OMAT3P014510 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT4P111560 0.990611 - AT4G38100 unknown protein - -
OMAT3P106450 0.989848 - AT3G19508 unknown protein - -
OMAT1P014600 0.989543 - AT1G52930 brix domain-containing protein - -
OMAT4P109010 0.98945 - AT4G31810 enoyl-CoA hydratase/isomerase family protein - -
OMAT3P000840 0.985589 - AtsnoR78-2,AtsnoR78-1 [AtsnoR78-2]AtsnoR78-2, [AtsnoR78-1]AtsnoR78-1 - -
OMAT2P009860 0.985501 - AT2G37990 ribosome biogenesis regulatory protein (RRS1) family protein - -
OMAT1P105460 0.985174 - AtsnoR34 AtsnoR34 - -
OMAT3P015980 0.984675 - - - AT3G57150 NAP57 (Arabidopsis thaliana homologue of NAP57)
OMAT1P014170 0.984142 - AT1G51380 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative - -
OMAT1P117790 0.984107 - AT1G70350 unknown protein - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT4P104230 -0.683153 - AT4G17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) - -
OMAT2P002180 -0.668203 - AT2G16050 FUNCTIONS IN: molecular_function unknown - -
OMAT3P112910 -0.662218 - AT3G53990 universal stress protein (USP) family protein - -
OMAT3P105790 -0.662055 - - - AT3G17050 transposable element gene
OMAT5P019730 -0.66167 - AT5G64240 AtMC3 (metacaspase 3) - -
OMAT3P000660 -0.660823 - AT3G02470,AT3G02468 [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) - -
OMAT5P018380 -0.657042 - AT5G60360 AALP (Arabidopsis aleurain-like protease) - -
OMAT1P108460 -0.654144 - AT1G27100 FUNCTIONS IN: molecular_function unknown - -
OMAT5P019570 -0.644094 - AT5G63800 MUM2 (MUCILAGE-MODIFIED 2) - -
OMAT5P111240 -0.638609 - AT5G45350 proline-rich family protein - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.32e-10:20 terms with high significance
1.32e-10 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0042254 ribosome biogenesis 24/204 18.37 9.77e-25 - no
B 3 GO:0022613 ribonucleoprotein complex biogenesis 24/204 17.78 2.22e-24 - no
B 5 GO:0006364 rRNA processing 15/204 23.51 3.66e-18 - no
B 5 GO:0006396 RNA processing 23/204 10.19 9.37e-18 - no
B 5 GO:0009451 RNA modification 14/204 18.11 2.21e-15 - no
B 4 GO:0010467 gene expression 48/204 2.31 8.66e-09 - no
B 5 GO:0016070 RNA metabolic process 26/204 3.00 1.82e-07 - no
B 5 GO:0006412 translation 21/204 2.84 5.65e-06 - no
B 5 GO:0090304 nucleic acid metabolic process 30/204 1.96 1.39e-04 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 31/204 1.80 4.81e-04 - no
B 4 GO:0044260 cellular macromolecule metabolic process 52/204 1.45 1.77e-03 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 32/204 1.61 2.53e-03 - no
B 3 GO:0006807 nitrogen compound metabolic process 32/204 1.58 3.44e-03 - no
B 3 GO:0043170 macromolecule metabolic process 53/204 1.34 7.89e-03 - no
C 3 GO:0030529 ribonucleoprotein complex 31/204 8.71 3.35e-21 - no
C 3 GO:0043228 non-membrane-bounded organelle 35/204 5.76 7.57e-18 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 35/204 5.76 7.57e-18 - no
C 5 GO:0005730 nucleolus 18/204 10.30 1.87e-14 - no
C 4 GO:0070013 intracellular organelle lumen 21/204 7.59 9.05e-14 - no
C 3 GO:0043233 organelle lumen 21/204 7.57 9.46e-14 - no
C 3 GO:0005622 intracellular 102/204 1.88 2.96e-13 - no
C 3 GO:0044424 intracellular part 99/204 1.90 3.84e-13 - no
C 5 GO:0031981 nuclear lumen 18/204 7.30 8.27e-12 - no
C 3 GO:0044446 intracellular organelle part 42/204 2.87 1.28e-10 - no
C 3 GO:0044422 organelle part 42/204 2.87 1.32e-10 - no
C 4 GO:0044428 nuclear part 19/204 5.60 2.68e-10 - no
C 4 GO:0005840 ribosome 16/204 6.12 1.43e-09 - no
C 3 GO:0043229 intracellular organelle 84/204 1.78 2.67e-09 - no
C 4 GO:0033279 ribosomal subunit 12/204 7.25 1.45e-08 - no
C 5 GO:0022626 cytosolic ribosome 11/204 5.86 4.81e-07 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 72/204 1.61 4.39e-06 - no
C 3 GO:0043227 membrane-bounded organelle 72/204 1.61 4.41e-06 - no
C 4 GO:0005737 cytoplasm 62/204 1.62 1.92e-05 - no
C 4 GO:0044444 cytoplasmic part 58/204 1.64 2.99e-05 - no
C 5 GO:0005739 mitochondrion 18/204 2.76 3.38e-05 - no
C 5 GO:0005634 nucleus 32/204 2.01 5.31e-05 - no
C 5 GO:0005829 cytosol 11/204 2.61 1.19e-03 - no
C 3 GO:0044464 cell part 110/204 1.18 7.85e-03 - yes
M 3 GO:0003735 structural constituent of ribosome 16/204 7.25 1.10e-10 - no
M 4 GO:0003723 RNA binding 17/204 2.40 2.92e-04 - no
M 3 GO:0003676 nucleic acid binding 36/204 1.49 5.59e-03 - no
PS 4 PO:0000037 shoot apex 126/204 1.44 2.33e-08 - yes
PS 5 PO:0020038 petiole 114/204 1.47 8.13e-08 - yes
PS 3 PO:0009005 root 126/204 1.37 5.01e-07 - yes
PS 5 PO:0009052 pedicel 116/204 1.40 1.04e-06 - yes
PS 5 PO:0020039 leaf lamina 113/204 1.34 1.60e-05 - yes
PS 4 PO:0009025 leaf 122/204 1.30 2.67e-05 - yes
PS 5 PO:0009028 microsporophyll 113/204 1.32 3.94e-05 - yes
PS 5 PO:0000013 cauline leaf 105/204 1.33 7.20e-05 - yes
PS 4 PO:0009026 sporophyll 117/204 1.27 1.50e-04 - yes
PS 4 PO:0009047 stem 111/204 1.29 1.64e-04 - yes
PS 3 PO:0009032 petal 114/204 1.28 2.03e-04 - yes
PS 4 PO:0009009 embryo 123/204 1.25 2.22e-04 - yes
PS 5 PO:0009027 megasporophyll 110/204 1.28 2.23e-04 - yes
PS 3 PO:0009010 seed 124/204 1.24 2.50e-04 - yes
PS 5 PO:0008037 seedling 114/204 1.27 2.86e-04 - yes
PS 3 PO:0009031 sepal 118/204 1.25 3.18e-04 - yes
PS 4 PO:0009001 fruit 124/204 1.24 3.27e-04 - yes
PS 3 PO:0006342 infructescence 124/204 1.24 3.27e-04 - yes
PS 5 PO:0008034 leaf whorl 118/204 1.23 8.51e-04 - yes
PS 4 PO:0008033 phyllome whorl 118/204 1.23 8.51e-04 - yes
PS 3 PO:0006001 phyllome 126/204 1.20 9.96e-04 - yes
PS 4 PO:0020030 cotyledon 95/204 1.27 1.52e-03 - yes
PS 3 PO:0009013 meristem 102/204 1.24 1.77e-03 - yes
PS 4 PO:0000230 inflorescence meristem 99/204 1.25 1.93e-03 - yes
PS 5 PO:0009046 flower 126/204 1.19 1.99e-03 - yes
PS 3 PO:0009006 shoot 130/204 1.17 2.51e-03 - yes
PS 4 PO:0009049 inflorescence 126/204 1.18 2.63e-03 - yes
PG 5 PO:0001081 F mature embryo stage 121/204 1.49 5.57e-09 - yes
PG 5 PO:0001078 E expanded cotyledon stage 122/204 1.44 4.58e-08 - yes
PG 5 PO:0004507 D bilateral stage 121/204 1.44 5.98e-08 - yes
PG 4 PO:0007631 embryo development stages 123/204 1.34 4.17e-06 - yes
PG 3 PO:0001170 seed development stages 123/204 1.33 5.42e-06 - yes
PG 3 PO:0007134 A vegetative growth 117/204 1.35 5.79e-06 - yes
PG 5 PO:0001185 C globular stage 114/204 1.36 6.68e-06 - yes
PG 5 PO:0007133 leaf production 115/204 1.34 1.39e-05 - yes
PG 4 PO:0007112 1 main shoot growth 115/204 1.34 1.41e-05 - yes
PG 4 PO:0001054 4 leaf senescence stage 105/204 1.34 5.87e-05 - yes
PG 3 PO:0001050 leaf development stages 105/204 1.34 6.02e-05 - yes
PG 5 PO:0007604 corolla developmental stages 125/204 1.24 2.36e-04 - yes
PG 4 PO:0007600 3 floral organ development stages 126/204 1.21 7.19e-04 - yes
PG 4 PO:0007616 4 anthesis 119/204 1.20 1.89e-03 - yes
PG 3 PO:0007615 flower development stages 126/204 1.18 2.73e-03 - yes
KW 0 nucleolus - 18/204 12.98 2.64e-16 - no
KW 0 ribosomal - 24/204 7.79 1.03e-15 - no
KW 0 ribosome - 21/204 7.80 5.25e-14 - no
KW 0 translation - 23/204 4.55 3.28e-10 - no
KW 0 processing - 12/204 8.29 2.90e-09 - no
KW 0 constituent - 16/204 5.60 5.47e-09 - no
KW 0 eukaryotic - 12/204 5.98 1.36e-07 - no
KW 0 structural - 16/204 4.47 1.40e-07 - no
KW 0 biogenesis - 10/204 7.21 1.72e-07 - no
KW 0 cytosolic - 11/204 5.04 2.34e-06 - no
KW 0 mitochondrial - 11/204 4.78 3.98e-06 - no
KW 0 subunit - 21/204 2.81 6.68e-06 - no
KW 0 mitochondrion - 15/204 2.68 1.75e-04 - no
KW 0 motif - 13/204 2.62 5.04e-04 - no
KW 0 complex - 18/204 2.08 1.14e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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