OMAT1P105100 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot



Expression profile (Values are plotted in Log(2) values.)


Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT4P101960 0.920389 - AT4G10070 KH domain-containing protein - -
OMAT5P111900 0.919721 - AT5G47430 zinc ion binding - -
OMAT1P004670 0.917829 - AT1G13190 RNA recognition motif (RRM)-containing protein - -
OMAT2P100760 0.916671 - AT2G03470 myb family transcription factor / ELM2 domain-containing protein - -
OMAT4P009140 0.900227 - AT4G28300 hydroxyproline-rich glycoprotein family protein - -
OMAT4P106650 0.887077 - AT4G24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) - -
OMAT4P101970 0.885471 - AT4G10080 unknown protein - -
OMAT3P109110 0.883069 - AT3G27700 RNA recognition motif (RRM)-containing protein - -
OMAT3P009150 0.876689 - AT3G24070 zinc knuckle (CCHC-type) family protein - -
OMAT4P002960 0.875592 - AT4G11660 AT-HSFB2B - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT4P013830 -0.768773 - AT4G39730 lipid-associated family protein - -
OMAT1P018090 -0.766445 - AT1G65295 unknown protein - -
OMAT4P013700 -0.737152 - AT4G39390 NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1) - -
OMAT3P009050 -0.73355 - AT3G23805 RALFL24 (ralf-like 24) - -
OMAT2P100960 -0.722402 - AT2G04280 unknown protein - -
OMAT3P006450 -0.721781 - AT3G17185 TAS3/TASIR-ARF (TRANS-ACTING SIRNA3) - -
OMAT3P017300 -0.71595 - AT3G61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) - -
OMAT3P112530 -0.708517 - AT3G52940 FK (FACKEL) - -
OMAT5P013570 -0.708279 - AT5G47780 GAUT4 (Galacturonosyltransferase 4) - -
OMAT3P009440 -0.707721 - AT3G25140 QUA1 (QUASIMODO 1) - -

Get whole results


Over-Representation Analysis Result

p-value <= 9.74e-18:20 terms with high significance
9.74e-18 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)
Found on gene annotation
B 3 GO:0006950 response to stress 28/200 2.26 1.79e-05 - no
B 3 GO:0042221 response to chemical stimulus 24/200 2.10 1.95e-04 - no
B 5 GO:0090304 nucleic acid metabolic process 27/200 1.80 1.07e-03 - no
B 4 GO:0031323 regulation of cellular metabolic process 21/200 1.94 1.28e-03 - no
B 3 GO:0009628 response to abiotic stimulus 16/200 2.16 1.32e-03 - no
B 3 GO:0050794 regulation of cellular process 27/200 1.77 1.35e-03 - no
B 4 GO:0080090 regulation of primary metabolic process 20/200 1.90 2.10e-03 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 19/200 1.93 2.18e-03 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 19/200 1.90 2.66e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 19/200 1.89 2.71e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 19/200 1.89 2.71e-03 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 28/200 1.66 2.92e-03 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 19/200 1.88 2.98e-03 - no
B 5 GO:0006350 transcription 19/200 1.86 3.25e-03 5.00E-05 no
B 4 GO:0060255 regulation of macromolecule metabolic process 20/200 1.83 3.30e-03 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 31/200 1.59 3.46e-03 - no
B 3 GO:0019222 regulation of metabolic process 21/200 1.78 3.63e-03 - no
B 3 GO:0006807 nitrogen compound metabolic process 31/200 1.56 4.64e-03 - no
B 3 GO:0051716 cellular response to stimulus 10/200 2.26 5.16e-03 - no
B 5 GO:0010468 regulation of gene expression 19/200 1.78 5.23e-03 - no
B 5 GO:0016070 RNA metabolic process 16/200 1.88 5.39e-03 - no
B 3 GO:0009719 response to endogenous stimulus 11/200 2.13 5.96e-03 - no
B 4 GO:0010033 response to organic substance 13/200 1.94 7.65e-03 - no
B 3 GO:0050789 regulation of biological process 27/200 1.56 7.75e-03 - no
B 4 GO:0009725 response to hormone stimulus 10/200 2.12 8.35e-03 - no
C 5 GO:0005634 nucleus 29/200 1.85 4.35e-04 5.36E-16 yes
M 3 GO:0003700 transcription factor activity 25/200 2.48 9.90e-06 - no
M 4 GO:0003677 DNA binding 30/200 2.17 2.09e-05 0 yes
M 3 GO:0003676 nucleic acid binding 42/200 1.77 7.51e-05 - yes
M 3 GO:0005515 protein binding 27/200 1.73 1.95e-03 1.00E-25 no
M 5 GO:0046872 metal ion binding 23/200 1.69 4.78e-03 - no
M 4 GO:0043169 cation binding 23/200 1.60 9.41e-03 - no
M 3 GO:0043167 ion binding 23/200 1.60 9.41e-03 0 no
PS 5 PO:0009028 microsporophyll 154/200 1.84 9.40e-25 - yes
PS 4 PO:0009047 stem 153/200 1.81 9.27e-24 - yes
PS 5 PO:0009027 megasporophyll 151/200 1.80 1.07e-22 - yes
PS 4 PO:0009026 sporophyll 156/200 1.73 2.72e-22 - yes
PS 4 PO:0000230 inflorescence meristem 144/200 1.85 3.87e-22 - yes
PS 3 PO:0020091 male gametophyte 148/200 1.78 2.00e-21 - yes
PS 3 PO:0009013 meristem 145/200 1.80 3.95e-21 - yes
PS 4 PO:0020030 cotyledon 135/200 1.84 2.25e-19 - yes
PS 5 PO:0020039 leaf lamina 143/200 1.73 9.57e-19 - yes
PS 4 PO:0009025 leaf 152/200 1.65 1.04e-18 - yes
PS 3 PO:0009005 root 150/200 1.67 1.32e-18 - yes
PS 3 PO:0006001 phyllome 160/200 1.56 7.32e-18 - yes
PS 5 PO:0000013 cauline leaf 136/200 1.76 9.74e-18 - yes
PS 5 PO:0020038 petiole 134/200 1.76 2.79e-17 - yes
PS 5 PO:0009052 pedicel 139/200 1.71 3.82e-17 - yes
PS 3 PO:0009031 sepal 149/200 1.61 8.64e-17 - yes
PS 3 PO:0009032 petal 144/200 1.64 1.67e-16 - yes
PS 4 PO:0006345 pollen tube 75/200 2.57 2.53e-16 - no
PS 5 PO:0008034 leaf whorl 149/200 1.58 8.01e-16 - yes
PS 4 PO:0008033 phyllome whorl 149/200 1.58 8.01e-16 - yes
PS 5 PO:0009046 flower 157/200 1.51 2.05e-15 - yes
PS 4 PO:0009049 inflorescence 157/200 1.50 4.04e-15 - yes
PS 3 PO:0009006 shoot 160/200 1.47 6.43e-15 - yes
PS 3 PO:0000084 sperm cell 77/200 2.37 8.27e-15 - no
PS 3 PO:0020097 generative cell 77/200 2.37 8.27e-15 - no
PS 4 PO:0009009 embryo 149/200 1.54 1.05e-14 - yes
PS 3 PO:0009010 seed 150/200 1.53 1.19e-14 - yes
PS 5 PO:0008037 seedling 141/200 1.60 1.20e-14 - yes
PS 4 PO:0009001 fruit 150/200 1.53 2.07e-14 - yes
PS 3 PO:0006342 infructescence 150/200 1.53 2.07e-14 - yes
PS 4 PO:0000037 shoot apex 137/200 1.59 9.30e-14 - yes
PG 3 PO:0007134 A vegetative growth 147/200 1.74 8.92e-20 - yes
PG 5 PO:0007133 leaf production 146/200 1.74 1.59e-19 - yes
PG 4 PO:0007112 1 main shoot growth 146/200 1.74 1.63e-19 - yes
PG 4 PO:0001054 4 leaf senescence stage 137/200 1.78 1.77e-18 - yes
PG 3 PO:0001050 leaf development stages 137/200 1.78 1.87e-18 - yes
PG 4 PO:0007616 4 anthesis 156/200 1.61 2.17e-18 - yes
PG 5 PO:0007605 androecium developmental stages 78/200 2.66 6.30e-18 - no
PG 5 PO:0007604 corolla developmental stages 155/200 1.57 6.58e-17 - yes
PG 5 PO:0001078 E expanded cotyledon stage 140/200 1.69 8.84e-17 - yes
PG 4 PO:0007600 3 floral organ development stages 157/200 1.54 1.85e-16 - yes
PG 4 PO:0007631 embryo development stages 146/200 1.62 2.42e-16 - yes
PG 3 PO:0001170 seed development stages 146/200 1.61 3.81e-16 - yes
PG 5 PO:0004507 D bilateral stage 138/200 1.68 4.66e-16 - yes
PG 5 PO:0001185 C globular stage 137/200 1.67 1.05e-15 - yes
PG 3 PO:0007615 flower development stages 158/200 1.51 1.25e-15 - yes
PG 5 PO:0001081 F mature embryo stage 132/200 1.66 1.77e-14 - yes
KW 0 finger - 29/200 3.14 1.38e-08 - no
KW 0 transcription - 34/200 2.34 1.08e-06 5.00E-05 no
KW 0 ipr013083 - 13/200 4.15 3.74e-06 - no
KW 0 stress - 16/200 3.41 5.60e-06 - no
KW 0 factor - 34/200 1.94 6.02e-05 - no
KW 0 ipr001841 - 11/200 3.59 6.74e-05 - no
KW 0 response - 33/200 1.84 2.15e-04 - no
KW 0 cellular_component - 70/200 1.44 2.69e-04 - no
KW 0 nucleus - 25/200 1.94 5.26e-04 5.36E-16 yes
KW 0 containing - 29/200 1.74 1.22e-03 1.00E-25 yes
KW 0 nucleic - 14/200 2.14 2.52e-03 - no
KW 0 motif - 11/200 2.26 3.77e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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