.12e-03 - no
B 4 GO:0080090 regulation of primary metabolic process 18/200 1.71 9.60e-03 - no
C 3 GO:0044464 cell part 129/200 1.41 3.03e-08 - yes
C 3 GO:0012505 endomembrane system 45/200 1.85 1.31e-05 - no
C 3 GO:0016020 membrane 41/200 1.50 2.87e-03 3.64E-21 yes
M 3 GO:0016491 oxidoreductase activity 19/200 2.25 3.28e-04 - no
M 3 GO:0003700 transcription factor activity 20/200 1.98 1.26e-03 - no
M 4 GO:0003677 DNA binding 23/200 1.66 6.11e-03 - no
M 4 GO:0016788 hydrolase activity, acting on ester bonds 12/200 2.02 7.08e-03 - no
PS 3 PO:0009006 shoot 150/200 1.38 4.14e-10 - yes
PS 4 PO:0009001 fruit 140/200 1.42 6.95e-10 - yes
PS 3 PO:0006342 infructescence 140/200 1.42 6.95e-10 - yes
PS 5 PO:0009046 flower 145/200 1.39 9.40e-10 - yes
PS 4 PO:0009049 inflorescence 145/200 1.39 1.60e-09 - yes
PS 3 PO:0009010 seed 137/200 1.40 6.50e-09 - yes
PS 4 PO:0009009 embryo 135/200 1.40 1.33e-08 - yes
PS 3 PO:0009032 petal 124/200 1.41 7.69e-08 - yes
PS 3 PO:0006001 phyllome 138/200 1.35 1.16e-07 - yes
PS 5 PO:0009052 pedicel 113/200 1.39 2.14e-06 - yes
PS 4 PO:0009026 sporophyll 121/200 1.34 3.74e-06 - yes
PS 5 PO:0008034 leaf whorl 125/200 1.33 4.47e-06 - yes
PS 4 PO:0008033 phyllome whorl 125/200 1.33 4.47e-06 - yes
PS 5 PO:0009027 megasporophyll 114/200 1.36 6.72e-06 - yes
PS 3 PO:0009031 sepal 122/200 1.32 9.13e-06 - yes
PS 3 PO:0009005 root 118/200 1.31 2.52e-05 - yes
PS 3 PO:0009013 meristem 106/200 1.32 9.10e-05 - yes
PS 4 PO:0000230 inflorescence meristem 101/200 1.30 3.10e-04 - yes
PS 4 PO:0000037 shoot apex 108/200 1.26 6.92e-04 - yes
PS 5 PO:0009028 microsporophyll 105/200 1.25 1.01e-03 - yes
PS 3 PO:0020091 male gametophyte 101/200 1.22 3.97e-03 - yes
PS 5 PO:0008037 seedling 106/200 1.20 4.75e-03 - yes
PS 4 PO:0009047 stem 102/200 1.21 4.81e-03 - yes
PS 4 PO:0009025 leaf 108/200 1.17 9.40e-03 - yes
PG 5 PO:0007604 corolla developmental stages 138/200 1.40 5.71e-09 - yes
PG 3 PO:0001170 seed development stages 129/200 1.43 1.30e-08 - yes
PG 4 PO:0007600 3 floral organ development stages 139/200 1.36 3.11e-08 - yes
PG 3 PO:0007615 flower development stages 141/200 1.35 5.47e-08 - yes
PG 4 PO:0007616 4 anthesis 133/200 1.37 8.87e-08 - yes
PG 5 PO:0001185 C globular stage 118/200 1.44 9.96e-08 - yes
PG 4 PO:0007631 embryo development stages 125/200 1.39 2.26e-07 - yes
PG 5 PO:0004507 D bilateral stage 107/200 1.30 1.66e-04 - yes
PG 5 PO:0001078 E expanded cotyledon stage 107/200 1.29 2.36e-04 - yes
PG 5 PO:0001081 F mature embryo stage 103/200 1.29 2.98e-04 - yes
KW 0 globular - 17/200 4.53 5.13e-08 - no
KW 0 differentiation - 37/200 2.45 1.17e-07 - no
KW 0 expansion - 34/200 2.31 1.41e-06 - no
KW 0 system - 47/200 1.94 2.30e-06 - no
KW 0 petal - 33/200 2.26 3.29e-06 - no
KW 0 endomembrane - 45/200 1.90 6.43e-06 - no
KW 0 stage - 38/200 1.96 1.77e-05 - no
KW 0 development - 19/200 2.72 2.57e-05 - no
KW 0 process - 39/200 1.90 2.76e-05 - yes
KW 0 anthesis - 28/200 2.13 5.12e-05 - no
KW 0 metabolic - 23/200 2.00 5.28e-04 - yes
KW 0 region - 27/200 1.87 5.86e-04 - no
KW 0 lipid - 10/200 2.91 7.32e-04 - no
KW 0 biosynthetic - 16/200 2.24 8.94e-04 - no
KW 0 hydrolase - 16/200 2.19 1.12e-03 - no
KW 0 membrane - 41/200 1.54 1.68e-03 3.64E-21 yes
KW 0 encodes - 39/200 1.53 2.51e-03 - yes
KW 0 cotyledon - 12/200 2.28 2.60e-03 - no
KW 0 transmembrane - 15/200 2.07 2.72e-03 - no
KW 0 transcription - 25/200 1.72 2.82e-03 - no
KW 0 catalytic - 19/200 1.87 3.10e-03 - no
KW 0 glycosyl - 10/200 2.35 3.96e-03 - no
KW 0 embryo - 14/200 2.02 4.43e-03 - no
KW 0 flower - 15/200 1.96 4.44e-03 - no
KW 0 conserved - 23/200 1.70 4.63e-03 - yes
KW 0 function - 25/200 1.60 7.10e-03 - no
KW 0 expression - 10/200 2.07 9.78e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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