AT1G12610.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G80840.1 0.905423 WRKY40 OMAT1P024240 - - -
AT1G11960.1 0.898809 FUNCTIONS IN: molecular_function unknown OMAT1P103810 - - -
AT1G63030.1 0.892102 ddf2 (DWARF AND DELAYED FLOWERING 2) - - - -
AT1G74930.1 0.867074 ORA47 OMAT1P021850 - - -
AT1G66500.1 0.865461 zinc finger (C2H2-type) family protein - - - -
AT2G30790.1 0.864341 PSBP-2 (photosystem II subunit P-2) OMAT2P106430 - - -
AT2G28830.1 0.858453 binding / structural constituent of ribosome / ubiquitin-protein ligase OMAT2P105830 - - -
AT5G24110.1 0.856415 WRKY30 OMAT5P107080 - - -
AT4G21930.1 0.85069 unknown protein OMAT4P006690 - - -
AT4G35985.1 0.846664 senescence/dehydration-associated protein-related OMAT4P110660 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G44800.1 -0.724211 meprin and TRAF homology domain-containing protein / MATH domain-containing protein - - - -
AT1G69150.1 -0.72373 DC1 domain-containing protein - - - -
AT2G19380.1 -0.709073 RNA recognition motif (RRM)-containing protein - - - -
AT2G10420.1 -0.704413 transposable element gene - - - -
AT3G48370.1 -0.695754 transposable element gene - - - -
AT2G41810.1 -0.685384 FUNCTIONS IN: molecular_function unknown - - - -
AT5G03400.1 -0.684679 unknown protein - - - -
AT2G10080.1 -0.683602 transposable element gene - - - -
AT3G05193.1 -0.681613 unknown protein - - - -
AT2G12950.1 -0.681472 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 3.52e-09:20 terms with high significance
3.52e-09 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0006950 response to stress 47/200 3.79 2.85e-16 5.28E-10 yes
B 4 GO:0006952 defense response 29/200 6.37 3.17e-16 5.28E-10 no
B 3 GO:0042221 response to chemical stimulus 42/200 3.68 3.43e-14 - no
B 5 GO:0009743 response to carbohydrate stimulus 15/200 11.93 2.03e-13 - no
B 4 GO:0010033 response to organic substance 31/200 4.64 2.11e-13 - no
B 3 GO:0006955 immune response 17/200 8.97 9.14e-13 5.28E-10 no
B 4 GO:0045087 innate immune response 14/200 7.89 3.91e-10 - no
B 3 GO:0009607 response to biotic stimulus 19/200 5.26 7.96e-10 - no
B 3 GO:0008219 cell death 12/200 8.28 2.93e-09 - no
B 3 GO:0051707 response to other organism 17/200 5.07 9.15e-09 - no
B 3 GO:0023046 signaling process 16/200 4.94 3.42e-08 5.28E-10 no
B 3 GO:0023060 signal transmission 16/200 4.94 3.42e-08 5.28E-10 no
B 4 GO:0009617 response to bacterium 11/200 7.12 5.94e-08 - no
B 3 GO:0009719 response to endogenous stimulus 18/200 3.49 1.20e-06 - no
B 4 GO:0009725 response to hormone stimulus 17/200 3.60 1.47e-06 - no
B 3 GO:0050789 regulation of biological process 37/200 2.14 3.22e-06 5.28E-10 yes
B 4 GO:0007165 signal transduction 12/200 4.17 7.36e-06 5.28E-10 no
B 3 GO:0023033 signaling pathway 13/200 3.85 8.83e-06 5.28E-10 no
B 5 GO:0071310 cellular response to organic substance 10/200 4.78 9.41e-06 - no
B 4 GO:0070887 cellular response to chemical stimulus 10/200 4.40 2.03e-05 - no
B 3 GO:0050794 regulation of cellular process 32/200 2.10 2.18e-05 5.28E-10 no
B 5 GO:0051252 regulation of RNA metabolic process 16/200 3.06 2.24e-05 - no
B 5 GO:0032774 RNA biosynthetic process 16/200 2.92 4.05e-05 5.28E-10 no
B 3 GO:0051716 cellular response to stimulus 14/200 3.17 4.29e-05 - no
B 3 GO:0009628 response to abiotic stimulus 17/200 2.29 4.97e-04 - yes
B 5 GO:0006796 phosphate metabolic process 15/200 2.26 1.11e-03 - no
B 4 GO:0006793 phosphorus metabolic process 15/200 2.26 1.12e-03 - no
B 5 GO:0006464 protein modification process 20/200 1.92 1.83e-03 - no
B 5 GO:0010556 regulation of macromolecule biosynthetic process 19/200 1.93 2.18e-03 - no
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 19/200 1.90 2.66e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 19/200 1.89 2.71e-03 5.28E-10 no
B 5 GO:0031326 regulation of cellular biosynthetic process 19/200 1.89 2.71e-03 5.28E-10 no
B 4 GO:0031323 regulation of cellular metabolic process 20/200 1.85 2.86e-03 - no
B 4 GO:0051171 regulation of nitrogen compound metabolic process 19/200 1.88 2.98e-03 - no
B 5 GO:0006350 transcription 19/200 1.86 3.25e-03 0 no
B 4 GO:0080090 regulation of primary metabolic process 19/200 1.80 4.60e-03 - no
B 4 GO:0043412 macromolecule modification 20/200 1.76 4.95e-03 - no
B 5 GO:0010468 regulation of gene expression 19/200 1.78 5.23e-03 1.01E-15 no
B 5 GO:0016070 RNA metabolic process 16/200 1.88 5.39e-03 - no
B 4 GO:0060255 regulation of macromolecule metabolic process 19/200 1.74 6.96e-03 - no
B 3 GO:0019222 regulation of metabolic process 20/200 1.70 7.47e-03 - no
C 4 GO:0031224 intrinsic to membrane 12/200 2.24 3.06e-03 - no
C 5 GO:0005634 nucleus 26/200 1.66 3.84e-03 3.64E-21 no
M 3 GO:0004871 signal transducer activity 11/200 4.89 3.16e-06 - no
M 5 GO:0016301 kinase activity 22/200 2.73 6.45e-06 5.28E-10 no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 23/200 2.51 1.72e-05 - no
M 3 GO:0003700 transcription factor activity 24/200 2.38 2.85e-05 5.28E-10 yes
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 17/200 2.74 5.71e-05 - no
M 3 GO:0005515 protein binding 31/200 1.98 8.59e-05 6.00E-32 no
M 5 GO:0030554 adenyl nucleotide binding 21/200 2.32 1.15e-04 - no
M 4 GO:0001883 purine nucleoside binding 21/200 2.32 1.15e-04 - no
M 3 GO:0001882 nucleoside binding 21/200 2.32 1.19e-04 - no
M 4 GO:0003677 DNA binding 27/200 1.95 3.01e-04 0 yes
M 4 GO:0017076 purine nucleotide binding 21/200 2.02 7.54e-04 - no
M 3 GO:0016740 transferase activity 29/200 1.77 8.99e-04 - no
M 5 GO:0032555 purine ribonucleotide binding 19/200 1.94 2.09e-03 - no
M 4 GO:0032553 ribonucleotide binding 19/200 1.94 2.09e-03 - no
PS 4 PO:0020030 cotyledon 119/200 1.62 1.75e-11 5.28E-10 yes
PS 4 PO:0009047 stem 127/200 1.51 3.81e-10 5.28E-10 yes
PS 4 PO:0009025 leaf 134/200 1.46 6.13e-10 5.28E-10 yes
PS 5 PO:0020039 leaf lamina 121/200 1.47 1.24e-08 5.28E-10 yes
PS 5 PO:0020038 petiole 114/200 1.50 1.84e-08 5.28E-10 no
PS 3 PO:0006001 phyllome 140/200 1.37 2.28e-08 - yes
PS 5 PO:0009028 microsporophyll 120/200 1.43 8.81e-08 - yes
PS 5 PO:0008037 seedling 124/200 1.40 1.25e-07 5.28E-10 yes
PS 4 PO:0000230 inflorescence meristem 113/200 1.45 1.45e-07 5.28E-10 no
PS 4 PO:0009001 fruit 133/200 1.35 2.47e-07 5.28E-10 yes
PS 3 PO:0006342 infructescence 133/200 1.35 2.47e-07 - yes
PS 3 PO:0009006 shoot 142/200 1.31 4.22e-07 5.28E-10 yes
PS 4 PO:0009026 sporophyll 124/200 1.38 4.57e-07 - yes
PS 5 PO:0008034 leaf whorl 128/200 1.36 5.48e-07 - no
PS 4 PO:0008033 phyllome whorl 128/200 1.36 5.48e-07 - no
PS 3 PO:0009013 meristem 113/200 1.41 1.08e-06 5.28E-10 no
PS 3 PO:0009010 seed 130/200 1.33 1.55e-06 5.28E-10 yes
PS 4 PO:0009009 embryo 128/200 1.32 2.75e-06 5.28E-10 yes
PS 5 PO:0009046 flower 135/200 1.30 3.08e-06 5.28E-10 yes
PS 4 PO:0009049 inflorescence 135/200 1.29 4.64e-06 5.28E-10 yes
PS 5 PO:0000013 cauline leaf 107/200 1.39 7.05e-06 - no
PS 3 PO:0009031 sepal 119/200 1.29 5.77e-05 5.28E-10 no
PS 3 PO:0009005 root 116/200 1.29 8.22e-05 5.28E-10 yes
PS 4 PO:0000037 shoot apex 108/200 1.26 6.92e-04 - yes
PG 5 PO:0007133 leaf production 125/200 1.49 1.82e-09 - yes
PG 4 PO:0007112 1 main shoot growth 125/200 1.49 1.84e-09 - yes
PG 3 PO:0007134 A vegetative growth 125/200 1.48 3.05e-09 5.28E-10 yes
PG 3 PO:0007615 flower development stages 133/200 1.27 1.82e-05 5.28E-10 yes
PG 4 PO:0007616 4 anthesis 125/200 1.29 2.42e-05 - yes
PG 5 PO:0007604 corolla developmental stages 126/200 1.28 3.76e-05 - yes
PG 4 PO:0007600 3 floral organ development stages 128/200 1.26 7.17e-05 5.28E-10 yes
PG 4 PO:0001054 4 leaf senescence stage 102/200 1.33 1.16e-04 - no
PG 3 PO:0001050 leaf development stages 102/200 1.33 1.19e-04 5.28E-10 no
KW 0 response - 52/200 2.90 3.61e-13 2.00E-12 yes
KW 0 chitin - 11/200 15.12 1.06e-11 5.28E-10 no
KW 0 ipr001471 - 10/200 11.39 1.52e-09 - yes
KW 0 defense - 18/200 5.16 2.79e-09 5.28E-10 no
KW 0 ipr002182 - 10/200 10.52 3.52e-09 - no
KW 0 ipr016177 - 10/200 10.46 3.76e-09 - yes
KW 0 integrase - 10/200 9.39 1.15e-08 - yes
KW 0 pathogenesis - 11/200 7.56 3.07e-08 8.00E-23 yes
KW 0 ipr008271 - 19/200 3.89 1.18e-07 - no
KW 0 transcriptional - 13/200 5.39 1.70e-07 2.00E-23 yes
KW 0 resistance - 14/200 4.92 2.10e-07 5.28E-10 no
KW 0 disease - 11/200 6.29 2.28e-07 5.28E-10 no
KW 0 ipr017442 - 19/200 3.61 3.92e-07 - no
KW 0 ipr001611 - 13/200 4.60 1.13e-06 - no
KW 0 ipr000719 - 20/200 3.21 1.34e-06 - no
KW 0 receptor - 17/200 3.57 1.61e-06 5.28E-10 no
KW 0 responsive - 13/200 4.34 2.22e-06 6.00E-32 yes
KW 0 ipr011009 - 20/200 3.09 2.40e-06 - no
KW 0 kinase - 27/200 2.56 2.47e-06 5.28E-10 no
KW 0 threonine - 21/200 2.80 6.93e-06 5.28E-10 no
KW 0 ipr017441 - 15/200 3.49 7.56e-06 - no
KW 0 member - 26/200 2.37 1.44e-05 5.28E-10 yes
KW 0 leucine - 16/200 3.05 2.38e-05 5.28E-10 no
KW 0 subfamily - 12/200 3.72 2.45e-05 4.06E-17 yes
KW 0 related - 49/200 1.74 2.66e-05 8.00E-23 yes
KW 0 processes - 11/200 3.63 6.03e-05 5.28E-10 no
KW 0 serine - 21/200 2.36 9.29e-05 5.28E-10 no
KW 0 phosphorylation - 16/200 2.60 1.62e-04 5.28E-10 no
KW 0 ipr002290 - 10/200 3.39 2.04e-04 - no
KW 0 active - 19/200 2.32 2.24e-04 5.28E-10 no
KW 0 tyrosine - 11/200 3.10 2.60e-04 - no
KW 0 stress - 13/200 2.77 2.91e-04 7.86E-16 yes
KW 0 stimulus - 12/200 2.79 4.29e-04 5.28E-10 no
KW 0 nucleus - 25/200 1.94 5.26e-04 3.64E-21 no
KW 0 transduction - 10/200 3.02 5.38e-04 5.28E-10 no
KW 0 transmembrane - 16/200 2.20 1.06e-03 - no
KW 0 class - 14/200 2.34 1.08e-03 5.28E-10 no
KW 0 encodes - 40/200 1.57 1.38e-03 1.59E-16 yes
KW 0 signaling - 10/200 2.69 1.40e-03 5.28E-10 no
KW 0 signal - 11/200 2.51 1.65e-03 5.28E-10 no
KW 0 amino - 17/200 1.97 2.66e-03 1.80E-15 no
KW 0 transcription - 24/200 1.65 5.60e-03 0 yes
KW 0 function - 25/200 1.60 7.10e-03 2.46E-15 no
KW 0 membrane - 38/200 1.43 8.81e-03 5.28E-10 no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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