Positively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT1P003020 |
0.950275 |
- |
AT1G08930 |
ERD6 (EARLY RESPONSE TO DEHYDRATION 6) |
- |
- |
OMAT2P012370 |
0.940424 |
- |
AT2G44490 |
PEN2 (PENETRATION 2) |
- |
- |
OMAT5P020740 |
0.92913 |
- |
AT5G66790 |
protein kinase family protein |
- |
- |
OMAT1P001140 |
0.902571 |
- |
AT1G03740 |
ATP binding / kinase/ protein kinase/ protein serine/threonine kinase |
- |
- |
OMAT4P100480 |
0.898043 |
- |
AT4G01090 |
extra-large G-protein-related |
- |
- |
OMAT5P110840 |
0.88845 |
- |
AT5G44290 |
protein kinase family protein |
- |
- |
OMAT3P013540 |
0.877391 |
- |
AT3G50950 |
disease resistance protein (CC-NBS-LRR class), putative |
- |
- |
OMAT1P103530 |
0.877045 |
- |
AT1G10920 |
LOV1 |
- |
- |
OMAT4P101730 |
0.870102 |
- |
AT4G08850 |
kinase |
- |
- |
OMAT5P118030 |
0.864544 |
- |
AT5G65600,AT5G65609 |
[AT5G65600]legume lectin family protein / protein kinase family protein, [AT5G65609]unknown protein |
- |
- |
Negatively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT2P011600 |
-0.750098 |
- |
AT2G42680 |
MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) |
- |
- |
OMAT1P009940 |
-0.745333 |
- |
AT1G27950 |
LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) |
- |
- |
OMAT4P002220 |
-0.744008 |
- |
AT4G09030 |
AGP10 (ARABINOGALACTAN PROTEIN 10) |
- |
- |
OMAT3P003060 |
-0.74238 |
- |
AT3G08970 |
ATERDJ3A |
- |
- |
OMAT1P019790 |
-0.729876 |
- |
AT1G69680 |
FUNCTIONS IN: molecular_function unknown |
- |
- |
OMAT4P010370 |
-0.728616 |
- |
AT4G31300 |
PBA1 |
- |
- |
OMAT2P111590 |
-0.717479 |
- |
AT2G45070 |
SEC61 BETA |
- |
- |
OMAT3P002740 |
-0.717467 |
- |
AT3G07680 |
emp24/gp25L/p24 family protein |
- |
- |
OMAT1P009930 |
-0.712336 |
- |
AT1G27950 |
LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1) |
- |
- |
OMAT1P113270 |
-0.708792 |
- |
AT1G53750 |
RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) |
- |
- |
Type of term (*1) |
Depth of the term in ontology tree |
ID/Term |
Description |
Number of genes |
Over-Representative rate (*2) |
p-value (*3) |
PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
---|
B |
4 |
GO:0006952 |
defense response |
41/200 |
9.01 |
3.41e-28 |
3.45E-17 |
yes |
B |
3 |
GO:0006950 |
response to stress |
52/200 |
4.19 |
6.96e-20 |
- |
yes |
B |
3 |
GO:0006955 |
immune response |
23/200 |
12.14 |
1.62e-19 |
3.32E-16 |
yes |
B |
4 |
GO:0045087 |
innate immune response |
22/200 |
12.40 |
5.73e-19 |
3.23E-17 |
yes |
B |
3 |
GO:0008219 |
cell death |
20/200 |
13.80 |
2.11e-18 |
3.69E-16 |
no |
B |
4 |
GO:0012501 |
programmed cell death |
18/200 |
14.39 |
3.86e-17 |
- |
no |
B |
3 |
GO:0009607 |
response to biotic stimulus |
23/200 |
6.36 |
3.11e-13 |
- |
yes |
B |
3 |
GO:0051707 |
response to other organism |
22/200 |
6.57 |
5.04e-13 |
- |
yes |
B |
5 |
GO:0006915 |
apoptosis |
12/200 |
14.05 |
4.01e-12 |
- |
no |
B |
5 |
GO:0050832 |
defense response to fungus |
10/200 |
13.30 |
2.88e-10 |
- |
yes |
B |
5 |
GO:0006796 |
phosphate metabolic process |
26/200 |
3.92 |
7.01e-10 |
- |
no |
B |
4 |
GO:0006793 |
phosphorus metabolic process |
26/200 |
3.91 |
7.15e-10 |
- |
no |
B |
5 |
GO:0006464 |
protein modification process |
33/200 |
3.17 |
1.08e-09 |
- |
no |
B |
4 |
GO:0009620 |
response to fungus |
10/200 |
10.08 |
5.55e-09 |
8.87E-14 |
yes |
B |
4 |
GO:0007165 |
signal transduction |
16/200 |
5.57 |
5.91e-09 |
6.36E-16 |
no |
B |
4 |
GO:0009617 |
response to bacterium |
12/200 |
7.76 |
6.36e-09 |
- |
yes |
B |
4 |
GO:0043412 |
macromolecule modification |
33/200 |
2.91 |
9.34e-09 |
- |
no |
B |
3 |
GO:0023046 |
signaling process |
16/200 |
4.94 |
3.42e-08 |
5.04E-17 |
no |
B |
3 |
GO:0023060 |
signal transmission |
16/200 |
4.94 |
3.42e-08 |
- |
no |
B |
3 |
GO:0050789 |
regulation of biological process |
41/200 |
2.37 |
5.78e-08 |
- |
yes |
B |
3 |
GO:0023033 |
signaling pathway |
14/200 |
4.14 |
1.81e-06 |
- |
no |
B |
3 |
GO:0050794 |
regulation of cellular process |
33/200 |
2.16 |
8.58e-06 |
- |
no |
B |
3 |
GO:0051716 |
cellular response to stimulus |
15/200 |
3.39 |
1.08e-05 |
- |
yes |
B |
4 |
GO:0033554 |
cellular response to stress |
10/200 |
4.63 |
1.26e-05 |
- |
yes |
B |
3 |
GO:0042221 |
response to chemical stimulus |
26/200 |
2.28 |
2.90e-05 |
- |
yes |
B |
5 |
GO:0044267 |
cellular protein metabolic process |
37/200 |
1.81 |
1.23e-04 |
- |
no |
B |
4 |
GO:0010033 |
response to organic substance |
16/200 |
2.39 |
4.30e-04 |
- |
no |
B |
4 |
GO:0048513 |
organ development |
12/200 |
2.71 |
5.55e-04 |
- |
no |
B |
3 |
GO:0044237 |
cellular metabolic process |
67/200 |
1.42 |
5.56e-04 |
- |
yes |
B |
4 |
GO:0048731 |
system development |
12/200 |
2.71 |
5.62e-04 |
- |
no |
B |
3 |
GO:0048856 |
anatomical structure development |
19/200 |
2.12 |
6.93e-04 |
- |
no |
B |
4 |
GO:0019538 |
protein metabolic process |
38/200 |
1.65 |
7.14e-04 |
- |
no |
B |
4 |
GO:0044260 |
cellular macromolecule metabolic process |
51/200 |
1.45 |
1.90e-03 |
- |
no |
B |
3 |
GO:0009719 |
response to endogenous stimulus |
12/200 |
2.33 |
2.17e-03 |
- |
no |
B |
3 |
GO:0007275 |
multicellular organismal development |
20/200 |
1.88 |
2.32e-03 |
- |
no |
B |
3 |
GO:0006810 |
transport |
19/200 |
1.85 |
3.41e-03 |
8.46E-16 |
yes |
B |
3 |
GO:0044238 |
primary metabolic process |
66/200 |
1.33 |
3.41e-03 |
- |
yes |
B |
3 |
GO:0051234 |
establishment of localization |
19/200 |
1.85 |
3.52e-03 |
- |
yes |
B |
3 |
GO:0009791 |
post-embryonic development |
12/200 |
2.03 |
6.85e-03 |
- |
no |
B |
3 |
GO:0043170 |
macromolecule metabolic process |
52/200 |
1.34 |
8.23e-03 |
- |
no |
B |
4 |
GO:0009725 |
response to hormone stimulus |
10/200 |
2.12 |
8.35e-03 |
- |
no |
|
C |
3 |
GO:0016020 |
membrane |
64/200 |
2.34 |
7.61e-12 |
3.64E-21 |
yes |
C |
4 |
GO:0005886 |
plasma membrane |
37/200 |
2.99 |
5.63e-10 |
3.64E-21 |
yes |
C |
3 |
GO:0044464 |
cell part |
131/200 |
1.43 |
5.76e-09 |
- |
yes |
C |
4 |
GO:0031224 |
intrinsic to membrane |
15/200 |
2.80 |
1.08e-04 |
- |
no |
C |
3 |
GO:0044425 |
membrane part |
17/200 |
2.15 |
1.05e-03 |
- |
no |
|
M |
5 |
GO:0016301 |
kinase activity |
34/200 |
4.23 |
2.17e-13 |
- |
no |
M |
5 |
GO:0004888 |
transmembrane receptor activity |
13/200 |
13.51 |
1.09e-12 |
- |
no |
M |
4 |
GO:0004872 |
receptor activity |
14/200 |
11.94 |
1.10e-12 |
- |
no |
M |
4 |
GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
35/200 |
3.82 |
1.88e-12 |
- |
no |
M |
3 |
GO:0005515 |
protein binding |
46/200 |
2.94 |
6.42e-12 |
0 |
no |
M |
3 |
GO:0004871 |
signal transducer activity |
15/200 |
6.67 |
1.23e-09 |
- |
no |
M |
5 |
GO:0030554 |
adenyl nucleotide binding |
30/200 |
3.32 |
2.11e-09 |
- |
no |
M |
4 |
GO:0001883 |
purine nucleoside binding |
30/200 |
3.32 |
2.11e-09 |
- |
no |
M |
3 |
GO:0001882 |
nucleoside binding |
30/200 |
3.31 |
2.24e-09 |
- |
no |
M |
3 |
GO:0000166 |
nucleotide binding |
37/200 |
2.80 |
3.30e-09 |
- |
no |
M |
5 |
GO:0032555 |
purine ribonucleotide binding |
30/200 |
3.06 |
1.41e-08 |
- |
no |
M |
4 |
GO:0032553 |
ribonucleotide binding |
30/200 |
3.06 |
1.41e-08 |
- |
no |
M |
4 |
GO:0017076 |
purine nucleotide binding |
31/200 |
2.99 |
1.41e-08 |
- |
no |
M |
3 |
GO:0016740 |
transferase activity |
40/200 |
2.45 |
3.55e-08 |
- |
no |
M |
5 |
GO:0016773 |
phosphotransferase activity, alcohol group as acceptor |
19/200 |
3.06 |
4.75e-06 |
- |
no |
M |
5 |
GO:0015075 |
ion transmembrane transporter activity |
12/200 |
3.83 |
1.83e-05 |
- |
yes |
M |
3 |
GO:0022857 |
transmembrane transporter activity |
16/200 |
2.85 |
5.50e-05 |
- |
yes |
M |
4 |
GO:0022891 |
substrate-specific transmembrane transporter activity |
13/200 |
2.95 |
1.55e-04 |
- |
yes |
M |
4 |
GO:0022804 |
active transmembrane transporter activity |
11/200 |
3.24 |
1.72e-04 |
- |
yes |
M |
5 |
GO:0016818 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
12/200 |
2.70 |
5.83e-04 |
- |
yes |
M |
4 |
GO:0016817 |
hydrolase activity, acting on acid anhydrides |
12/200 |
2.67 |
6.36e-04 |
- |
yes |
M |
3 |
GO:0022892 |
substrate-specific transporter activity |
13/200 |
2.52 |
7.51e-04 |
- |
yes |
|
PS |
4 |
PO:0020030 |
cotyledon |
155/200 |
2.11 |
7.06e-33 |
4.99E-18 |
yes |
PS |
4 |
PO:0009047 |
stem |
164/200 |
1.94 |
7.34e-32 |
- |
yes |
PS |
4 |
PO:0000230 |
inflorescence meristem |
157/200 |
2.02 |
3.38e-31 |
- |
yes |
PS |
3 |
PO:0009013 |
meristem |
158/200 |
1.97 |
4.97e-30 |
- |
yes |
PS |
5 |
PO:0000013 |
cauline leaf |
154/200 |
1.99 |
3.02e-29 |
- |
yes |
PS |
4 |
PO:0009025 |
leaf |
167/200 |
1.82 |
5.66e-29 |
- |
yes |
PS |
5 |
PO:0020039 |
leaf lamina |
157/200 |
1.90 |
8.00e-28 |
- |
yes |
PS |
5 |
PO:0008037 |
seedling |
162/200 |
1.84 |
1.38e-27 |
1.16E-17 |
yes |
PS |
5 |
PO:0020038 |
petiole |
148/200 |
1.94 |
9.12e-26 |
- |
yes |
PS |
5 |
PO:0008034 |
leaf whorl |
163/200 |
1.73 |
1.82e-24 |
- |
yes |
PS |
4 |
PO:0008033 |
phyllome whorl |
163/200 |
1.73 |
1.82e-24 |
- |
yes |
PS |
5 |
PO:0009028 |
microsporophyll |
151/200 |
1.80 |
9.23e-23 |
- |
yes |
PS |
3 |
PO:0006001 |
phyllome |
167/200 |
1.63 |
2.16e-22 |
- |
yes |
PS |
4 |
PO:0009009 |
embryo |
162/200 |
1.68 |
2.20e-22 |
- |
yes |
PS |
4 |
PO:0009026 |
sporophyll |
156/200 |
1.73 |
2.72e-22 |
- |
yes |
PS |
3 |
PO:0009010 |
seed |
162/200 |
1.66 |
1.10e-21 |
- |
yes |
PS |
4 |
PO:0009001 |
fruit |
162/200 |
1.65 |
2.14e-21 |
- |
yes |
PS |
3 |
PO:0006342 |
infructescence |
162/200 |
1.65 |
2.14e-21 |
- |
yes |
PS |
4 |
PO:0009049 |
inflorescence |
167/200 |
1.60 |
3.38e-21 |
- |
yes |
PS |
5 |
PO:0009046 |
flower |
166/200 |
1.60 |
7.21e-21 |
- |
yes |
PS |
3 |
PO:0009006 |
shoot |
169/200 |
1.56 |
2.07e-20 |
4.94E-19 |
yes |
PS |
4 |
PO:0000037 |
shoot apex |
144/200 |
1.67 |
2.46e-17 |
- |
yes |
PS |
3 |
PO:0009031 |
sepal |
146/200 |
1.58 |
3.39e-15 |
- |
yes |
PS |
3 |
PO:0009005 |
root |
141/200 |
1.57 |
7.78e-14 |
1.45E-16 |
yes |
PS |
3 |
PO:0009032 |
petal |
137/200 |
1.56 |
5.06e-13 |
- |
yes |
PS |
5 |
PO:0009027 |
megasporophyll |
124/200 |
1.48 |
3.73e-09 |
- |
yes |
PS |
3 |
PO:0020091 |
male gametophyte |
115/200 |
1.39 |
1.70e-06 |
- |
yes |
PS |
5 |
PO:0009052 |
pedicel |
113/200 |
1.39 |
2.14e-06 |
- |
yes |
PS |
4 |
PO:0005679 |
epidermis |
22/200 |
1.78 |
3.17e-03 |
7.47E-17 |
yes |
PS |
3 |
PO:0009014 |
dermal tissue |
22/200 |
1.78 |
3.19e-03 |
- |
yes |
PS |
5 |
PO:0006016 |
leaf epidermis |
19/200 |
1.71 |
8.22e-03 |
- |
yes |
PS |
3 |
PO:0004013 |
epidermal cell |
20/200 |
1.68 |
8.57e-03 |
1.60E-16 |
yes |
PS |
5 |
PO:0006035 |
shoot epidermis |
19/200 |
1.70 |
8.84e-03 |
- |
yes |
|
PG |
5 |
PO:0007133 |
leaf production |
161/200 |
1.91 |
1.17e-29 |
- |
yes |
PG |
4 |
PO:0007112 |
1 main shoot growth |
161/200 |
1.91 |
1.21e-29 |
- |
yes |
PG |
3 |
PO:0007134 |
A vegetative growth |
161/200 |
1.90 |
3.05e-29 |
- |
yes |
PG |
4 |
PO:0001054 |
4 leaf senescence stage |
149/200 |
1.94 |
6.47e-26 |
- |
yes |
PG |
3 |
PO:0001050 |
leaf development stages |
149/200 |
1.94 |
6.91e-26 |
- |
yes |
PG |
4 |
PO:0007616 |
4 anthesis |
160/200 |
1.65 |
7.29e-21 |
- |
yes |
PG |
3 |
PO:0007615 |
flower development stages |
165/200 |
1.58 |
7.99e-20 |
- |
yes |
PG |
5 |
PO:0007604 |
corolla developmental stages |
158/200 |
1.60 |
1.17e-18 |
- |
yes |
PG |
4 |
PO:0007600 |
3 floral organ development stages |
159/200 |
1.56 |
1.31e-17 |
- |
yes |
PG |
4 |
PO:0007631 |
embryo development stages |
139/200 |
1.54 |
7.30e-13 |
- |
yes |
PG |
3 |
PO:0001170 |
seed development stages |
139/200 |
1.54 |
1.09e-12 |
- |
yes |
PG |
5 |
PO:0001078 |
E expanded cotyledon stage |
126/200 |
1.52 |
2.71e-10 |
- |
yes |
PG |
5 |
PO:0004507 |
D bilateral stage |
124/200 |
1.51 |
9.21e-10 |
- |
yes |
PG |
5 |
PO:0001081 |
F mature embryo stage |
121/200 |
1.52 |
1.01e-09 |
- |
yes |
PG |
5 |
PO:0001185 |
C globular stage |
121/200 |
1.47 |
9.10e-09 |
- |
yes |
|
KW |
0 |
leucine |
- |
40/200 |
7.62 |
9.41e-25 |
- |
no |
KW |
0 |
ipr001611 |
- |
31/200 |
10.97 |
3.02e-24 |
- |
no |
KW |
0 |
ipr002182 |
- |
21/200 |
22.10 |
9.42e-24 |
- |
no |
KW |
0 |
defense |
- |
33/200 |
9.46 |
1.27e-23 |
1.26E-16 |
no |
KW |
0 |
resistance |
- |
29/200 |
10.19 |
6.92e-22 |
1.11E-15 |
yes |
KW |
0 |
disease |
- |
22/200 |
12.57 |
4.22e-19 |
5.48E-15 |
no |
KW |
0 |
response |
- |
55/200 |
3.07 |
6.05e-15 |
3.49E-15 |
no |
KW |
0 |
receptor |
- |
28/200 |
5.89 |
7.66e-15 |
8.87E-14 |
no |
KW |
0 |
transmembrane |
- |
34/200 |
4.68 |
1.08e-14 |
0 |
yes |
KW |
0 |
repeat |
- |
44/200 |
3.39 |
1.53e-13 |
- |
no |
KW |
0 |
ipr000157 |
- |
13/200 |
15.55 |
1.55e-13 |
- |
no |
KW |
0 |
interleukin |
- |
13/200 |
15.55 |
1.55e-13 |
- |
no |
KW |
0 |
ipr017441 |
- |
24/200 |
5.59 |
1.74e-12 |
- |
no |
KW |
0 |
membrane |
- |
64/200 |
2.40 |
2.12e-12 |
3.64E-21 |
yes |
KW |
0 |
ipr017442 |
- |
26/200 |
4.94 |
4.03e-12 |
- |
no |
KW |
0 |
phosphorylation |
- |
28/200 |
4.56 |
4.49e-12 |
- |
no |
KW |
0 |
ipr000719 |
- |
28/200 |
4.49 |
6.24e-12 |
- |
no |
KW |
0 |
apoptosis |
- |
12/200 |
13.39 |
7.43e-12 |
- |
no |
KW |
0 |
ipr011009 |
- |
28/200 |
4.33 |
1.51e-11 |
- |
no |
KW |
0 |
plasma |
- |
38/200 |
3.32 |
1.52e-11 |
3.64E-21 |
yes |
KW |
0 |
kinase |
- |
35/200 |
3.32 |
9.85e-11 |
- |
no |
KW |
0 |
amino |
- |
31/200 |
3.60 |
1.51e-10 |
1.80E-15 |
no |
KW |
0 |
ipr008271 |
- |
23/200 |
4.71 |
1.62e-10 |
- |
no |
KW |
0 |
ipr013210 |
- |
12/200 |
9.11 |
9.17e-10 |
- |
no |
KW |
0 |
intrinsic |
- |
11/200 |
9.89 |
1.51e-09 |
- |
no |
KW |
0 |
class |
- |
24/200 |
4.01 |
1.88e-09 |
- |
no |
KW |
0 |
threonine |
- |
27/200 |
3.60 |
2.18e-09 |
- |
no |
KW |
0 |
putative |
- |
50/200 |
2.17 |
3.30e-08 |
0 |
no |
KW |
0 |
transduction |
- |
16/200 |
4.84 |
4.57e-08 |
6.98E-16 |
no |
KW |
0 |
active |
- |
26/200 |
3.18 |
5.63e-08 |
1.35E-15 |
no |
KW |
0 |
serine |
- |
27/200 |
3.03 |
8.58e-08 |
- |
no |
KW |
0 |
signal |
- |
18/200 |
4.10 |
1.07e-07 |
1.02E-15 |
no |
KW |
0 |
ipr002290 |
- |
14/200 |
4.75 |
3.29e-07 |
- |
no |
KW |
0 |
ipr001245 |
- |
13/200 |
5.10 |
3.33e-07 |
- |
no |
KW |
0 |
tyrosine |
- |
15/200 |
4.23 |
6.60e-07 |
- |
no |
KW |
0 |
atpase |
- |
14/200 |
3.97 |
3.02e-06 |
0 |
yes |
KW |
0 |
ipr003593 |
- |
10/200 |
4.99 |
6.22e-06 |
- |
yes |
KW |
0 |
pathway |
- |
11/200 |
4.09 |
1.89e-05 |
8.34E-16 |
no |
KW |
0 |
related |
- |
49/200 |
1.74 |
2.66e-05 |
0 |
no |
KW |
0 |
signaling |
- |
12/200 |
3.22 |
1.05e-04 |
7.06E-16 |
no |
KW |
0 |
terminal |
- |
35/200 |
1.82 |
1.83e-04 |
- |
no |
KW |
0 |
nucleotide |
- |
16/200 |
2.51 |
2.43e-04 |
- |
no |
KW |
0 |
processes |
- |
10/200 |
3.30 |
2.59e-04 |
- |
yes |
KW |
0 |
stimulus |
- |
10/200 |
2.32 |
4.26e-03 |
- |
no |
KW |
0 |
transporter |
- |
14/200 |
2.01 |
4.46e-03 |
0 |
yes |
KW |
0 |
complex |
- |
16/200 |
1.89 |
5.17e-03 |
8.87E-14 |
no |
KW |
0 |
region |
- |
24/200 |
1.66 |
5.24e-03 |
3.00E-06 |
no |
(*1) |
[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) |
([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
|
(*3) |
P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200
highly correlated genes, while we had N genes
with the term in the whole genes. |
(*4) |
PosMed is a system which serve a p-values showing a relationship
between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or
protein-protein interactions. |