OMAT4P110690 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P021825 0.84893 - - - AT1G74840 myb family transcription factor
OMAT5P006940 0.843452 - AT5G20050 protein kinase family protein - -
OMAT2P110170 0.830208 - AT2G40860 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein - -
OMAT2P013370 0.82823 - AT2G46790 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9) - -
OMAT5P115250 0.826414 - AT5G57890 anthranilate synthase beta subunit, putative - -
OMAT3P009480 0.824705 - AT3G25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) - -
OMAT1P110510 0.822346 - AT1G33475 INVOLVED IN: transport, vesicle-mediated transport - -
OMAT4P104540 0.81806 - AT4G18230 FUNCTIONS IN: molecular_function unknown - -
OMAT3P114675 0.817773 - AT3G59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) - -
OMAT4P106140 0.805918 - AT4G23190 CRK11 (CYSTEINE-RICH RLK11) - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
OMAT1P002090 -0.768613 - AT1G06500 unknown protein - -
OMAT1P012920 -0.73925 - AT1G47250 PAF2 - -
OMAT2P007060 -0.734951 - AT2G30100 ubiquitin family protein - -
OMAT3P001670 -0.732025 - AT3G04830 binding - -
OMAT2P010100 -0.717854 - AT2G38550 unknown protein - -
OMAT4P010370 -0.710323 - AT4G31300 PBA1 - -
OMAT4P009520 -0.706691 - AT4G29040 RPT2a (regulatory particle AAA-ATPase 2a) - -
OMAT1P012250 -0.701625 - AT1G35620 ATPDIL5-2 (PDI-LIKE 5-2) - -
OMAT5P020150 -0.698411 - AT5G65270 AtRABA4a (Arabidopsis Rab GTPase homolog A4a) - -
OMAT3P104160 -0.695594 - AT3G12650 unknown protein - -

Get whole results

Over-Representation Analysis Result

p-value <= 3.07e-16:20 terms with high significance
3.07e-16 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0042221 response to chemical stimulus 32/200 2.81 3.68e-08 - no
B 3 GO:0050794 regulation of cellular process 38/200 2.49 4.96e-08 - no
B 3 GO:0006950 response to stress 33/200 2.66 8.11e-08 - no
B 3 GO:0050789 regulation of biological process 40/200 2.31 1.65e-07 - no
B 3 GO:0009628 response to abiotic stimulus 23/200 3.10 4.55e-07 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 27/200 2.74 6.47e-07 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 27/200 2.69 9.13e-07 - no
B 4 GO:0009889 regulation of biosynthetic process 27/200 2.69 9.46e-07 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 27/200 2.69 9.46e-07 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 27/200 2.67 1.11e-06 - no
B 5 GO:0006350 transcription 27/200 2.65 1.29e-06 - no
B 5 GO:0051252 regulation of RNA metabolic process 18/200 3.44 1.47e-06 - no
B 4 GO:0080090 regulation of primary metabolic process 27/200 2.56 2.36e-06 - no
B 5 GO:0032774 RNA biosynthetic process 18/200 3.29 2.92e-06 - no
B 5 GO:0010468 regulation of gene expression 27/200 2.53 2.97e-06 - no
B 4 GO:0031323 regulation of cellular metabolic process 27/200 2.50 3.91e-06 - no
B 4 GO:0010033 response to organic substance 20/200 2.99 4.04e-06 - no
B 4 GO:0060255 regulation of macromolecule metabolic process 27/200 2.47 4.92e-06 - no
B 4 GO:0006970 response to osmotic stress 11/200 4.39 9.49e-06 - no
B 3 GO:0006807 nitrogen compound metabolic process 39/200 1.97 1.32e-05 - no
B 3 GO:0019222 regulation of metabolic process 27/200 2.29 1.88e-05 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 38/200 1.95 1.98e-05 - no
B 3 GO:0051707 response to other organism 12/200 3.58 3.64e-05 - no
B 5 GO:0090304 nucleic acid metabolic process 31/200 2.06 4.00e-05 - no
B 5 GO:0016070 RNA metabolic process 21/200 2.47 4.69e-05 - no
B 4 GO:0006952 defense response 14/200 3.08 5.97e-05 - no
B 3 GO:0009719 response to endogenous stimulus 15/200 2.91 6.82e-05 - no
B 3 GO:0009607 response to biotic stimulus 12/200 3.32 7.86e-05 - no
B 3 GO:0044237 cellular metabolic process 70/200 1.48 9.86e-05 - no
B 5 GO:0006796 phosphate metabolic process 17/200 2.56 1.33e-04 - no
B 4 GO:0006793 phosphorus metabolic process 17/200 2.56 1.35e-04 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 32/200 1.90 1.53e-04 - no
B 4 GO:0009725 response to hormone stimulus 13/200 2.75 3.14e-04 - no
B 4 GO:0044260 cellular macromolecule metabolic process 54/200 1.53 3.40e-04 - no
B 3 GO:0009058 biosynthetic process 46/200 1.58 5.06e-04 - no
B 3 GO:0051716 cellular response to stimulus 12/200 2.71 5.48e-04 - no
B 3 GO:0023033 signaling pathway 10/200 2.96 6.43e-04 - no
B 5 GO:0006464 protein modification process 21/200 2.02 7.83e-04 - no
B 4 GO:0044249 cellular biosynthetic process 43/200 1.53 1.53e-03 - no
B 3 GO:0044238 primary metabolic process 67/200 1.35 2.12e-03 - no
B 4 GO:0043412 macromolecule modification 21/200 1.85 2.31e-03 - no
B 3 GO:0043170 macromolecule metabolic process 54/200 1.40 3.16e-03 - no
B 5 GO:0034645 cellular macromolecule biosynthetic process 33/200 1.53 5.01e-03 - no
B 4 GO:0009059 macromolecule biosynthetic process 33/200 1.53 5.25e-03 - no
C 5 GO:0005634 nucleus 34/200 2.17 5.61e-06 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 69/200 1.57 1.61e-05 - no
C 3 GO:0043227 membrane-bounded organelle 69/200 1.57 1.62e-05 - no
C 3 GO:0043229 intracellular organelle 69/200 1.49 8.69e-05 - no
C 3 GO:0005622 intracellular 76/200 1.43 1.54e-04 - no
C 3 GO:0044424 intracellular part 71/200 1.39 6.12e-04 - no
C 3 GO:0044464 cell part 111/200 1.21 2.24e-03 - no
M 3 GO:0003700 transcription factor activity 32/200 3.17 1.94e-09 - no
M 4 GO:0003677 DNA binding 36/200 2.60 3.82e-08 - no
M 3 GO:0016740 transferase activity 39/200 2.38 1.05e-07 - no
M 5 GO:0016301 kinase activity 25/200 3.11 1.52e-07 - no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 27/200 2.94 1.54e-07 - no
M 3 GO:0004871 signal transducer activity 10/200 4.45 1.84e-05 - no
M 3 GO:0003676 nucleic acid binding 41/200 1.73 1.57e-04 - no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 16/200 2.58 1.82e-04 - no
M 3 GO:0005515 protein binding 27/200 1.73 1.95e-03 - no
M 5 GO:0046872 metal ion binding 24/200 1.77 2.35e-03 - no
M 4 GO:0043169 cation binding 24/200 1.67 4.89e-03 - no
M 3 GO:0043167 ion binding 24/200 1.67 4.89e-03 - no
PS 4 PO:0020030 cotyledon 142/200 1.93 1.32e-23 - yes
PS 4 PO:0009047 stem 152/200 1.80 4.23e-23 - yes
PS 5 PO:0009028 microsporophyll 149/200 1.78 1.71e-21 - yes
PS 3 PO:0006001 phyllome 165/200 1.61 5.05e-21 - yes
PS 4 PO:0009025 leaf 155/200 1.69 1.59e-20 - yes
PS 4 PO:0009026 sporophyll 152/200 1.69 8.84e-20 - yes
PS 5 PO:0008037 seedling 150/200 1.70 1.49e-19 - yes
PS 3 PO:0009006 shoot 167/200 1.54 4.40e-19 - yes
PS 5 PO:0020039 leaf lamina 142/200 1.72 3.50e-18 - yes
PS 5 PO:0009046 flower 161/200 1.55 1.07e-17 - yes
PS 4 PO:0009049 inflorescence 161/200 1.54 2.21e-17 - yes
PS 4 PO:0009009 embryo 153/200 1.58 7.63e-17 - yes
PS 5 PO:0008034 leaf whorl 150/200 1.59 2.33e-16 - yes
PS 4 PO:0008033 phyllome whorl 150/200 1.59 2.33e-16 - yes
PS 3 PO:0009010 seed 153/200 1.56 3.07e-16 - yes
PS 4 PO:0009001 fruit 153/200 1.56 5.47e-16 - yes
PS 3 PO:0006342 infructescence 153/200 1.56 5.47e-16 - yes
PS 5 PO:0020038 petiole 131/200 1.72 1.01e-15 - yes
PS 5 PO:0000013 cauline leaf 132/200 1.71 1.22e-15 - yes
PS 3 PO:0009031 sepal 146/200 1.58 3.39e-15 - yes
PS 4 PO:0000230 inflorescence meristem 131/200 1.69 6.47e-15 - yes
PS 3 PO:0009013 meristem 133/200 1.66 1.44e-14 - yes
PS 3 PO:0009005 root 140/200 1.56 2.33e-13 - yes
PS 3 PO:0009032 petal 136/200 1.55 1.45e-12 - yes
PS 5 PO:0009027 megasporophyll 132/200 1.57 2.07e-12 - yes
PS 4 PO:0000037 shoot apex 130/200 1.51 1.14e-10 - yes
PS 3 PO:0020091 male gametophyte 126/200 1.52 2.54e-10 - yes
PS 5 PO:0009052 pedicel 118/200 1.45 5.51e-08 - yes
PS 4 PO:0006345 pollen tube 45/200 1.54 9.45e-04 - no
PG 3 PO:0007134 A vegetative growth 146/200 1.72 3.45e-19 - yes
PG 5 PO:0007133 leaf production 145/200 1.72 6.07e-19 - yes
PG 4 PO:0007112 1 main shoot growth 145/200 1.72 6.21e-19 - yes
PG 3 PO:0007615 flower development stages 160/200 1.53 9.32e-17 - yes
PG 4 PO:0007600 3 floral organ development stages 157/200 1.54 1.85e-16 - yes
PG 4 PO:0007616 4 anthesis 152/200 1.57 4.05e-16 - yes
PG 4 PO:0001054 4 leaf senescence stage 132/200 1.72 8.13e-16 - yes
PG 5 PO:0007604 corolla developmental stages 153/200 1.55 8.38e-16 - yes
PG 3 PO:0001050 leaf development stages 132/200 1.72 8.55e-16 - yes
PG 5 PO:0001185 C globular stage 126/200 1.54 1.11e-10 - yes
PG 4 PO:0007631 embryo development stages 133/200 1.48 2.80e-10 - yes
PG 3 PO:0001170 seed development stages 133/200 1.47 3.98e-10 - yes
PG 5 PO:0004507 D bilateral stage 122/200 1.48 5.18e-09 - yes
PG 5 PO:0001078 E expanded cotyledon stage 119/200 1.43 9.74e-08 - no
PG 5 PO:0001081 F mature embryo stage 108/200 1.36 1.70e-05 - no
PG 5 PO:0007605 androecium developmental stages 41/200 1.40 9.30e-03 - no
KW 0 response - 50/200 2.79 4.86e-12 - no
KW 0 transcription - 41/200 2.82 3.51e-10 - no
KW 0 nucleus - 34/200 2.64 6.54e-08 - no
KW 0 factor - 40/200 2.28 2.26e-07 - no
KW 0 stress - 18/200 3.84 2.94e-07 - no
KW 0 ipr000719 - 21/200 3.37 3.40e-07 - no
KW 0 ipr008271 - 18/200 3.69 5.39e-07 - no
KW 0 ipr011009 - 21/200 3.25 6.31e-07 - no
KW 0 ipr017442 - 18/200 3.42 1.65e-06 - no
KW 0 threonine - 21/200 2.80 6.93e-06 - no
KW 0 kinase - 26/200 2.46 7.39e-06 - no
KW 0 ipr017441 - 15/200 3.49 7.56e-06 - no
KW 0 active - 21/200 2.57 2.65e-05 - no
KW 0 transduction - 12/200 3.63 3.20e-05 - no
KW 0 serine - 22/200 2.47 3.24e-05 - no
KW 0 stimulus - 13/200 3.02 1.21e-04 - no
KW 0 regulation - 27/200 2.04 1.40e-04 - no
KW 0 signal - 13/200 2.96 1.48e-04 - no
KW 0 major - 10/200 3.50 1.56e-04 - no
KW 0 phosphorylation - 16/200 2.60 1.62e-04 - no
KW 0 regulator - 10/200 3.42 1.90e-04 - no
KW 0 defense - 11/200 3.15 2.23e-04 - no
KW 0 related - 44/200 1.57 8.06e-04 - no
KW 0 amino - 18/200 2.09 1.10e-03 - no
KW 0 leucine - 12/200 2.29 2.55e-03 - no
KW 0 finger - 17/200 1.84 5.55e-03 - no
KW 0 class - 12/200 2.00 7.55e-03 - no
KW 0 dependent - 22/200 1.64 8.03e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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