AT1G10470.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G49720.1 0.852026 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1) OMAT1P013690 - - -
AT1G71040.1 0.831717 LPR2 (Low Phosphate Root2) OMAT1P118030 - OMAT1P020320 -
AT5G14730.1 0.824802 unknown protein OMAT5P005010 - - -
AT1G73650.3 0.82257 oxidoreductase, acting on the CH-CH group of donors OMAT1P118795 - - -
AT2G17540.2 0.819879 unknown protein OMAT2P102310 - - -
AT1G13260.1 0.798347 RAV1 OMAT1P004700 - OMAT1P104250 -
AT1G52200.1 0.796707 unknown protein OMAT1P112770 - - -
AT2G44490.1 0.794727 PEN2 (PENETRATION 2) OMAT2P012370 - - -
AT2G45660.1 0.790098 AGL20 (AGAMOUS-LIKE 20) OMAT2P111750 - - -
AT3G30390.1 0.789045 amino acid transporter family protein OMAT3P109640 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G30670.1 -0.875329 basic helix-loop-helix (bHLH) family protein - - - -
AT5G39920.1 -0.831509 FUNCTIONS IN: molecular_function unknown - - - -
AT3G32360.1 -0.826733 transposable element gene - - - -
AT5G27043.1 -0.820092 pseudogene, hypothetical protein - - - -
AT4G06642.1 -0.81163 transposable element gene - - - -
AT4G03570.1 -0.810127 FUNCTIONS IN: molecular_function unknown - - - -
AT5G65400.1 -0.806256 unknown protein OMAT5P020190 - - -
AT3G51560.1 -0.781178 ATP binding / protein binding / transmembrane receptor - - - -
AT2G10810.1 -0.776489 transposable element gene - - - -
AT1G35480.1 -0.773821 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 5.51e-18:20 terms with high significance
5.51e-18 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0050789 regulation of biological process 39/200 2.25 4.59e-07 2.60E-17 yes
B 3 GO:0050794 regulation of cellular process 34/200 2.23 3.27e-06 2.58E-17 no
B 5 GO:0042157 lipoprotein metabolic process 12/200 4.42 3.94e-06 - no
B 4 GO:0080090 regulation of primary metabolic process 26/200 2.47 7.09e-06 - no
B 4 GO:0031323 regulation of cellular metabolic process 26/200 2.40 1.14e-05 - no
B 4 GO:0060255 regulation of macromolecule metabolic process 26/200 2.38 1.42e-05 - no
B 5 GO:0006464 protein modification process 25/200 2.40 1.68e-05 - no
B 3 GO:0006950 response to stress 28/200 2.26 1.79e-05 2.13E-16 yes
B 3 GO:0019222 regulation of metabolic process 27/200 2.29 1.88e-05 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 24/200 2.44 1.90e-05 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 24/200 2.39 2.54e-05 - no
B 4 GO:0009889 regulation of biosynthetic process 24/200 2.39 2.61e-05 9.02E-19 no
B 5 GO:0031326 regulation of cellular biosynthetic process 24/200 2.39 2.61e-05 1.93E-19 no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 24/200 2.37 3.00e-05 - no
B 5 GO:0006350 transcription 24/200 2.35 3.40e-05 0 no
B 5 GO:0006796 phosphate metabolic process 18/200 2.71 4.23e-05 - no
B 4 GO:0006793 phosphorus metabolic process 18/200 2.71 4.28e-05 - no
B 3 GO:0044238 primary metabolic process 74/200 1.49 4.29e-05 - no
B 4 GO:0006952 defense response 14/200 3.08 5.97e-05 - no
B 5 GO:0010468 regulation of gene expression 24/200 2.25 6.81e-05 1.38E-22 no
B 3 GO:0009058 biosynthetic process 49/200 1.68 6.81e-05 3.72E-18 no
B 4 GO:0043412 macromolecule modification 25/200 2.20 7.05e-05 - no
B 5 GO:0034645 cellular macromolecule biosynthetic process 38/200 1.76 1.85e-04 - no
B 4 GO:0009059 macromolecule biosynthetic process 38/200 1.76 1.97e-04 - no
B 4 GO:0044249 cellular biosynthetic process 46/200 1.63 2.32e-04 5.63E-19 no
B 3 GO:0023046 signaling process 10/200 3.08 4.55e-04 5.04E-17 no
B 3 GO:0023060 signal transmission 10/200 3.08 4.55e-04 1.30E-14 no
B 4 GO:0048513 organ development 12/200 2.71 5.55e-04 1.01E-16 no
B 4 GO:0048731 system development 12/200 2.71 5.62e-04 3.18E-16 no
B 4 GO:0044260 cellular macromolecule metabolic process 53/200 1.50 6.18e-04 - no
B 5 GO:0051252 regulation of RNA metabolic process 13/200 2.49 8.39e-04 - no
B 3 GO:0044237 cellular metabolic process 66/200 1.40 9.49e-04 - no
B 3 GO:0042221 response to chemical stimulus 22/200 1.93 1.11e-03 - yes
B 3 GO:0043170 macromolecule metabolic process 56/200 1.45 1.11e-03 - no
B 5 GO:0032774 RNA biosynthetic process 13/200 2.37 1.31e-03 3.72E-18 no
B 4 GO:0009725 response to hormone stimulus 11/200 2.33 3.03e-03 1.14E-10 yes
B 4 GO:0010033 response to organic substance 14/200 2.09 3.12e-03 - yes
B 3 GO:0006807 nitrogen compound metabolic process 31/200 1.56 4.64e-03 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 27/200 1.60 5.58e-03 - no
B 3 GO:0009719 response to endogenous stimulus 11/200 2.13 5.96e-03 - yes
B 4 GO:0034641 cellular nitrogen compound metabolic process 30/200 1.54 6.35e-03 - no
B 5 GO:0090304 nucleic acid metabolic process 24/200 1.60 8.50e-03 - no
B 3 GO:0048856 anatomical structure development 16/200 1.79 8.75e-03 - yes
C 3 GO:0044464 cell part 125/200 1.37 6.47e-07 2.16E-18 yes
C 4 GO:0005886 plasma membrane 31/200 2.50 7.67e-07 2.97E-16 no
C 3 GO:0016020 membrane 52/200 1.90 1.17e-06 1.96E-15 no
C 3 GO:0005622 intracellular 77/200 1.45 8.59e-05 8.12E-16 yes
C 3 GO:0044424 intracellular part 73/200 1.43 2.03e-04 4.23E-17 yes
C 5 GO:0005773 vacuole 11/200 3.19 2.03e-04 1.30E-14 no
C 4 GO:0005737 cytoplasm 54/200 1.44 1.49e-03 2.55E-16 yes
C 4 GO:0043231 intracellular membrane-bounded organelle 60/200 1.37 3.03e-03 - yes
C 3 GO:0043227 membrane-bounded organelle 60/200 1.37 3.04e-03 - yes
C 3 GO:0043229 intracellular organelle 61/200 1.32 6.10e-03 - yes
C 4 GO:0044444 cytoplasmic part 48/200 1.38 6.50e-03 - no
M 3 GO:0004871 signal transducer activity 13/200 5.78 7.26e-08 - yes
M 3 GO:0003700 transcription factor activity 28/200 2.77 3.22e-07 1.66E-16 no
M 5 GO:0016301 kinase activity 22/200 2.73 6.45e-06 3.95E-16 no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 22/200 2.40 5.02e-05 - no
M 4 GO:0003677 DNA binding 29/200 2.09 5.27e-05 1.38E-22 no
M 3 GO:0005515 protein binding 30/200 1.92 1.98e-04 1.38E-22 yes
M 5 GO:0015075 ion transmembrane transporter activity 10/200 3.19 3.43e-04 - no
M 3 GO:0016740 transferase activity 30/200 1.83 4.23e-04 - no
M 4 GO:0022891 substrate-specific transmembrane transporter activity 12/200 2.72 5.34e-04 - no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 15/200 2.42 5.45e-04 - no
M 3 GO:0022892 substrate-specific transporter activity 12/200 2.32 2.22e-03 - no
M 5 GO:0046872 metal ion binding 24/200 1.77 2.35e-03 - no
M 5 GO:0030554 adenyl nucleotide binding 17/200 1.88 4.43e-03 - no
M 4 GO:0001883 purine nucleoside binding 17/200 1.88 4.43e-03 - no
M 3 GO:0022857 transmembrane transporter activity 12/200 2.14 4.49e-03 - no
M 3 GO:0001882 nucleoside binding 17/200 1.87 4.55e-03 1.72E-17 no
M 4 GO:0043169 cation binding 24/200 1.67 4.89e-03 1.15E-09 no
M 3 GO:0043167 ion binding 24/200 1.67 4.89e-03 1.38E-22 no
M 5 GO:0032555 purine ribonucleotide binding 17/200 1.73 9.93e-03 - no
M 4 GO:0032553 ribonucleotide binding 17/200 1.73 9.93e-03 - no
PS 4 PO:0009025 leaf 162/200 1.76 3.31e-25 1.38E-22 yes
PS 4 PO:0020030 cotyledon 144/200 1.96 6.56e-25 1.38E-22 yes
PS 4 PO:0009047 stem 154/200 1.83 1.98e-24 4.88E-17 yes
PS 5 PO:0020039 leaf lamina 150/200 1.82 5.34e-23 3.45E-19 yes
PS 5 PO:0008037 seedling 154/200 1.74 4.99e-22 1.38E-22 yes
PS 3 PO:0009013 meristem 146/200 1.82 9.59e-22 3.96E-26 yes
PS 4 PO:0000230 inflorescence meristem 143/200 1.84 1.61e-21 - yes
PS 5 PO:0000013 cauline leaf 142/200 1.84 3.48e-21 - yes
PS 3 PO:0009005 root 153/200 1.70 2.12e-20 2.36E-25 yes
PS 5 PO:0020038 petiole 139/200 1.83 4.46e-20 1.38E-22 yes
PS 3 PO:0006001 phyllome 162/200 1.58 4.40e-19 - yes
PS 5 PO:0009028 microsporophyll 144/200 1.72 1.61e-18 - yes
PS 5 PO:0008034 leaf whorl 153/200 1.62 4.84e-18 - yes
PS 4 PO:0008033 phyllome whorl 153/200 1.62 4.84e-18 - yes
PS 4 PO:0009009 embryo 155/200 1.60 5.51e-18 0 yes
PS 4 PO:0009026 sporophyll 148/200 1.64 1.85e-17 - yes
PS 3 PO:0009010 seed 155/200 1.58 2.32e-17 1.38E-22 yes
PS 4 PO:0009001 fruit 155/200 1.58 4.23e-17 5.45E-17 yes
PS 3 PO:0006342 infructescence 155/200 1.58 4.23e-17 - yes
PS 3 PO:0009006 shoot 162/200 1.49 4.91e-16 4.13E-35 yes
PS 5 PO:0009046 flower 155/200 1.49 2.37e-14 1.38E-22 yes
PS 4 PO:0000037 shoot apex 138/200 1.60 3.08e-14 - yes
PS 4 PO:0009049 inflorescence 155/200 1.48 4.56e-14 1.38E-22 yes
PS 5 PO:0009027 megasporophyll 133/200 1.58 7.35e-13 - yes
PS 3 PO:0009031 sepal 140/200 1.52 2.65e-12 - yes
PS 3 PO:0009032 petal 133/200 1.52 2.95e-11 - yes
PS 3 PO:0020091 male gametophyte 125/200 1.51 6.27e-10 - yes
PS 5 PO:0009052 pedicel 115/200 1.41 5.26e-07 - yes
PG 5 PO:0007133 leaf production 155/200 1.84 2.86e-25 4.07E-18 yes
PG 4 PO:0007112 1 main shoot growth 155/200 1.84 2.94e-25 - yes
PG 3 PO:0007134 A vegetative growth 155/200 1.83 6.91e-25 6.27E-18 yes
PG 4 PO:0001054 4 leaf senescence stage 145/200 1.89 2.90e-23 - yes
PG 3 PO:0001050 leaf development stages 145/200 1.88 3.09e-23 7.56E-19 yes
PG 5 PO:0007604 corolla developmental stages 153/200 1.55 8.38e-16 - yes
PG 4 PO:0007600 3 floral organ development stages 155/200 1.52 2.33e-15 - yes
PG 3 PO:0007615 flower development stages 156/200 1.49 1.50e-14 4.87E-19 yes
PG 4 PO:0007616 4 anthesis 149/200 1.54 1.53e-14 1.03E-18 yes
PG 5 PO:0004507 D bilateral stage 123/200 1.49 2.21e-09 - yes
PG 5 PO:0001078 E expanded cotyledon stage 123/200 1.48 3.83e-09 - yes
PG 5 PO:0001185 C globular stage 122/200 1.49 3.93e-09 - yes
PG 4 PO:0007631 embryo development stages 130/200 1.44 4.04e-09 - yes
PG 3 PO:0001170 seed development stages 130/200 1.44 5.62e-09 - yes
PG 5 PO:0001081 F mature embryo stage 119/200 1.50 5.64e-09 - yes
KW 0 leucine - 20/200 3.81 8.32e-08 7.19E-22 no
KW 0 plasma - 31/200 2.70 1.38e-07 1.69E-15 no
KW 0 response - 41/200 2.29 1.55e-07 0 yes
KW 0 membrane - 53/200 1.99 1.96e-07 1.96E-15 no
KW 0 ipr001611 - 13/200 4.60 1.13e-06 - no
KW 0 ipr017442 - 18/200 3.42 1.65e-06 - no
KW 0 myristoylation - 12/200 4.73 1.91e-06 - no
KW 0 class - 19/200 3.17 2.80e-06 5.06E-16 no
KW 0 transcription - 33/200 2.27 2.98e-06 0 yes
KW 0 regulation - 31/200 2.35 3.04e-06 1.38E-22 no
KW 0 ipr017441 - 15/200 3.49 7.56e-06 - no
KW 0 serine - 23/200 2.58 1.08e-05 3.52E-16 no
KW 0 defense - 13/200 3.73 1.26e-05 1.26E-16 no
KW 0 phosphorylation - 18/200 2.93 1.48e-05 5.50E-16 no
KW 0 ipr000719 - 18/200 2.89 1.79e-05 - no
KW 0 threonine - 20/200 2.67 2.26e-05 1.92E-16 no
KW 0 ipr011009 - 18/200 2.78 2.95e-05 - no
KW 0 transduction - 12/200 3.63 3.20e-05 1.38E-22 yes
KW 0 terminal - 37/200 1.92 3.71e-05 1.38E-22 no
KW 0 signal - 14/200 3.19 3.97e-05 1.38E-22 yes
KW 0 region - 30/200 2.08 4.63e-05 1.38E-22 yes
KW 0 kinase - 24/200 2.27 5.84e-05 1.01E-15 no
KW 0 dependent - 28/200 2.09 7.17e-05 1.38E-22 no
KW 0 calcium - 10/200 3.75 8.46e-05 1.11E-15 no
KW 0 vacuole - 11/200 3.49 8.71e-05 1.30E-14 no
KW 0 ipr008271 - 14/200 2.87 1.29e-04 - no
KW 0 resistance - 10/200 3.52 1.50e-04 1.11E-15 no
KW 0 active - 19/200 2.32 2.24e-04 1.38E-22 no
KW 0 transmembrane - 17/200 2.34 3.91e-04 1.30E-14 no
KW 0 factor - 31/200 1.77 6.35e-04 4.48E-19 no
KW 0 amino - 18/200 2.09 1.10e-03 1.38E-22 no
KW 0 nucleus - 24/200 1.86 1.18e-03 1.38E-22 yes
KW 0 related - 43/200 1.53 1.47e-03 2.38E-18 no
KW 0 putative - 36/200 1.56 2.55e-03 1.38E-22 no
KW 0 repeat - 23/200 1.77 2.74e-03 1.70E-16 no
KW 0 stimulus - 10/200 2.32 4.26e-03 1.58E-16 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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