OMAT3P001330 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P116910 0.874367 - AT1G67930 Golgi transport complex protein-related - -
OMAT3P011000 0.872635 - AT3G29320 glucan phosphorylase, putative - -
OMAT3P012260 0.866638 - AT3G47460 ATSMC2 AT3G47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)
OMAT3P110010 0.857668 - AT3G44610 protein kinase family protein - -
OMAT5P110650 0.855652 - AT5G43870 phosphoinositide binding - -
OMAT2P012140 0.847283 - AT2G44060 late embryogenesis abundant family protein / LEA family protein - -
OMAT3P007910 0.846248 - AT3G20790 oxidoreductase family protein - -
OMAT2P107030 0.845756 - AT2G32690 GRP23 (GLYCINE-RICH PROTEIN 23) - -
OMAT2P108170 0.843652 - AT2G36050 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) - -
OMAT3P109840 0.84005 - AT3G43610 tubulin binding - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT5P102060 -0.81365 - AT5G07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) - -
OMAT5P116780 -0.795523 - AT5G62200 embryo-specific protein-related - -
OMAT3P108010 -0.792365 - AT3G24180 catalytic/ glucosylceramidase - -
OMAT2P002270 -0.78742 - AT2G16595 FUNCTIONS IN: molecular_function unknown - -
OMAT5P108910 -0.763993 - AT5G37480,AT5G37485 [AT5G37480]unknown protein, [AT5G37485]other RNA - -
OMAT1P101300 -0.760596 - AT1G04985 unknown protein - -
OMAT3P009370 -0.757682 - AT3G24927 pseudogene of unknown protein - -
OMAT2P007190 -0.757486 - AT2G30530 unknown protein - -
OMAT1P109650 -0.754334 - AT1G30500 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) - -
OMAT4P102300 -0.753262 - AT4G11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) - -

Get whole results

Over-Representation Analysis Result

p-value <= 5.29e-38:20 terms with high significance
5.29e-38 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0006629 lipid metabolic process 16/200 3.68 2.05e-06 - no
B 4 GO:0044255 cellular lipid metabolic process 12/200 4.46 3.58e-06 - no
B 3 GO:0009628 response to abiotic stimulus 20/200 2.70 1.89e-05 - no
B 3 GO:0042221 response to chemical stimulus 26/200 2.28 2.90e-05 - no
B 4 GO:0010033 response to organic substance 18/200 2.69 4.65e-05 - no
B 3 GO:0009719 response to endogenous stimulus 15/200 2.91 6.82e-05 - no
B 4 GO:0005975 carbohydrate metabolic process 15/200 2.88 7.70e-05 - no
B 3 GO:0044281 small molecule metabolic process 21/200 2.34 1.04e-04 - no
B 4 GO:0044262 cellular carbohydrate metabolic process 10/200 3.23 3.06e-04 - no
B 4 GO:0009725 response to hormone stimulus 13/200 2.75 3.14e-04 - no
B 3 GO:0006996 organelle organization 10/200 3.00 5.80e-04 - no
B 3 GO:0009653 anatomical structure morphogenesis 10/200 2.97 6.15e-04 - no
B 4 GO:0044283 small molecule biosynthetic process 12/200 2.64 7.02e-04 - no
B 5 GO:0043436 oxoacid metabolic process 11/200 2.50 1.69e-03 - no
B 3 GO:0048856 anatomical structure development 18/200 2.01 1.70e-03 - no
B 4 GO:0006082 organic acid metabolic process 11/200 2.49 1.73e-03 - no
B 4 GO:0042180 cellular ketone metabolic process 11/200 2.45 1.98e-03 - no
B 3 GO:0006810 transport 19/200 1.85 3.41e-03 - no
B 3 GO:0051234 establishment of localization 19/200 1.85 3.52e-03 - no
C 3 GO:0044464 cell part 147/200 1.61 3.75e-16 - no
C 5 GO:0044434 chloroplast part 21/200 3.79 4.53e-08 - no
C 3 GO:0044424 intracellular part 85/200 1.67 4.91e-08 - no
C 4 GO:0044435 plastid part 21/200 3.69 7.21e-08 - no
C 3 GO:0005622 intracellular 87/200 1.63 8.10e-08 - no
C 3 GO:0016020 membrane 55/200 2.01 8.12e-08 - no
C 3 GO:0044446 intracellular organelle part 36/200 2.51 9.20e-08 - no
C 3 GO:0044422 organelle part 36/200 2.51 9.39e-08 - no
C 4 GO:0044444 cytoplasmic part 63/200 1.81 3.22e-07 - no
C 3 GO:0043229 intracellular organelle 77/200 1.67 3.26e-07 - no
C 3 GO:0048046 apoplast 11/200 5.58 8.11e-07 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 73/200 1.66 9.05e-07 - no
C 3 GO:0043227 membrane-bounded organelle 73/200 1.66 9.10e-07 - no
C 5 GO:0009536 plastid 40/200 2.17 9.16e-07 - no
C 5 GO:0009532 plastid stroma 12/200 4.85 1.43e-06 - no
C 4 GO:0005737 cytoplasm 64/200 1.71 2.17e-06 - no
C 4 GO:0005886 plasma membrane 28/200 2.26 1.76e-05 - no
C 5 GO:0009526 plastid envelope 11/200 4.00 2.35e-05 - no
C 3 GO:0043234 protein complex 18/200 2.75 3.47e-05 - no
C 4 GO:0009579 thylakoid 10/200 4.02 4.63e-05 - no
C 4 GO:0031967 organelle envelope 12/200 2.88 3.15e-04 - no
C 3 GO:0031975 envelope 12/200 2.88 3.15e-04 - no
C 3 GO:0043228 non-membrane-bounded organelle 15/200 2.52 3.52e-04 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 15/200 2.52 3.52e-04 - no
M 3 GO:0016787 hydrolase activity 30/200 1.92 1.91e-04 - no
M 3 GO:0016740 transferase activity 31/200 1.90 1.92e-04 - no
M 5 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 12/200 2.70 5.83e-04 - no
M 4 GO:0016817 hydrolase activity, acting on acid anhydrides 12/200 2.67 6.36e-04 - no
PS 5 PO:0009052 pedicel 177/200 2.18 1.88e-46 - yes
PS 3 PO:0009032 petal 181/200 2.07 2.25e-45 - yes
PS 5 PO:0020039 leaf lamina 176/200 2.14 1.98e-44 - yes
PS 5 PO:0020038 petiole 170/200 2.23 7.62e-44 - yes
PS 3 PO:0009031 sepal 182/200 1.97 1.31e-42 - yes
PS 5 PO:0000013 cauline leaf 169/200 2.19 6.75e-42 - yes
PS 4 PO:0000037 shoot apex 176/200 2.05 2.06e-41 - yes
PS 5 PO:0009027 megasporophyll 173/200 2.06 3.80e-40 - yes
PS 4 PO:0009025 leaf 179/200 1.95 9.15e-40 - yes
PS 4 PO:0009009 embryo 181/200 1.87 2.91e-38 - yes
PS 3 PO:0006001 phyllome 185/200 1.80 4.00e-38 - yes
PS 5 PO:0008034 leaf whorl 179/200 1.90 5.67e-38 - yes
PS 4 PO:0008033 phyllome whorl 179/200 1.90 5.67e-38 - yes
PS 3 PO:0009010 seed 181/200 1.85 2.29e-37 - yes
PS 4 PO:0009026 sporophyll 175/200 1.94 2.56e-37 - yes
PS 4 PO:0009001 fruit 181/200 1.84 5.45e-37 - yes
PS 3 PO:0006342 infructescence 181/200 1.84 5.45e-37 - yes
PS 5 PO:0008037 seedling 173/200 1.96 9.21e-37 - yes
PS 5 PO:0009028 microsporophyll 168/200 2.00 1.28e-35 - yes
PS 5 PO:0009046 flower 183/200 1.76 6.01e-35 - yes
PS 4 PO:0009049 inflorescence 183/200 1.75 1.64e-34 - yes
PS 3 PO:0009006 shoot 185/200 1.70 7.10e-34 - yes
PS 3 PO:0009013 meristem 162/200 2.02 3.39e-33 - yes
PS 4 PO:0020030 cotyledon 154/200 2.10 4.29e-32 - yes
PS 4 PO:0000230 inflorescence meristem 157/200 2.02 3.38e-31 - yes
PS 4 PO:0009047 stem 154/200 1.83 1.98e-24 2.00E-21 yes
PS 3 PO:0020091 male gametophyte 152/200 1.83 5.39e-24 - yes
PS 3 PO:0009005 root 147/200 1.63 6.45e-17 - yes
PS 5 PO:0006035 shoot epidermis 38/200 3.39 7.55e-12 - no
PS 4 PO:0005679 epidermis 40/200 3.23 9.68e-12 - no
PS 3 PO:0009014 dermal tissue 40/200 3.23 9.83e-12 - no
PS 5 PO:0006016 leaf epidermis 37/200 3.33 2.56e-11 - no
PS 5 PO:0000349 epidermal initial 37/200 3.28 3.85e-11 - no
PS 4 PO:0000293 guard cell 36/200 3.35 4.10e-11 - no
PS 4 PO:0004011 initial cell 37/200 3.26 4.63e-11 - no
PS 4 PO:0000351 guard mother cell 36/200 3.33 4.65e-11 - no
PS 3 PO:0004010 meristematic cell 37/200 3.26 4.85e-11 - no
PS 3 PO:0000070 meristemoid 36/200 3.33 4.88e-11 - no
PS 3 PO:0004013 epidermal cell 38/200 3.19 4.94e-11 - no
PG 5 PO:0001081 F mature embryo stage 176/200 2.21 6.08e-47 - yes
PG 5 PO:0001185 C globular stage 178/200 2.17 7.06e-47 - yes
PG 5 PO:0004507 D bilateral stage 176/200 2.14 1.78e-44 - yes
PG 5 PO:0001078 E expanded cotyledon stage 176/200 2.12 6.15e-44 - yes
PG 4 PO:0007631 embryo development stages 180/200 2.00 2.62e-42 - yes
PG 3 PO:0001170 seed development stages 180/200 1.99 5.40e-42 - yes
PG 4 PO:0001054 4 leaf senescence stage 168/200 2.18 3.09e-41 - yes
PG 3 PO:0001050 leaf development stages 168/200 2.18 3.36e-41 - yes
PG 4 PO:0007616 4 anthesis 181/200 1.87 5.29e-38 - yes
PG 5 PO:0007133 leaf production 170/200 2.02 3.33e-37 - yes
PG 4 PO:0007112 1 main shoot growth 170/200 2.02 3.44e-37 - yes
PG 3 PO:0007134 A vegetative growth 170/200 2.01 9.67e-37 - yes
PG 5 PO:0007604 corolla developmental stages 181/200 1.83 1.03e-36 - yes
PG 4 PO:0007600 3 floral organ development stages 182/200 1.79 1.89e-35 - yes
PG 3 PO:0007615 flower development stages 182/200 1.74 1.86e-33 - yes
KW 0 chloroplast - 40/200 2.26 2.86e-07 4.00E-31 no
KW 0 membrane - 52/200 1.95 4.80e-07 - no
KW 0 apoplast - 10/200 5.96 1.14e-06 - no
KW 0 required - 11/200 5.02 2.39e-06 - no
KW 0 process - 41/200 2.00 5.02e-06 - yes
KW 0 envelope - 10/200 4.38 2.13e-05 - no
KW 0 specific - 12/200 3.51 4.45e-05 - no
KW 0 plasma - 25/200 2.18 8.36e-05 - no
KW 0 transport - 22/200 2.26 1.22e-04 - no
KW 0 hydrolase - 18/200 2.47 1.45e-04 - no
KW 0 transporter - 17/200 2.45 2.33e-04 - no
KW 0 processes - 10/200 3.30 2.59e-04 - no
KW 0 biosynthetic - 17/200 2.38 3.24e-04 - no
KW 0 complex - 19/200 2.24 3.47e-04 - no
KW 0 alpha - 17/200 2.33 4.14e-04 - no
KW 0 groups - 10/200 3.06 4.84e-04 - no
KW 0 metabolic - 23/200 2.00 5.28e-04 - yes
KW 0 transferring - 10/200 3.00 5.71e-04 - no
KW 0 catalytic - 21/200 2.07 5.72e-04 - yes
KW 0 region - 26/200 1.80 1.27e-03 - no
KW 0 encodes - 40/200 1.57 1.38e-03 - no
KW 0 stimulus - 11/200 2.55 1.41e-03 - no
KW 0 terminal - 32/200 1.66 1.57e-03 - no
KW 0 stress - 11/200 2.34 2.84e-03 - no
KW 0 transferase - 12/200 1.96 9.10e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page