OMAT2P005340 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT5P012650 0.930594 - AT5G45300 BMY2 (BETA-AMYLASE 2) - -
OMAT4P003240 0.920128 - AT4G12610 transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein - -
OMAT2P004130 0.909003 - AT2G21940 shikimate kinase, putative - -
OMAT1P113630 0.905566 - AT1G55080 unknown protein - -
OMAT3P005040 0.901262 - AT3G14160 oxidoreductase - -
OMAT2P000410 0.901134 - AT2G02370 FUNCTIONS IN: molecular_function unknown - -
OMAT3P013480 0.898084 - AT3G50880 HhH-GPD base excision DNA repair family protein - -
OMAT4P109350 0.894296 - AT4G32670 zinc ion binding - -
OMAT4P013880 0.890174 - AT4G39870 FUNCTIONS IN: molecular_function unknown - -
OMAT1P108760 0.888084 - AT1G27960 ECT9 (evolutionarily conserved C-terminal region 9) - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P012220 -0.764782 - - - AT1G35580 CINV1 (cytosolic invertase 1)
OMAT4P110290 -0.754521 - AT4G35000 APX3 (ASCORBATE PEROXIDASE 3) - -
OMAT3P101190 -0.75265 - AT3G03940 protein kinase family protein - -
OMAT1P118740 -0.751592 - AT1G73530 RNA recognition motif (RRM)-containing protein - -
OMAT1P110170 -0.744109 - AT1G32200 ATS1 - -
OMAT3P106360 -0.734848 - AT3G19170 ATPREP1 (PRESEQUENCE PROTEASE 1) - -
OMAT1P101390 -0.72702 - AT1G05190 emb2394 (embryo defective 2394) - -
OMAT1P117820 -0.725804 - AT1G70410 carbonic anhydrase, putative / carbonate dehydratase, putative - -
OMAT1P101360 -0.725332 - AT1G05135 pseudogene of unknown protein - -
OMAT5P105440 -0.721626 - AT5G18590 kelch repeat-containing protein - -

Get whole results

Over-Representation Analysis Result

p-value <= 8.38e-16:20 terms with high significance
8.38e-16 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 5 GO:0090304 nucleic acid metabolic process 28/200 1.86 4.99e-04 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 29/200 1.72 1.47e-03 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 30/200 1.54 6.35e-03 - no
B 5 GO:0006350 transcription 18/200 1.76 7.01e-03 - no
B 3 GO:0006807 nitrogen compound metabolic process 30/200 1.51 8.35e-03 - no
B 4 GO:0080090 regulation of primary metabolic process 18/200 1.71 9.60e-03 - no
C 5 GO:0005634 nucleus 28/200 1.79 9.33e-04 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 61/200 1.39 1.84e-03 - no
C 3 GO:0043227 membrane-bounded organelle 61/200 1.39 1.85e-03 - no
C 3 GO:0043234 protein complex 14/200 2.14 2.55e-03 - no
C 3 GO:0043229 intracellular organelle 62/200 1.34 3.86e-03 - no
C 3 GO:0005622 intracellular 68/200 1.28 8.23e-03 - no
M 4 GO:0043169 cation binding 24/200 1.67 4.89e-03 - no
M 3 GO:0043167 ion binding 24/200 1.67 4.89e-03 - no
M 5 GO:0046872 metal ion binding 22/200 1.62 9.34e-03 - no
PS 4 PO:0009047 stem 148/200 1.75 1.40e-20 - yes
PS 5 PO:0009052 pedicel 141/200 1.73 3.06e-18 - yes
PS 4 PO:0000230 inflorescence meristem 136/200 1.75 1.71e-17 - yes
PS 3 PO:0009031 sepal 150/200 1.62 2.41e-17 - yes
PS 3 PO:0009013 meristem 138/200 1.72 4.00e-17 - yes
PS 3 PO:0009005 root 147/200 1.63 6.45e-17 - yes
PS 5 PO:0009027 megasporophyll 141/200 1.68 8.22e-17 - yes
PS 3 PO:0009032 petal 144/200 1.64 1.67e-16 - yes
PS 4 PO:0009026 sporophyll 146/200 1.62 2.29e-16 - yes
PS 4 PO:0009009 embryo 152/200 1.57 2.72e-16 - yes
PS 4 PO:0009001 fruit 153/200 1.56 5.47e-16 - yes
PS 3 PO:0006342 infructescence 153/200 1.56 5.47e-16 - yes
PS 5 PO:0008034 leaf whorl 149/200 1.58 8.01e-16 - yes
PS 4 PO:0008033 phyllome whorl 149/200 1.58 8.01e-16 - yes
PS 3 PO:0009010 seed 152/200 1.55 1.07e-15 - yes
PS 5 PO:0009028 microsporophyll 138/200 1.65 2.64e-15 - yes
PS 5 PO:0008037 seedling 142/200 1.61 3.78e-15 - yes
PS 3 PO:0006001 phyllome 155/200 1.51 4.83e-15 - yes
PS 4 PO:0000037 shoot apex 138/200 1.60 3.08e-14 - yes
PS 4 PO:0009049 inflorescence 155/200 1.48 4.56e-14 - yes
PS 4 PO:0009025 leaf 143/200 1.55 6.82e-14 - yes
PS 3 PO:0009006 shoot 158/200 1.46 7.44e-14 - yes
PS 5 PO:0009046 flower 154/200 1.48 7.71e-14 - yes
PS 3 PO:0020091 male gametophyte 134/200 1.62 8.43e-14 - yes
PS 5 PO:0000013 cauline leaf 124/200 1.61 6.62e-12 - yes
PS 5 PO:0020039 leaf lamina 128/200 1.55 2.39e-11 - yes
PS 4 PO:0020030 cotyledon 112/200 1.53 9.24e-09 - yes
PS 5 PO:0020038 petiole 112/200 1.47 8.91e-08 - yes
PS 3 PO:0000084 sperm cell 59/200 1.82 8.10e-07 - yes
PS 3 PO:0020097 generative cell 59/200 1.82 8.10e-07 - yes
PG 5 PO:0004507 D bilateral stage 143/200 1.74 8.92e-19 - yes
PG 5 PO:0001078 E expanded cotyledon stage 142/200 1.71 7.25e-18 - yes
PG 5 PO:0001185 C globular stage 140/200 1.71 2.77e-17 - yes
PG 5 PO:0001081 F mature embryo stage 136/200 1.71 1.72e-16 - yes
PG 4 PO:0007631 embryo development stages 145/200 1.61 8.19e-16 - yes
PG 5 PO:0007604 corolla developmental stages 153/200 1.55 8.38e-16 - yes
PG 3 PO:0001170 seed development stages 145/200 1.60 1.28e-15 - yes
PG 4 PO:0007616 4 anthesis 151/200 1.56 1.40e-15 - yes
PG 4 PO:0007600 3 floral organ development stages 153/200 1.50 2.62e-14 - yes
PG 3 PO:0007615 flower development stages 154/200 1.47 1.59e-13 - yes
PG 5 PO:0007133 leaf production 134/200 1.59 3.03e-13 - yes
PG 4 PO:0007112 1 main shoot growth 134/200 1.59 3.09e-13 - yes
PG 3 PO:0007134 A vegetative growth 134/200 1.58 5.68e-13 - yes
PG 4 PO:0001054 4 leaf senescence stage 121/200 1.57 8.47e-11 - yes
PG 3 PO:0001050 leaf development stages 121/200 1.57 8.83e-11 - yes
PG 5 PO:0007605 androecium developmental stages 41/200 1.40 9.30e-03 - yes
KW 0 cellular_component - 80/200 1.64 3.29e-07 - yes
KW 0 ipr013083 - 12/200 3.83 1.83e-05 - no
KW 0 molecular_function - 76/200 1.51 2.36e-05 - no
KW 0 biological_process - 86/200 1.44 2.99e-05 - no
KW 0 ubiquitin - 13/200 2.89 1.88e-04 - no
KW 0 nuclear - 10/200 3.25 2.91e-04 - no
KW 0 complex - 19/200 2.24 3.47e-04 - no
KW 0 finger - 19/200 2.05 1.04e-03 - no
KW 0 chloroplast - 28/200 1.59 5.54e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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