OMAT3P016630 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT5P114150 0.909775 - AT5G54380 THE1 (THESEUS1) - -
OMAT2P012380 0.895365 - AT2G44500 unknown protein - -
OMAT3P002950 0.89308 - AT3G08600 unknown protein - -
OMAT5P108700 0.88421 - AT5G35750 AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) - -
OMAT3P015040 0.879491 - AT3G54810 zinc finger (GATA type) family protein - -
OMAT4P100805 0.873343 - AT4G02130 GATL6 - -
OMAT2P109480 0.87172 - AT2G39180 CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2) - -
OMAT1P103180 0.865656 - AT1G10020 unknown protein - -
OMAT4P102560 0.86242 - AT4G12420 SKU5 - -
OMAT1P022900 0.86197 - AT1G77640 AP2 domain-containing transcription factor, putative - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT3P001090 -0.771034 - AT3G03340 UNE6 (unfertilized embryo sac 6) AT3G03341 unknown protein
OMAT4P008190 -0.748693 - AT4G26000 PEP (PEPPER) - -
OMAT1P022050 -0.731502 - AT1G75400 protein binding / zinc ion binding - -
OMAT5P020960 -0.729373 - AT5G67330 ATNRAMP4 - -
OMAT3P008700 -0.724468 - AT3G22990 LFR (LEAF AND FLOWER RELATED) - -
OMAT2P107920 -0.724282 - AT2G35345 unknown protein - -
OMAT3P015340 -0.71667 - AT3G55520 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative - -
OMAT3P101010 -0.711337 - AT3G03341 unknown protein - -
OMAT4P004290 -0.708942 - AT4G15410 PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) - -
OMAT4P009710 -0.708746 - AT4G29490 aminopeptidase/ manganese ion binding - -

Get whole results

Over-Representation Analysis Result

p-value <= 2.57e-36:20 terms with high significance
2.57e-36 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0065008 regulation of biological quality 18/200 4.82 8.40e-09 - no
B 3 GO:0016049 cell growth 11/200 6.88 8.64e-08 - no
B 5 GO:0032535 regulation of cellular component size 11/200 6.63 1.29e-07 - no
B 4 GO:0090066 regulation of anatomical structure size 11/200 6.63 1.29e-07 - no
B 5 GO:0006796 phosphate metabolic process 22/200 3.31 2.52e-07 - yes
B 4 GO:0006793 phosphorus metabolic process 22/200 3.31 2.56e-07 - yes
B 3 GO:0009719 response to endogenous stimulus 17/200 3.30 4.89e-06 - no
B 5 GO:0006464 protein modification process 26/200 2.50 5.76e-06 - yes
B 3 GO:0023033 signaling pathway 13/200 3.85 8.83e-06 - no
B 4 GO:0010033 response to organic substance 19/200 2.84 1.41e-05 - no
B 4 GO:0009725 response to hormone stimulus 15/200 3.17 2.45e-05 - no
B 4 GO:0043412 macromolecule modification 26/200 2.29 2.64e-05 - yes
B 3 GO:0048869 cellular developmental process 10/200 3.60 1.22e-04 - no
B 3 GO:0009653 anatomical structure morphogenesis 11/200 3.27 1.59e-04 - no
B 3 GO:0042221 response to chemical stimulus 24/200 2.10 1.95e-04 - no
B 3 GO:0009628 response to abiotic stimulus 17/200 2.29 4.97e-04 - no
B 4 GO:0005975 carbohydrate metabolic process 13/200 2.50 8.12e-04 - no
B 3 GO:0050794 regulation of cellular process 25/200 1.64 5.39e-03 - no
C 4 GO:0005886 plasma membrane 43/200 3.47 1.31e-13 3.64E-21 yes
C 3 GO:0016020 membrane 59/200 2.15 1.66e-09 3.64E-21 yes
C 3 GO:0044464 cell part 132/200 1.44 2.43e-09 - yes
C 4 GO:0005618 cell wall 17/200 5.12 7.97e-09 - no
C 3 GO:0030312 external encapsulating structure 17/200 5.08 8.90e-09 - no
C 5 GO:0009505 plant-type cell wall 11/200 6.98 7.33e-08 - no
C 5 GO:0005773 vacuole 16/200 4.63 8.43e-08 - no
C 4 GO:0005737 cytoplasm 55/200 1.47 8.61e-04 - no
C 4 GO:0044444 cytoplasmic part 50/200 1.44 2.36e-03 - no
C 4 GO:0031224 intrinsic to membrane 11/200 2.05 8.07e-03 - no
M 3 GO:0016740 transferase activity 43/200 2.63 1.16e-09 - yes
M 5 GO:0016301 kinase activity 27/200 3.36 1.00e-08 - yes
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 28/200 3.05 4.27e-08 - yes
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 22/200 3.54 7.66e-08 - yes
M 5 GO:0016758 transferase activity, transferring hexosyl groups 10/200 5.64 1.96e-06 - no
M 4 GO:0016757 transferase activity, transferring glycosyl groups 11/200 3.77 4.17e-05 - no
M 4 GO:0017076 purine nucleotide binding 20/200 1.93 1.76e-03 - yes
M 5 GO:0032555 purine ribonucleotide binding 19/200 1.94 2.09e-03 - yes
M 4 GO:0032553 ribonucleotide binding 19/200 1.94 2.09e-03 - yes
M 3 GO:0000166 nucleotide binding 23/200 1.74 3.40e-03 - yes
M 5 GO:0030554 adenyl nucleotide binding 17/200 1.88 4.43e-03 - yes
M 4 GO:0001883 purine nucleoside binding 17/200 1.88 4.43e-03 - yes
M 3 GO:0001882 nucleoside binding 17/200 1.87 4.55e-03 - yes
PS 5 PO:0020038 petiole 175/200 2.30 5.49e-49 - yes
PS 5 PO:0020039 leaf lamina 178/200 2.16 1.50e-46 - yes
PS 4 PO:0020030 cotyledon 168/200 2.29 2.71e-44 - yes
PS 5 PO:0000013 cauline leaf 169/200 2.19 6.75e-42 - yes
PS 4 PO:0009025 leaf 180/200 1.96 8.47e-41 - yes
PS 4 PO:0009026 sporophyll 178/200 1.98 2.87e-40 - yes
PS 5 PO:0009028 microsporophyll 172/200 2.05 2.85e-39 - yes
PS 5 PO:0009027 megasporophyll 172/200 2.05 3.44e-39 - yes
PS 5 PO:0008037 seedling 175/200 1.98 1.17e-38 - yes
PS 4 PO:0000037 shoot apex 173/200 2.01 1.75e-38 - yes
PS 3 PO:0009013 meristem 168/200 2.09 2.21e-38 - yes
PS 4 PO:0000230 inflorescence meristem 165/200 2.12 7.69e-38 - yes
PS 5 PO:0008034 leaf whorl 178/200 1.89 5.53e-37 - yes
PS 4 PO:0008033 phyllome whorl 178/200 1.89 5.53e-37 - yes
PS 3 PO:0009032 petal 172/200 1.96 2.57e-36 - yes
PS 3 PO:0006001 phyllome 183/200 1.78 5.36e-36 - yes
PS 3 PO:0009005 root 173/200 1.92 1.81e-35 - yes
PS 4 PO:0009047 stem 168/200 1.99 3.11e-35 - yes
PS 3 PO:0009031 sepal 174/200 1.88 1.25e-34 - yes
PS 5 PO:0009052 pedicel 164/200 2.02 3.97e-34 - yes
PS 4 PO:0009009 embryo 176/200 1.82 2.07e-33 - yes
PS 4 PO:0009001 fruit 177/200 1.80 4.01e-33 - yes
PS 3 PO:0006342 infructescence 177/200 1.80 4.01e-33 - yes
PS 3 PO:0009010 seed 176/200 1.80 1.45e-32 - yes
PS 5 PO:0009046 flower 180/200 1.73 5.22e-32 - yes
PS 3 PO:0009006 shoot 183/200 1.69 7.47e-32 - yes
PS 4 PO:0009049 inflorescence 180/200 1.72 1.37e-31 - yes
PS 3 PO:0020091 male gametophyte 159/200 1.92 5.81e-29 - no
PS 5 PO:0006016 leaf epidermis 19/200 1.71 8.22e-03 - no
PS 4 PO:0006345 pollen tube 41/200 1.41 8.53e-03 - no
PS 3 PO:0004013 epidermal cell 20/200 1.68 8.57e-03 - no
PS 5 PO:0006035 shoot epidermis 19/200 1.70 8.84e-03 - no
PG 3 PO:0007134 A vegetative growth 176/200 2.08 1.67e-42 - yes
PG 5 PO:0007133 leaf production 175/200 2.08 5.54e-42 - yes
PG 4 PO:0007112 1 main shoot growth 175/200 2.08 5.73e-42 - yes
PG 4 PO:0001054 4 leaf senescence stage 168/200 2.18 3.09e-41 - yes
PG 3 PO:0001050 leaf development stages 168/200 2.18 3.36e-41 - yes
PG 5 PO:0001185 C globular stage 166/200 2.02 2.92e-35 - yes
PG 3 PO:0001170 seed development stages 173/200 1.91 3.95e-35 - yes
PG 4 PO:0007631 embryo development stages 172/200 1.91 1.62e-34 - yes
PG 5 PO:0004507 D bilateral stage 165/200 2.00 3.66e-34 - yes
PG 5 PO:0001078 E expanded cotyledon stage 165/200 1.99 1.09e-33 - yes
PG 5 PO:0007604 corolla developmental stages 177/200 1.79 7.36e-33 - yes
PG 4 PO:0007616 4 anthesis 175/200 1.80 2.90e-32 - yes
PG 5 PO:0001081 F mature embryo stage 160/200 2.01 3.53e-32 - yes
PG 4 PO:0007600 3 floral organ development stages 178/200 1.75 1.31e-31 - yes
PG 3 PO:0007615 flower development stages 179/200 1.71 1.30e-30 - yes
KW 0 plasma - 41/200 3.58 1.89e-13 3.64E-21 yes
KW 0 ipr001245 - 15/200 5.88 7.35e-09 - no
KW 0 membrane - 56/200 2.10 1.15e-08 3.64E-21 yes
KW 0 ipr000719 - 23/200 3.69 1.89e-08 - yes
KW 0 tyrosine - 17/200 4.79 2.20e-08 2.00E-17 no
KW 0 ipr011009 - 23/200 3.56 3.78e-08 - yes
KW 0 phosphorylation - 22/200 3.58 6.44e-08 - yes
KW 0 ipr017441 - 18/200 4.19 7.59e-08 - yes
KW 0 vacuole - 15/200 4.76 1.36e-07 - no
KW 0 threonine - 24/200 3.20 1.50e-07 2.00E-71 yes
KW 0 kinase - 29/200 2.75 2.45e-07 0 yes
KW 0 ipr008271 - 17/200 3.48 2.32e-06 - yes
KW 0 active - 23/200 2.81 2.59e-06 - yes
KW 0 terminal - 40/200 2.08 2.70e-06 - no
KW 0 serine - 24/200 2.69 3.44e-06 2.00E-71 yes
KW 0 amino - 23/200 2.67 6.12e-06 6.00E-30 yes
KW 0 ipr002290 - 12/200 4.07 9.58e-06 - no
KW 0 ipr017442 - 15/200 2.85 8.79e-05 - yes
KW 0 signaling - 12/200 3.22 1.05e-04 - no
KW 0 glycosyl - 12/200 2.81 3.91e-04 - no
KW 0 function - 28/200 1.80 8.94e-04 7.00E-59 no
KW 0 carbohydrate - 10/200 2.55 2.10e-03 - no
KW 0 subgroup - 10/200 2.46 2.74e-03 1.00E-56 no
KW 0 encodes - 38/200 1.49 4.43e-03 - no
KW 0 response - 28/200 1.56 6.81e-03 - no
KW 0 receptor - 10/200 2.10 8.73e-03 7.00E-74 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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