OMAT4P005770 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P003000 0.958585 - AT1G08910 EMB3001 (embryo defective 3001) - -
OMAT1P001550 0.957345 - AT1G04945 FUNCTIONS IN: molecular_function unknown - -
OMAT5P018960 0.95594 - AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein - -
OMAT3P017240 0.955814 - AT3G60880 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) - -
OMAT3P018140 0.955453 - AT3G63400 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein - -
OMAT5P005330 0.955098 - AT5G15570 FUNCTIONS IN: molecular_function unknown - -
OMAT5P116720 0.954765 - AT5G62050 OXA1 - -
OMAT3P002710 0.953508 - AT3G07630 ADT2 (arogenate dehydratase 2) - -
OMAT5P010600 0.952811 - AT5G39350 pentatricopeptide (PPR) repeat-containing protein - -
OMAT3P003460 0.951794 - AT3G09970 calcineurin-like phosphoesterase family protein - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P010480 -0.869887 - AT1G29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) - -
OMAT3P000660 -0.858568 - AT3G02470,AT3G02468 [AT3G02470]SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE), [AT3G02468]CPuORF9 (Conserved peptide upstream open reading frame 9) - -
OMAT2P002950 -0.846562 - - - AT2G18540 cupin family protein
OMAT3P105310 -0.835776 - AT3G15810 unknown protein - -
OMAT2P107590 -0.81725 - AT2G34420 LHB1B2 - -
OMAT5P100430 -0.809187 - AT5G02380 MT2B (METALLOTHIONEIN 2B) AT5G02370 kinesin motor protein-related
OMAT3P012300 -0.803849 - AT3G47540 chitinase, putative - -
OMAT2P105960 -0.80112 - AT2G29390 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) - -
OMAT3P000900 -0.798375 - AT3G02900 unknown protein - -
OMAT3P112715 -0.797358 - AT3G53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) - -

Get whole results

Over-Representation Analysis Result

p-value <= 2.86e-19:20 terms with high significance
2.86e-19 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 5 GO:0006396 RNA processing 10/200 4.52 1.58e-05 - no
B 5 GO:0016070 RNA metabolic process 16/200 1.88 5.39e-03 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 30/200 1.54 6.35e-03 - no
B 3 GO:0006807 nitrogen compound metabolic process 30/200 1.51 8.35e-03 - no
B 5 GO:0090304 nucleic acid metabolic process 24/200 1.60 8.50e-03 - no
B 3 GO:0044281 small molecule metabolic process 16/200 1.78 9.08e-03 - no
C 4 GO:0070013 intracellular organelle lumen 17/200 6.27 3.34e-10 - no
C 3 GO:0043233 organelle lumen 17/200 6.25 3.46e-10 - no
C 5 GO:0005739 mitochondrion 25/200 3.91 1.52e-09 - no
C 3 GO:0043229 intracellular organelle 81/200 1.75 1.22e-08 - no
C 3 GO:0005622 intracellular 89/200 1.67 1.59e-08 - no
C 5 GO:0031981 nuclear lumen 14/200 5.79 2.55e-08 - no
C 3 GO:0044424 intracellular part 85/200 1.67 4.91e-08 - no
C 4 GO:0044428 nuclear part 16/200 4.81 4.95e-08 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 75/200 1.71 1.89e-07 - no
C 3 GO:0043227 membrane-bounded organelle 75/200 1.71 1.91e-07 - no
C 5 GO:0005730 nucleolus 10/200 5.83 1.40e-06 - no
C 3 GO:0044446 intracellular organelle part 31/200 2.16 1.59e-05 - no
C 3 GO:0044422 organelle part 31/200 2.16 1.62e-05 - no
C 3 GO:0043228 non-membrane-bounded organelle 17/200 2.85 3.39e-05 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 17/200 2.85 3.39e-05 - no
C 5 GO:0005634 nucleus 32/200 2.05 3.55e-05 - no
C 4 GO:0005737 cytoplasm 60/200 1.60 3.89e-05 - no
C 4 GO:0044444 cytoplasmic part 56/200 1.61 6.33e-05 - no
C 3 GO:0043234 protein complex 16/200 2.45 3.35e-04 - no
M 4 GO:0003723 RNA binding 14/200 2.02 4.39e-03 1.00E-08 no
PS 4 PO:0000037 shoot apex 162/200 1.88 4.32e-29 - no
PS 5 PO:0009052 pedicel 153/200 1.88 1.00e-25 - no
PS 3 PO:0009010 seed 162/200 1.66 1.10e-21 - no
PS 4 PO:0009001 fruit 162/200 1.65 2.14e-21 - no
PS 3 PO:0006342 infructescence 162/200 1.65 2.14e-21 - no
PS 4 PO:0009047 stem 149/200 1.77 3.42e-21 - no
PS 3 PO:0009031 sepal 156/200 1.69 6.46e-21 - no
PS 5 PO:0008034 leaf whorl 157/200 1.66 1.87e-20 - no
PS 4 PO:0008033 phyllome whorl 157/200 1.66 1.87e-20 - no
PS 4 PO:0009009 embryo 158/200 1.64 8.62e-20 - no
PS 5 PO:0020038 petiole 138/200 1.81 1.69e-19 - no
PS 5 PO:0020039 leaf lamina 144/200 1.75 2.55e-19 - no
PS 4 PO:0009025 leaf 153/200 1.66 2.66e-19 - no
PS 5 PO:0008037 seedling 149/200 1.69 5.80e-19 - no
PS 3 PO:0009005 root 150/200 1.67 1.32e-18 - no
PS 3 PO:0009032 petal 146/200 1.67 1.36e-17 - no
PS 3 PO:0006001 phyllome 159/200 1.55 2.85e-17 - no
PS 3 PO:0009006 shoot 164/200 1.51 3.29e-17 - no
PS 4 PO:0009049 inflorescence 160/200 1.53 8.52e-17 - no
PS 5 PO:0009046 flower 159/200 1.53 1.57e-16 - no
PS 4 PO:0009026 sporophyll 145/200 1.61 7.75e-16 - no
PS 5 PO:0000013 cauline leaf 132/200 1.71 1.22e-15 - no
PS 5 PO:0009028 microsporophyll 138/200 1.65 2.64e-15 - no
PS 5 PO:0009027 megasporophyll 138/200 1.64 2.97e-15 - no
PS 3 PO:0009013 meristem 134/200 1.67 4.64e-15 - no
PS 4 PO:0000230 inflorescence meristem 131/200 1.69 6.47e-15 - no
PS 4 PO:0020030 cotyledon 121/200 1.65 2.43e-12 - no
PS 3 PO:0020091 male gametophyte 115/200 1.39 1.70e-06 - no
PS 3 PO:0000084 sperm cell 57/200 1.76 4.01e-06 - no
PS 3 PO:0020097 generative cell 57/200 1.76 4.01e-06 - no
PG 5 PO:0001081 F mature embryo stage 156/200 1.96 4.33e-29 - no
PG 5 PO:0001078 E expanded cotyledon stage 159/200 1.92 6.52e-29 - no
PG 5 PO:0004507 D bilateral stage 157/200 1.91 7.35e-28 - no
PG 4 PO:0007631 embryo development stages 160/200 1.78 5.60e-25 - no
PG 3 PO:0001170 seed development stages 160/200 1.77 9.85e-25 - no
PG 5 PO:0001185 C globular stage 148/200 1.80 5.93e-22 - no
PG 5 PO:0007604 corolla developmental stages 159/200 1.61 2.86e-19 - no
PG 4 PO:0007600 3 floral organ development stages 159/200 1.56 1.31e-17 - no
PG 4 PO:0007616 4 anthesis 154/200 1.59 3.14e-17 - no
PG 5 PO:0007133 leaf production 140/200 1.66 3.37e-16 - no
PG 4 PO:0007112 1 main shoot growth 140/200 1.66 3.44e-16 - no
PG 3 PO:0007615 flower development stages 159/200 1.52 3.47e-16 - no
PG 3 PO:0007134 A vegetative growth 140/200 1.65 6.79e-16 - no
PG 4 PO:0001054 4 leaf senescence stage 131/200 1.70 2.59e-15 - no
PG 3 PO:0001050 leaf development stages 131/200 1.70 2.72e-15 - no
KW 0 mitochondrion - 22/200 4.01 8.07e-09 - no
KW 0 complex - 27/200 3.19 2.96e-08 - no
KW 0 mitochondrial - 12/200 5.32 5.14e-07 - no
KW 0 nucleotide - 20/200 3.14 1.87e-06 - yes
KW 0 repeat - 30/200 2.31 5.86e-06 0 yes
KW 0 ubiquitin - 14/200 3.12 5.15e-05 - no
KW 0 helical - 11/200 3.65 5.69e-05 - no
KW 0 translation - 14/200 2.83 1.52e-04 - no
KW 0 ligase - 12/200 3.07 1.68e-04 - no
KW 0 ribosomal - 10/200 3.31 2.50e-04 - no
KW 0 region - 28/200 1.94 2.61e-04 - yes
KW 0 subunit - 17/200 2.32 4.39e-04 7.00E-08 no
KW 0 nucleic - 15/200 2.29 9.44e-04 - no
KW 0 biological_process - 79/200 1.32 1.41e-03 - yes
KW 0 motif - 11/200 2.26 3.77e-03 - no
KW 0 intracellular - 11/200 2.13 6.01e-03 - no
KW 0 containing - 26/200 1.56 8.82e-03 1.00E-138 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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