Positively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT4P101960 |
0.920389 |
- |
AT4G10070 |
KH domain-containing protein |
- |
- |
OMAT5P111900 |
0.919721 |
- |
AT5G47430 |
zinc ion binding |
- |
- |
OMAT1P004670 |
0.917829 |
- |
AT1G13190 |
RNA recognition motif (RRM)-containing protein |
- |
- |
OMAT2P100760 |
0.916671 |
- |
AT2G03470 |
myb family transcription factor / ELM2 domain-containing protein |
- |
- |
OMAT4P009140 |
0.900227 |
- |
AT4G28300 |
hydroxyproline-rich glycoprotein family protein |
- |
- |
OMAT4P106650 |
0.887077 |
- |
AT4G24740 |
AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) |
- |
- |
OMAT4P101970 |
0.885471 |
- |
AT4G10080 |
unknown protein |
- |
- |
OMAT3P109110 |
0.883069 |
- |
AT3G27700 |
RNA recognition motif (RRM)-containing protein |
- |
- |
OMAT3P009150 |
0.876689 |
- |
AT3G24070 |
zinc knuckle (CCHC-type) family protein |
- |
- |
OMAT4P002960 |
0.875592 |
- |
AT4G11660 |
AT-HSFB2B |
- |
- |
Negatively Correlated Genes |
Gens | PCC |
Definition |
Overlap gene | Definition |
Overlap gene(antisense) | Definition |
OMAT4P013830 |
-0.768773 |
- |
AT4G39730 |
lipid-associated family protein |
- |
- |
OMAT1P018090 |
-0.766445 |
- |
AT1G65295 |
unknown protein |
- |
- |
OMAT4P013700 |
-0.737152 |
- |
AT4G39390 |
NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1) |
- |
- |
OMAT3P009050 |
-0.73355 |
- |
AT3G23805 |
RALFL24 (ralf-like 24) |
- |
- |
OMAT2P100960 |
-0.722402 |
- |
AT2G04280 |
unknown protein |
- |
- |
OMAT3P006450 |
-0.721781 |
- |
AT3G17185 |
TAS3/TASIR-ARF (TRANS-ACTING SIRNA3) |
- |
- |
OMAT3P017300 |
-0.71595 |
- |
AT3G61130 |
GAUT1 (GALACTURONOSYLTRANSFERASE 1) |
- |
- |
OMAT3P112530 |
-0.708517 |
- |
AT3G52940 |
FK (FACKEL) |
- |
- |
OMAT5P013570 |
-0.708279 |
- |
AT5G47780 |
GAUT4 (Galacturonosyltransferase 4) |
- |
- |
OMAT3P009440 |
-0.707721 |
- |
AT3G25140 |
QUA1 (QUASIMODO 1) |
- |
- |
Type of term (*1) |
Depth of the term in ontology tree |
ID/Term |
Description |
Number of genes |
Over-Representative rate (*2) |
p-value (*3) |
PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
---|
B |
3 |
GO:0006950 |
response to stress |
28/200 |
2.26 |
1.79e-05 |
- |
no |
B |
3 |
GO:0042221 |
response to chemical stimulus |
24/200 |
2.10 |
1.95e-04 |
- |
no |
B |
5 |
GO:0090304 |
nucleic acid metabolic process |
27/200 |
1.80 |
1.07e-03 |
- |
no |
B |
4 |
GO:0031323 |
regulation of cellular metabolic process |
21/200 |
1.94 |
1.28e-03 |
- |
no |
B |
3 |
GO:0009628 |
response to abiotic stimulus |
16/200 |
2.16 |
1.32e-03 |
- |
no |
B |
3 |
GO:0050794 |
regulation of cellular process |
27/200 |
1.77 |
1.35e-03 |
- |
no |
B |
4 |
GO:0080090 |
regulation of primary metabolic process |
20/200 |
1.90 |
2.10e-03 |
- |
no |
B |
5 |
GO:0010556 |
regulation of macromolecule biosynthetic process |
19/200 |
1.93 |
2.18e-03 |
- |
no |
B |
5 |
GO:0019219 |
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
19/200 |
1.90 |
2.66e-03 |
- |
no |
B |
4 |
GO:0009889 |
regulation of biosynthetic process |
19/200 |
1.89 |
2.71e-03 |
- |
no |
B |
5 |
GO:0031326 |
regulation of cellular biosynthetic process |
19/200 |
1.89 |
2.71e-03 |
- |
no |
B |
4 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
28/200 |
1.66 |
2.92e-03 |
- |
no |
B |
4 |
GO:0051171 |
regulation of nitrogen compound metabolic process |
19/200 |
1.88 |
2.98e-03 |
- |
no |
B |
5 |
GO:0006350 |
transcription |
19/200 |
1.86 |
3.25e-03 |
5.00E-05 |
no |
B |
4 |
GO:0060255 |
regulation of macromolecule metabolic process |
20/200 |
1.83 |
3.30e-03 |
- |
no |
B |
4 |
GO:0034641 |
cellular nitrogen compound metabolic process |
31/200 |
1.59 |
3.46e-03 |
- |
no |
B |
3 |
GO:0019222 |
regulation of metabolic process |
21/200 |
1.78 |
3.63e-03 |
- |
no |
B |
3 |
GO:0006807 |
nitrogen compound metabolic process |
31/200 |
1.56 |
4.64e-03 |
- |
no |
B |
3 |
GO:0051716 |
cellular response to stimulus |
10/200 |
2.26 |
5.16e-03 |
- |
no |
B |
5 |
GO:0010468 |
regulation of gene expression |
19/200 |
1.78 |
5.23e-03 |
- |
no |
B |
5 |
GO:0016070 |
RNA metabolic process |
16/200 |
1.88 |
5.39e-03 |
- |
no |
B |
3 |
GO:0009719 |
response to endogenous stimulus |
11/200 |
2.13 |
5.96e-03 |
- |
no |
B |
4 |
GO:0010033 |
response to organic substance |
13/200 |
1.94 |
7.65e-03 |
- |
no |
B |
3 |
GO:0050789 |
regulation of biological process |
27/200 |
1.56 |
7.75e-03 |
- |
no |
B |
4 |
GO:0009725 |
response to hormone stimulus |
10/200 |
2.12 |
8.35e-03 |
- |
no |
|
C |
5 |
GO:0005634 |
nucleus |
29/200 |
1.85 |
4.35e-04 |
5.36E-16 |
yes |
|
M |
3 |
GO:0003700 |
transcription factor activity |
25/200 |
2.48 |
9.90e-06 |
- |
no |
M |
4 |
GO:0003677 |
DNA binding |
30/200 |
2.17 |
2.09e-05 |
0 |
yes |
M |
3 |
GO:0003676 |
nucleic acid binding |
42/200 |
1.77 |
7.51e-05 |
- |
yes |
M |
3 |
GO:0005515 |
protein binding |
27/200 |
1.73 |
1.95e-03 |
1.00E-25 |
no |
M |
5 |
GO:0046872 |
metal ion binding |
23/200 |
1.69 |
4.78e-03 |
- |
no |
M |
4 |
GO:0043169 |
cation binding |
23/200 |
1.60 |
9.41e-03 |
- |
no |
M |
3 |
GO:0043167 |
ion binding |
23/200 |
1.60 |
9.41e-03 |
0 |
no |
|
PS |
5 |
PO:0009028 |
microsporophyll |
154/200 |
1.84 |
9.40e-25 |
- |
yes |
PS |
4 |
PO:0009047 |
stem |
153/200 |
1.81 |
9.27e-24 |
- |
yes |
PS |
5 |
PO:0009027 |
megasporophyll |
151/200 |
1.80 |
1.07e-22 |
- |
yes |
PS |
4 |
PO:0009026 |
sporophyll |
156/200 |
1.73 |
2.72e-22 |
- |
yes |
PS |
4 |
PO:0000230 |
inflorescence meristem |
144/200 |
1.85 |
3.87e-22 |
- |
yes |
PS |
3 |
PO:0020091 |
male gametophyte |
148/200 |
1.78 |
2.00e-21 |
- |
yes |
PS |
3 |
PO:0009013 |
meristem |
145/200 |
1.80 |
3.95e-21 |
- |
yes |
PS |
4 |
PO:0020030 |
cotyledon |
135/200 |
1.84 |
2.25e-19 |
- |
yes |
PS |
5 |
PO:0020039 |
leaf lamina |
143/200 |
1.73 |
9.57e-19 |
- |
yes |
PS |
4 |
PO:0009025 |
leaf |
152/200 |
1.65 |
1.04e-18 |
- |
yes |
PS |
3 |
PO:0009005 |
root |
150/200 |
1.67 |
1.32e-18 |
- |
yes |
PS |
3 |
PO:0006001 |
phyllome |
160/200 |
1.56 |
7.32e-18 |
- |
yes |
PS |
5 |
PO:0000013 |
cauline leaf |
136/200 |
1.76 |
9.74e-18 |
- |
yes |
PS |
5 |
PO:0020038 |
petiole |
134/200 |
1.76 |
2.79e-17 |
- |
yes |
PS |
5 |
PO:0009052 |
pedicel |
139/200 |
1.71 |
3.82e-17 |
- |
yes |
PS |
3 |
PO:0009031 |
sepal |
149/200 |
1.61 |
8.64e-17 |
- |
yes |
PS |
3 |
PO:0009032 |
petal |
144/200 |
1.64 |
1.67e-16 |
- |
yes |
PS |
4 |
PO:0006345 |
pollen tube |
75/200 |
2.57 |
2.53e-16 |
- |
no |
PS |
5 |
PO:0008034 |
leaf whorl |
149/200 |
1.58 |
8.01e-16 |
- |
yes |
PS |
4 |
PO:0008033 |
phyllome whorl |
149/200 |
1.58 |
8.01e-16 |
- |
yes |
PS |
5 |
PO:0009046 |
flower |
157/200 |
1.51 |
2.05e-15 |
- |
yes |
PS |
4 |
PO:0009049 |
inflorescence |
157/200 |
1.50 |
4.04e-15 |
- |
yes |
PS |
3 |
PO:0009006 |
shoot |
160/200 |
1.47 |
6.43e-15 |
- |
yes |
PS |
3 |
PO:0000084 |
sperm cell |
77/200 |
2.37 |
8.27e-15 |
- |
no |
PS |
3 |
PO:0020097 |
generative cell |
77/200 |
2.37 |
8.27e-15 |
- |
no |
PS |
4 |
PO:0009009 |
embryo |
149/200 |
1.54 |
1.05e-14 |
- |
yes |
PS |
3 |
PO:0009010 |
seed |
150/200 |
1.53 |
1.19e-14 |
- |
yes |
PS |
5 |
PO:0008037 |
seedling |
141/200 |
1.60 |
1.20e-14 |
- |
yes |
PS |
4 |
PO:0009001 |
fruit |
150/200 |
1.53 |
2.07e-14 |
- |
yes |
PS |
3 |
PO:0006342 |
infructescence |
150/200 |
1.53 |
2.07e-14 |
- |
yes |
PS |
4 |
PO:0000037 |
shoot apex |
137/200 |
1.59 |
9.30e-14 |
- |
yes |
|
PG |
3 |
PO:0007134 |
A vegetative growth |
147/200 |
1.74 |
8.92e-20 |
- |
yes |
PG |
5 |
PO:0007133 |
leaf production |
146/200 |
1.74 |
1.59e-19 |
- |
yes |
PG |
4 |
PO:0007112 |
1 main shoot growth |
146/200 |
1.74 |
1.63e-19 |
- |
yes |
PG |
4 |
PO:0001054 |
4 leaf senescence stage |
137/200 |
1.78 |
1.77e-18 |
- |
yes |
PG |
3 |
PO:0001050 |
leaf development stages |
137/200 |
1.78 |
1.87e-18 |
- |
yes |
PG |
4 |
PO:0007616 |
4 anthesis |
156/200 |
1.61 |
2.17e-18 |
- |
yes |
PG |
5 |
PO:0007605 |
androecium developmental stages |
78/200 |
2.66 |
6.30e-18 |
- |
no |
PG |
5 |
PO:0007604 |
corolla developmental stages |
155/200 |
1.57 |
6.58e-17 |
- |
yes |
PG |
5 |
PO:0001078 |
E expanded cotyledon stage |
140/200 |
1.69 |
8.84e-17 |
- |
yes |
PG |
4 |
PO:0007600 |
3 floral organ development stages |
157/200 |
1.54 |
1.85e-16 |
- |
yes |
PG |
4 |
PO:0007631 |
embryo development stages |
146/200 |
1.62 |
2.42e-16 |
- |
yes |
PG |
3 |
PO:0001170 |
seed development stages |
146/200 |
1.61 |
3.81e-16 |
- |
yes |
PG |
5 |
PO:0004507 |
D bilateral stage |
138/200 |
1.68 |
4.66e-16 |
- |
yes |
PG |
5 |
PO:0001185 |
C globular stage |
137/200 |
1.67 |
1.05e-15 |
- |
yes |
PG |
3 |
PO:0007615 |
flower development stages |
158/200 |
1.51 |
1.25e-15 |
- |
yes |
PG |
5 |
PO:0001081 |
F mature embryo stage |
132/200 |
1.66 |
1.77e-14 |
- |
yes |
|
KW |
0 |
finger |
- |
29/200 |
3.14 |
1.38e-08 |
- |
no |
KW |
0 |
transcription |
- |
34/200 |
2.34 |
1.08e-06 |
5.00E-05 |
no |
KW |
0 |
ipr013083 |
- |
13/200 |
4.15 |
3.74e-06 |
- |
no |
KW |
0 |
stress |
- |
16/200 |
3.41 |
5.60e-06 |
- |
no |
KW |
0 |
factor |
- |
34/200 |
1.94 |
6.02e-05 |
- |
no |
KW |
0 |
ipr001841 |
- |
11/200 |
3.59 |
6.74e-05 |
- |
no |
KW |
0 |
response |
- |
33/200 |
1.84 |
2.15e-04 |
- |
no |
KW |
0 |
cellular_component |
- |
70/200 |
1.44 |
2.69e-04 |
- |
no |
KW |
0 |
nucleus |
- |
25/200 |
1.94 |
5.26e-04 |
5.36E-16 |
yes |
KW |
0 |
containing |
- |
29/200 |
1.74 |
1.22e-03 |
1.00E-25 |
yes |
KW |
0 |
nucleic |
- |
14/200 |
2.14 |
2.52e-03 |
- |
no |
KW |
0 |
motif |
- |
11/200 |
2.26 |
3.77e-03 |
- |
no |
(*1) |
[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
(*2) |
([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
|
(*3) |
P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200
highly correlated genes, while we had N genes
with the term in the whole genes. |
(*4) |
PosMed is a system which serve a p-values showing a relationship
between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or
protein-protein interactions. |