|
Gene Model | |
|
| |
|
Correlation Plot | |
|
| |
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P008630 | 0.99554 | - | AT2G34740 | catalytic/ protein serine/threonine phosphatase | - | - |
| OMAT5P009575 | 0.992157 | - | - | - | - | - |
| OMAT1P103040 | 0.990371 | - | - | - | AT1G09665 | Toll-Interleukin-Resistance (TIR) domain-containing protein |
| OMAT1P001240 | 0.989844 | - | AT1G03990 | alcohol oxidase-related | - | - |
| OMAT1P108230 | 0.986824 | - | AT1G26400 | FAD-binding domain-containing protein | - | - |
| OMAT4P007860 | 0.985794 | - | AT4G25200 | ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) | - | - |
| OMAT4P101860 | 0.985072 | - | AT4G09610 | GASA2 (GAST1 PROTEIN HOMOLOG 2) | - | - |
| OMAT3P012530 | 0.984835 | - | AT3G48270 | CYP71A26 | - | - |
| OMAT5P000230 | 0.98449 | - | AT5G01670 | aldose reductase, putative | - | - |
| OMAT2P110660 | 0.982208 | - | AT2G42000 | plant EC metallothionein-like family 15 protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P110810 | -0.899078 | - | AT2G42500 | PP2A-4 | - | - |
| OMAT3P015290 | -0.889604 | - | AT3G55440 | TPI (TRIOSEPHOSPHATE ISOMERASE) | - | - |
| OMAT1P116670 | -0.855617 | - | AT1G67090 | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) | - | - |
| OMAT4P110151 | -0.854578 | - | AT4G34720 | AVA-P1 | - | - |
| OMAT3P002940 | -0.830589 | - | AT3G08550 | KOB1 (KOBITO) | - | - |
| OMAT3P113330 | -0.82854 | - | AT3G55020 | RabGAP/TBC domain-containing protein | - | - |
| OMAT1P113460 | -0.812811 | - | AT1G54410 | dehydrin family protein | - | - |
| OMAT3P104460 | -0.801157 | - | AT3G13410 | unknown protein | - | - |
| OMAT3P103890 | -0.801138 | - | AT3G11770 | nucleic acid binding | - | - |
| OMAT3P102160 | -0.792536 | - | AT3G06350 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32) | - | - |
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0042221 | response to chemical stimulus | 22/200 | 1.93 | 1.11e-03 | - | yes |
| B | 4 | GO:0009725 | response to hormone stimulus | 10/200 | 2.12 | 8.35e-03 | - | yes |
| M | 4 | GO:0016757 | transferase activity, transferring glycosyl groups | 10/200 | 3.43 | 1.86e-04 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 19/200 | 2.25 | 3.28e-04 | - | no |
| KW | 0 | molecular_function | - | 80/200 | 1.58 | 1.52e-06 | - | no |
| KW | 0 | stage | - | 37/200 | 1.91 | 4.08e-05 | 8.35E-16 | no |
| KW | 0 | anthesis | - | 28/200 | 2.13 | 5.12e-05 | - | no |
| KW | 0 | petal | - | 30/200 | 2.06 | 5.58e-05 | 1.28E-18 | no |
| KW | 0 | expansion | - | 30/200 | 2.04 | 6.40e-05 | 1.35E-16 | no |
| KW | 0 | differentiation | - | 30/200 | 1.98 | 1.07e-04 | 8.30E-16 | no |
| KW | 0 | cellular_component | - | 70/200 | 1.44 | 2.69e-04 | - | no |
| KW | 0 | stimulus | - | 12/200 | 2.79 | 4.29e-04 | - | no |
| KW | 0 | catalytic | - | 20/200 | 1.97 | 1.36e-03 | 0 | yes |
| KW | 0 | synthase | - | 11/200 | 2.51 | 1.65e-03 | 3.53E-16 | no |
| KW | 0 | response | - | 30/200 | 1.67 | 1.90e-03 | 3.49E-15 | no |
| KW | 0 | glycosyl | - | 10/200 | 2.35 | 3.96e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |