AT1G03630.2 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G74730.1 0.957263 unknown protein OMAT1P021800 - - -
AT1G54780.1 0.956525 thylakoid lumen 18.3 kDa protein OMAT1P015210 - OMAT1P113600 -
AT4G09650.1 0.946015 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) OMAT4P002310 - OMAT4P101870 -
AT3G18890.1 0.940551 binding / catalytic/ coenzyme binding OMAT3P007140 - - -
AT2G05100.1 0.93912 LHCB2.1 OMAT2P101060 - - -
AT1G26761.1 0.938381 unknown protein OMAT1P108360 - - -
AT5G36120.1 0.935161 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) OMAT5P108790 - - -
AT1G44000.1 0.933858 unknown protein OMAT1P111160 - - -
AT3G01550.1 0.932494 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) OMAT3P100350 - - -
AT5G14060.1 0.930427 CARAB-AK-LYS OMAT5P004790 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT2G37110.1 -0.847258 unknown protein OMAT2P009530 - OMAT2P108630 -
AT2G45140.1 -0.834692 PVA12 (PLANT VAP HOMOLOG 12) OMAT2P012610 - - -
AT5G26600.2 -0.813754 catalytic/ pyridoxal phosphate binding OMAT5P009080 - - -
AT3G62920.1 -0.80037 unknown protein - - - -
AT5G60580.2 -0.799213 zinc finger (C3HC4-type RING finger) family protein OMAT5P018440 - - -
AT3G63000.1 -0.796283 NPL41 (NPL4-LIKE PROTEIN 1) OMAT3P018000 - - -
AT2G10510.1 -0.791229 transposable element gene - - - -
AT5G63640.1 -0.782231 VHS domain-containing protein / GAT domain-containing protein OMAT5P019500 - - -
AT3G13224.2 -0.776338 RNA recognition motif (RRM)-containing protein OMAT3P004620 - - -
AT1G53910.1 -0.761978 RAP2.12 OMAT1P014940 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 7.27e-48:20 terms with high significance
7.27e-48 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0015979 photosynthesis 23/200 28.75 1.14e-28 2.56E-17 no
B 3 GO:0042440 pigment metabolic process 12/200 16.91 3.64e-13 - yes
B 4 GO:0006091 generation of precursor metabolites and energy 16/200 10.00 6.68e-13 - no
B 5 GO:0051188 cofactor biosynthetic process 13/200 13.86 7.70e-13 - yes
B 4 GO:0051186 cofactor metabolic process 15/200 10.10 2.65e-12 - yes
B 5 GO:0018130 heterocycle biosynthetic process 11/200 12.88 7.06e-11 - yes
B 5 GO:0005996 monosaccharide metabolic process 11/200 11.95 1.69e-10 - no
B 4 GO:0006066 alcohol metabolic process 13/200 8.35 6.93e-10 - no
B 4 GO:0044262 cellular carbohydrate metabolic process 16/200 5.18 1.72e-08 - no
B 3 GO:0009628 response to abiotic stimulus 24/200 3.24 1.20e-07 - no
B 4 GO:0005975 carbohydrate metabolic process 19/200 3.65 3.28e-07 - no
B 5 GO:0044271 cellular nitrogen compound biosynthetic process 13/200 4.91 5.19e-07 - yes
B 4 GO:0009409 response to cold 10/200 6.42 5.49e-07 - no
B 4 GO:0009266 response to temperature stimulus 12/200 5.26 5.79e-07 - no
B 4 GO:0046483 heterocycle metabolic process 13/200 4.80 6.78e-07 - yes
B 3 GO:0044237 cellular metabolic process 76/200 1.61 1.77e-06 - yes
B 5 GO:0009416 response to light stimulus 12/200 4.17 7.36e-06 - no
B 4 GO:0009314 response to radiation 12/200 4.04 1.04e-05 1.18E-16 no
B 3 GO:0044281 small molecule metabolic process 23/200 2.56 1.23e-05 - no
B 3 GO:0051707 response to other organism 11/200 3.28 1.54e-04 - no
B 3 GO:0009607 response to biotic stimulus 11/200 3.04 3.07e-04 - no
B 4 GO:0042180 cellular ketone metabolic process 11/200 2.45 1.98e-03 - no
B 5 GO:0043436 oxoacid metabolic process 10/200 2.27 5.01e-03 - no
B 4 GO:0006082 organic acid metabolic process 10/200 2.27 5.11e-03 - no
B 3 GO:0042221 response to chemical stimulus 20/200 1.75 5.25e-03 - no
B 4 GO:0006952 defense response 10/200 2.20 6.39e-03 - no
B 4 GO:0009725 response to hormone stimulus 10/200 2.12 8.35e-03 - no
C 5 GO:0044434 chloroplast part 100/200 18.05 1.45e-102 - yes
C 5 GO:0009536 plastid 142/200 7.69 1.43e-101 2.54E-26 yes
C 4 GO:0044435 plastid part 100/200 17.58 2.35e-101 3.85E-19 yes
C 4 GO:0009579 thylakoid 69/200 27.71 2.69e-82 6.75E-18 yes
C 4 GO:0044436 thylakoid part 60/200 29.09 1.20e-72 4.04E-19 yes
C 5 GO:0031976 plastid thylakoid 59/200 29.64 6.06e-72 5.82E-19 yes
C 4 GO:0031984 organelle subcompartment 59/200 29.46 8.94e-72 - yes
C 5 GO:0055035 plastid thylakoid membrane 56/200 32.33 1.43e-70 3.53E-19 yes
C 5 GO:0042651 thylakoid membrane 56/200 30.93 2.20e-69 4.14E-18 yes
C 4 GO:0034357 photosynthetic membrane 56/200 30.53 4.98e-69 5.46E-18 yes
C 4 GO:0044444 cytoplasmic part 144/200 4.15 3.61e-66 - yes
C 3 GO:0044446 intracellular organelle part 101/200 7.04 2.01e-62 - yes
C 3 GO:0044422 organelle part 101/200 7.04 2.18e-62 1.23E-18 yes
C 4 GO:0005737 cytoplasm 144/200 3.85 9.29e-62 2.55E-16 yes
C 4 GO:0043231 intracellular membrane-bounded organelle 145/200 3.30 1.56e-53 - yes
C 3 GO:0043227 membrane-bounded organelle 145/200 3.30 1.59e-53 - yes
C 3 GO:0043229 intracellular organelle 146/200 3.16 1.22e-51 - yes
C 3 GO:0044424 intracellular part 148/200 2.90 7.27e-48 - yes
C 3 GO:0005622 intracellular 150/200 2.82 3.26e-47 8.12E-16 yes
C 5 GO:0009526 plastid envelope 48/200 17.46 1.00e-46 3.07E-22 yes
C 4 GO:0031967 organelle envelope 48/200 11.52 6.34e-38 5.89E-19 yes
C 3 GO:0031975 envelope 48/200 11.52 6.34e-38 1.04E-16 yes
C 5 GO:0009532 plastid stroma 40/200 16.18 1.08e-37 - no
C 3 GO:0044464 cell part 172/200 1.88 1.79e-33 - yes
C 3 GO:0016020 membrane 80/200 2.92 6.17e-21 1.96E-15 yes
C 3 GO:0048046 apoplast 19/200 9.63 1.38e-14 - no
C 3 GO:0043234 protein complex 27/200 4.13 1.04e-10 5.61E-16 no
C 3 GO:0044425 membrane part 18/200 2.28 3.97e-04 - no
M 3 GO:0046906 tetrapyrrole binding 10/200 5.25 3.90e-06 - no
M 3 GO:0016491 oxidoreductase activity 20/200 2.37 1.19e-04 1.56E-17 yes
PS 5 PO:0020038 petiole 173/200 2.27 7.12e-47 8.07E-19 yes
PS 5 PO:0020039 leaf lamina 178/200 2.16 1.50e-46 - yes
PS 4 PO:0020030 cotyledon 170/200 2.32 2.82e-46 2.43E-20 yes
PS 5 PO:0000013 cauline leaf 172/200 2.23 7.66e-45 - yes
PS 3 PO:0009013 meristem 170/200 2.12 3.09e-40 - yes
PS 4 PO:0009025 leaf 178/200 1.94 9.37e-39 4.19E-17 yes
PS 4 PO:0009047 stem 171/200 2.03 6.21e-38 - yes
PS 4 PO:0000230 inflorescence meristem 165/200 2.12 7.69e-38 - yes
PS 3 PO:0009032 petal 173/200 1.97 3.06e-37 - yes
PS 5 PO:0009028 microsporophyll 169/200 2.02 1.66e-36 - yes
PS 5 PO:0008037 seedling 172/200 1.95 7.64e-36 8.66E-24 yes
PS 4 PO:0009026 sporophyll 173/200 1.92 1.87e-35 - yes
PS 4 PO:0000037 shoot apex 168/200 1.95 5.72e-34 - yes
PS 3 PO:0006001 phyllome 180/200 1.76 5.09e-33 - yes
PS 5 PO:0009052 pedicel 162/200 1.99 1.78e-32 - yes
PS 5 PO:0009027 megasporophyll 164/200 1.95 3.74e-32 - yes
PS 3 PO:0009031 sepal 171/200 1.85 5.57e-32 - yes
PS 4 PO:0009009 embryo 174/200 1.80 1.27e-31 2.90E-16 yes
PS 3 PO:0009010 seed 174/200 1.78 8.46e-31 3.72E-17 yes
PS 5 PO:0008034 leaf whorl 171/200 1.81 1.21e-30 - yes
PS 4 PO:0008033 phyllome whorl 171/200 1.81 1.21e-30 - yes
PS 4 PO:0009001 fruit 174/200 1.77 1.87e-30 - yes
PS 3 PO:0006342 infructescence 174/200 1.77 1.87e-30 - yes
PS 5 PO:0009046 flower 177/200 1.70 2.72e-29 - yes
PS 3 PO:0009006 shoot 180/200 1.66 4.94e-29 - yes
PS 4 PO:0009049 inflorescence 177/200 1.69 6.89e-29 - yes
PS 4 PO:0000293 guard cell 49/200 4.55 2.99e-20 - yes
PS 4 PO:0000351 guard mother cell 49/200 4.53 3.61e-20 - yes
PS 3 PO:0000070 meristemoid 49/200 4.53 3.87e-20 - yes
PS 5 PO:0006016 leaf epidermis 49/200 4.41 1.20e-19 - yes
PS 5 PO:0006035 shoot epidermis 49/200 4.38 1.61e-19 - yes
PS 5 PO:0000349 epidermal initial 49/200 4.35 2.16e-19 - yes
PS 4 PO:0004011 initial cell 49/200 4.32 2.82e-19 - yes
PS 3 PO:0004010 meristematic cell 49/200 4.31 3.01e-19 - yes
PS 3 PO:0004013 epidermal cell 50/200 4.19 4.03e-19 - yes
PS 3 PO:0020091 male gametophyte 144/200 1.74 4.91e-19 - yes
PS 4 PO:0005679 epidermis 50/200 4.04 1.97e-18 - yes
PS 3 PO:0009014 dermal tissue 50/200 4.04 2.01e-18 - yes
PG 4 PO:0001054 4 leaf senescence stage 171/200 2.22 3.87e-44 - yes
PG 3 PO:0001050 leaf development stages 171/200 2.22 4.22e-44 - yes
PG 5 PO:0007133 leaf production 173/200 2.06 5.14e-40 - yes
PG 4 PO:0007112 1 main shoot growth 173/200 2.06 5.32e-40 - yes
PG 3 PO:0007134 A vegetative growth 173/200 2.04 1.55e-39 - yes
PG 5 PO:0001081 F mature embryo stage 160/200 2.01 3.53e-32 - yes
PG 5 PO:0004507 D bilateral stage 161/200 1.95 6.71e-31 - yes
PG 4 PO:0007616 4 anthesis 173/200 1.78 1.60e-30 - yes
PG 5 PO:0001078 E expanded cotyledon stage 161/200 1.94 1.90e-30 - yes
PG 5 PO:0001185 C globular stage 160/200 1.95 2.40e-30 - yes
PG 5 PO:0007604 corolla developmental stages 174/200 1.76 3.35e-30 - yes
PG 4 PO:0007600 3 floral organ development stages 175/200 1.72 5.71e-29 - yes
PG 4 PO:0007631 embryo development stages 165/200 1.83 1.11e-28 - yes
PG 3 PO:0001170 seed development stages 165/200 1.82 2.03e-28 - yes
PG 3 PO:0007615 flower development stages 175/200 1.67 3.77e-27 - yes
KW 0 chloroplast - 126/200 7.13 1.07e-82 5.96E-22 yes
KW 0 thylakoid - 52/200 24.42 1.36e-58 6.75E-18 yes
KW 0 photosystem - 19/200 31.59 5.11e-25 1.30E-17 no
KW 0 envelope - 28/200 12.25 2.01e-23 1.04E-16 yes
KW 0 stroma - 24/200 12.87 6.84e-21 - no
KW 0 components - 22/200 13.55 7.81e-20 5.72E-16 no
KW 0 light - 20/200 7.49 4.17e-13 7.26E-26 yes
KW 0 membrane - 61/200 2.29 6.34e-11 1.96E-15 yes
KW 0 response - 44/200 2.45 6.28e-09 3.49E-15 no
KW 0 biosynthetic - 25/200 3.50 1.45e-08 6.61E-17 yes
KW 0 stimulus - 18/200 4.18 7.93e-08 - no
KW 0 subunit - 24/200 3.27 9.79e-08 - no
KW 0 complex - 26/200 3.07 1.11e-07 1.40E-15 no
KW 0 dehydrogenase - 14/200 4.83 2.67e-07 0 yes
KW 0 phosphate - 14/200 4.62 4.69e-07 - no
KW 0 encodes - 50/200 1.96 7.73e-07 1.59E-16 yes
KW 0 ipr016040 - 10/200 4.64 1.23e-05 - yes
KW 0 electron - 13/200 3.65 1.58e-05 7.99E-16 no
KW 0 process - 39/200 1.90 2.76e-05 9.34E-16 yes
KW 0 oxidoreductase - 12/200 2.57 8.91e-04 0 yes
KW 0 putative - 37/200 1.60 1.37e-03 2.87E-16 no
KW 0 transport - 18/200 1.85 4.26e-03 8.46E-16 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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