AT1G10900.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G01120.1 0.868008 MTO1 (METHIONINE OVERACCUMULATION 1) OMAT3P100040 - - -
AT5G56730.1 0.842033 peptidase M16 family protein / insulinase family protein - - - -
AT3G56980.1 0.835885 BHLH039 OMAT3P113980 - - -
AT3G56970.1 0.832135 BHLH038 OMAT3P113970 - - -
AT1G78320.1 0.830137 ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23) OMAT1P120530 - - -
AT3G43600.1 0.828975 AAO2 (ALDEHYDE OXIDASE 2) OMAT3P109830 - - -
AT5G04950.1 0.821419 NAS1 (NICOTIANAMINE SYNTHASE 1) OMAT5P101220 - - -
AT1G64780.1 0.815069 ATAMT1 OMAT1P115970 - - -
AT2G20610.1 0.809358 SUR1 (SUPERROOT 1) OMAT2P103170 - - -
AT3G62270.1 0.801722 anion exchange family protein OMAT3P115530 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G35405.1 -0.758868 transposable element gene - - - -
AT3G28958.1 -0.744417 plastocyanin-like domain-containing protein - - - -
AT1G14590.1 -0.741535 FUNCTIONS IN: molecular_function unknown - - - -
AT1G20970.1 -0.735661 FUNCTIONS IN: molecular_function unknown OMAT1P007680 - - -
AT2G10620.1 -0.723611 transposable element gene - - - -
AT1G61060.1 -0.700068 F-box family protein - - - -
AT3G42356.1 -0.681894 transposable element gene - - - -
AT5G35425.1 -0.679362 transposable element gene - - - -
AT5G63168.1 -0.67833 unknown protein - - - -
AT5G08565.1 -0.669632 positive transcription elongation factor/ zinc ion binding - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0006950 response to stress 33/200 2.66 8.11e-08 - no
B 4 GO:0006519 cellular amino acid and derivative metabolic process 14/200 4.03 2.55e-06 - no
B 5 GO:0044271 cellular nitrogen compound biosynthetic process 12/200 4.53 3.01e-06 - no
B 5 GO:0044106 cellular amine metabolic process 11/200 4.84 3.52e-06 - no
B 4 GO:0006811 ion transport 11/200 4.55 6.57e-06 - no
B 4 GO:0009308 amine metabolic process 11/200 4.40 9.27e-06 - no
B 5 GO:0006520 cellular amino acid metabolic process 10/200 4.75 9.93e-06 - no
B 4 GO:0006952 defense response 14/200 3.08 5.97e-05 - no
B 3 GO:0009058 biosynthetic process 49/200 1.68 6.81e-05 - no
B 4 GO:0034641 cellular nitrogen compound metabolic process 36/200 1.85 1.01e-04 - no
B 3 GO:0006807 nitrogen compound metabolic process 36/200 1.81 1.51e-04 - no
B 5 GO:0043436 oxoacid metabolic process 13/200 2.95 1.52e-04 - no
B 3 GO:0051707 response to other organism 11/200 3.28 1.54e-04 - no
B 4 GO:0006082 organic acid metabolic process 13/200 2.94 1.57e-04 - no
B 3 GO:0044237 cellular metabolic process 69/200 1.46 1.79e-04 - yes
B 4 GO:0042180 cellular ketone metabolic process 13/200 2.90 1.85e-04 - no
B 4 GO:0044283 small molecule biosynthetic process 13/200 2.86 2.09e-04 - no
B 3 GO:0044281 small molecule metabolic process 20/200 2.23 2.82e-04 - no
B 3 GO:0009607 response to biotic stimulus 11/200 3.04 3.07e-04 - no
B 4 GO:0044249 cellular biosynthetic process 45/200 1.60 4.46e-04 - no
B 3 GO:0042221 response to chemical stimulus 23/200 2.02 4.75e-04 - no
B 3 GO:0050794 regulation of cellular process 27/200 1.77 1.35e-03 - no
B 3 GO:0051716 cellular response to stimulus 11/200 2.49 1.75e-03 - no
B 3 GO:0044238 primary metabolic process 67/200 1.35 2.12e-03 - yes
B 3 GO:0050789 regulation of biological process 29/200 1.68 2.16e-03 - no
B 3 GO:0048856 anatomical structure development 17/200 1.90 3.97e-03 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 18/200 1.83 4.86e-03 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 18/200 1.80 5.83e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 18/200 1.79 5.94e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 18/200 1.79 5.94e-03 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 18/200 1.78 6.47e-03 - no
B 5 GO:0006350 transcription 18/200 1.76 7.01e-03 - no
B 4 GO:0080090 regulation of primary metabolic process 18/200 1.71 9.60e-03 - no
C 3 GO:0044464 cell part 144/200 1.57 1.33e-14 - yes
C 3 GO:0016020 membrane 50/200 1.83 6.09e-06 3.64E-21 yes
C 3 GO:0012505 endomembrane system 42/200 1.73 1.30e-04 - no
C 3 GO:0044424 intracellular part 72/200 1.41 3.55e-04 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 64/200 1.46 3.66e-04 - no
C 3 GO:0043227 membrane-bounded organelle 64/200 1.46 3.67e-04 - no
C 4 GO:0005618 cell wall 10/200 3.01 5.55e-04 - no
C 3 GO:0030312 external encapsulating structure 10/200 2.99 5.89e-04 - no
C 3 GO:0005622 intracellular 73/200 1.37 7.97e-04 - no
C 3 GO:0043229 intracellular organelle 65/200 1.41 8.62e-04 - no
C 5 GO:0005634 nucleus 28/200 1.79 9.33e-04 - no
C 4 GO:0005886 plasma membrane 23/200 1.86 1.49e-03 3.64E-21 yes
C 5 GO:0009536 plastid 30/200 1.62 2.97e-03 - no
C 5 GO:0005739 mitochondrion 13/200 2.03 5.27e-03 - no
C 4 GO:0005737 cytoplasm 51/200 1.36 6.79e-03 - no
C 4 GO:0031224 intrinsic to membrane 11/200 2.05 8.07e-03 - no
C 3 GO:0044446 intracellular organelle part 23/200 1.60 9.19e-03 - no
C 3 GO:0044422 organelle part 23/200 1.60 9.27e-03 - no
M 3 GO:0016491 oxidoreductase activity 25/200 2.96 3.71e-07 - no
M 5 GO:0046872 metal ion binding 32/200 2.36 1.90e-06 - no
M 4 GO:0043169 cation binding 32/200 2.23 6.35e-06 - no
M 3 GO:0043167 ion binding 32/200 2.23 6.35e-06 - no
M 5 GO:0015075 ion transmembrane transporter activity 12/200 3.83 1.83e-05 - no
M 4 GO:0022891 substrate-specific transmembrane transporter activity 12/200 2.72 5.34e-04 - no
M 3 GO:0016740 transferase activity 29/200 1.77 8.99e-04 - yes
M 3 GO:0022857 transmembrane transporter activity 13/200 2.31 1.65e-03 - no
M 3 GO:0022892 substrate-specific transporter activity 12/200 2.32 2.22e-03 - no
M 4 GO:0016788 hydrolase activity, acting on ester bonds 12/200 2.02 7.08e-03 - no
PS 3 PO:0009005 root 143/200 1.59 8.07e-15 - yes
PS 5 PO:0008037 seedling 127/200 1.44 1.14e-08 - yes
PS 4 PO:0009001 fruit 132/200 1.34 5.24e-07 - yes
PS 3 PO:0006342 infructescence 132/200 1.34 5.24e-07 - yes
PS 4 PO:0009009 embryo 130/200 1.35 6.67e-07 - yes
PS 3 PO:0009010 seed 131/200 1.34 7.58e-07 - yes
PS 4 PO:0005679 epidermis 29/200 2.34 6.36e-06 - no
PS 3 PO:0009014 dermal tissue 29/200 2.34 6.42e-06 - no
PS 5 PO:0000349 epidermal initial 27/200 2.39 8.55e-06 - no
PS 3 PO:0004013 epidermal cell 28/200 2.35 8.63e-06 - no
PS 4 PO:0004011 initial cell 27/200 2.38 9.62e-06 - no
PS 3 PO:0004010 meristematic cell 27/200 2.38 9.90e-06 - no
PS 4 PO:0009025 leaf 121/200 1.32 1.33e-05 - yes
PS 5 PO:0020039 leaf lamina 110/200 1.33 3.07e-05 - yes
PS 4 PO:0000293 guard cell 24/200 2.23 7.93e-05 - no
PS 4 PO:0020030 cotyledon 99/200 1.35 8.05e-05 - yes
PS 4 PO:0000351 guard mother cell 24/200 2.22 8.51e-05 - no
PS 3 PO:0000070 meristemoid 24/200 2.22 8.73e-05 - no
PS 5 PO:0006016 leaf epidermis 24/200 2.16 1.33e-04 - no
PS 5 PO:0006035 shoot epidermis 24/200 2.14 1.48e-04 - no
PS 3 PO:0009006 shoot 133/200 1.22 1.65e-04 - yes
PS 3 PO:0006001 phyllome 124/200 1.21 8.74e-04 - yes
PS 5 PO:0020038 petiole 97/200 1.27 1.02e-03 - yes
PS 4 PO:0000037 shoot apex 103/200 1.20 6.42e-03 - yes
PG 3 PO:0007134 A vegetative growth 110/200 1.30 1.19e-04 - yes
PG 5 PO:0007133 leaf production 109/200 1.30 1.48e-04 - yes
PG 4 PO:0007112 1 main shoot growth 109/200 1.30 1.50e-04 - yes
PG 4 PO:0001054 4 leaf senescence stage 98/200 1.27 9.32e-04 - yes
PG 3 PO:0001050 leaf development stages 98/200 1.27 9.52e-04 - yes
PG 3 PO:0007615 flower development stages 121/200 1.16 8.45e-03 - yes
KW 0 hypocotyl - 15/200 6.43 2.09e-09 - no
KW 0 response - 42/200 2.34 5.49e-08 - no
KW 0 electron - 15/200 4.21 6.90e-07 - no
KW 0 class - 19/200 3.17 2.80e-06 - no
KW 0 process - 41/200 2.00 5.02e-06 - yes
KW 0 stress - 16/200 3.41 5.60e-06 - no
KW 0 defense - 13/200 3.73 1.26e-05 - no
KW 0 membrane - 48/200 1.80 1.35e-05 3.64E-21 yes
KW 0 carrier - 14/200 3.49 1.41e-05 - no
KW 0 dimerisation - 10/200 4.16 3.39e-05 - no
KW 0 biosynthetic - 19/200 2.66 3.59e-05 - no
KW 0 phosphate - 11/200 3.63 6.03e-05 0 yes
KW 0 endomembrane - 42/200 1.78 6.96e-05 - no
KW 0 active - 20/200 2.44 7.90e-05 - no
KW 0 system - 42/200 1.73 1.22e-04 - no
KW 0 terminal - 35/200 1.82 1.83e-04 - no
KW 0 region - 27/200 1.87 5.86e-04 - no
KW 0 encodes - 41/200 1.61 7.38e-04 - no
KW 0 plasma - 22/200 1.92 1.19e-03 3.64E-21 yes
KW 0 catalytic - 20/200 1.97 1.36e-03 - no
KW 0 member - 21/200 1.92 1.51e-03 - no
KW 0 synthase - 11/200 2.51 1.65e-03 - no
KW 0 ipr017442 - 12/200 2.28 2.62e-03 - no
KW 0 transcription - 25/200 1.72 2.82e-03 - no
KW 0 regulation - 23/200 1.74 3.44e-03 - no
KW 0 threonine - 15/200 2.00 3.73e-03 - no
KW 0 ipr008271 - 11/200 2.25 3.92e-03 - no
KW 0 ipr017441 - 10/200 2.33 4.17e-03 - no
KW 0 putative - 35/200 1.52 4.58e-03 - no
KW 0 nucleus - 22/200 1.71 5.19e-03 - no
KW 0 chloroplast - 28/200 1.59 5.54e-03 - no
KW 0 receptor - 10/200 2.10 8.73e-03 - no
KW 0 conserved - 22/200 1.63 9.07e-03 3.00E-09 no
KW 0 mitochondrion - 11/200 2.01 9.51e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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