AT1G18690.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G01240.1 0.913567 amino acid permease, putative OMAT5P000080,OMAT5P000090 [OMAT5P000080]-, [OMAT5P000090]- - -
AT5G65950.1 0.878447 unknown protein OMAT5P020470 - - -
AT3G50470.1 0.873301 HR3 (HOMOLOG OF RPW8 3) OMAT3P013390 - - -
AT3G18780.2 0.869228 ACT2 (ACTIN 2) OMAT3P007100 - OMAT3P106210 -
AT3G17650.1 0.851363 YSL5 (YELLOW STRIPE LIKE 5) OMAT3P006620 - - -
AT1G70250.1 0.836489 receptor serine/threonine kinase, putative OMAT1P019990 - - -
AT5G37850.1 0.826978 SOS4 (SALT OVERLY SENSITIVE 4) OMAT5P010100 - - -
AT5G44660.1 0.821075 unknown protein OMAT5P012470 - - -
AT3G26810.1 0.820789 AFB2 (AUXIN SIGNALING F-BOX 2) OMAT3P010120 - - -
AT3G58490.1 0.81519 phosphatidic acid phosphatase family protein / PAP2 family protein OMAT3P016410 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G01130.1 -0.77484 unknown protein - - - -
AT1G38870.1 -0.762197 transposable element gene - - - -
AT4G01530.1 -0.760091 transposable element gene - - - -
AT5G09610.1 -0.745138 APUM21 (Arabidopsis Pumilio 21) - - - -
AT2G34555.1 -0.743635 ATGA2OX3 (gibberellin 2-oxidase 3) - - - -
AT4G20365.1 -0.734435 transposable element gene - - - -
AT2G02660.1 -0.703206 FUNCTIONS IN: molecular_function unknown - - - -
AT3G32360.1 -0.702455 transposable element gene - - - -
AT5G44330.1 -0.699005 male sterility MS5 family protein - - - -
AT5G29037.1 -0.695044 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.30e-11:20 terms with high significance
1.30e-11 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0006950 response to stress 31/200 2.50 7.83e-07 - no
B 4 GO:0006952 defense response 16/200 3.51 3.78e-06 - no
B 5 GO:0006796 phosphate metabolic process 19/200 2.86 1.27e-05 - no
B 4 GO:0006793 phosphorus metabolic process 19/200 2.86 1.29e-05 - no
B 5 GO:0009416 response to light stimulus 11/200 3.83 3.63e-05 - no
B 5 GO:0006464 protein modification process 24/200 2.31 4.68e-05 - no
B 3 GO:0050789 regulation of biological process 34/200 1.97 4.74e-05 - no
B 4 GO:0009314 response to radiation 11/200 3.70 4.98e-05 - no
B 3 GO:0051707 response to other organism 11/200 3.28 1.54e-04 - no
B 3 GO:0009628 response to abiotic stimulus 18/200 2.43 1.76e-04 - no
B 4 GO:0043412 macromolecule modification 24/200 2.12 1.80e-04 - no
B 3 GO:0050794 regulation of cellular process 29/200 1.90 2.88e-04 - no
B 3 GO:0009607 response to biotic stimulus 11/200 3.04 3.07e-04 - no
B 3 GO:0042221 response to chemical stimulus 21/200 1.84 2.47e-03 - no
B 4 GO:0031323 regulation of cellular metabolic process 20/200 1.85 2.86e-03 - no
B 3 GO:0006810 transport 19/200 1.85 3.41e-03 - no
B 3 GO:0051234 establishment of localization 19/200 1.85 3.52e-03 - no
B 3 GO:0019222 regulation of metabolic process 21/200 1.78 3.63e-03 - no
B 3 GO:0044237 cellular metabolic process 63/200 1.33 4.17e-03 - no
B 4 GO:0048513 organ development 10/200 2.26 5.21e-03 - no
B 4 GO:0048731 system development 10/200 2.26 5.26e-03 - no
B 4 GO:0009889 regulation of biosynthetic process 18/200 1.79 5.94e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 18/200 1.79 5.94e-03 - no
B 4 GO:0010033 response to organic substance 13/200 1.94 7.65e-03 - no
B 3 GO:0043170 macromolecule metabolic process 52/200 1.34 8.23e-03 - no
B 4 GO:0080090 regulation of primary metabolic process 18/200 1.71 9.60e-03 - no
C 3 GO:0016020 membrane 52/200 1.90 1.17e-06 - yes
C 4 GO:0005886 plasma membrane 28/200 2.26 1.76e-05 - no
C 3 GO:0044464 cell part 118/200 1.29 6.19e-05 - yes
C 5 GO:0009536 plastid 32/200 1.73 7.66e-04 - no
M 3 GO:0004871 signal transducer activity 14/200 6.22 9.81e-09 - no
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 22/200 2.40 5.02e-05 - no
M 5 GO:0016301 kinase activity 20/200 2.49 6.22e-05 - no
M 3 GO:0005515 protein binding 30/200 1.92 1.98e-04 - no
M 5 GO:0030554 adenyl nucleotide binding 20/200 2.21 3.09e-04 - no
M 4 GO:0001883 purine nucleoside binding 20/200 2.21 3.09e-04 - no
M 3 GO:0001882 nucleoside binding 20/200 2.21 3.20e-04 - no
M 3 GO:0016740 transferase activity 30/200 1.83 4.23e-04 - yes
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 14/200 2.26 1.54e-03 - no
M 4 GO:0017076 purine nucleotide binding 20/200 1.93 1.76e-03 - no
M 5 GO:0032555 purine ribonucleotide binding 19/200 1.94 2.09e-03 - no
M 4 GO:0032553 ribonucleotide binding 19/200 1.94 2.09e-03 - no
M 3 GO:0000166 nucleotide binding 22/200 1.67 6.83e-03 - no
PS 5 PO:0020039 leaf lamina 143/200 1.73 9.57e-19 - yes
PS 5 PO:0000013 cauline leaf 137/200 1.77 2.75e-18 - yes
PS 3 PO:0009013 meristem 138/200 1.72 4.00e-17 - yes
PS 4 PO:0000230 inflorescence meristem 135/200 1.74 5.88e-17 - yes
PS 4 PO:0020030 cotyledon 130/200 1.77 1.19e-16 - yes
PS 4 PO:0009025 leaf 146/200 1.59 2.13e-15 - yes
PS 5 PO:0008037 seedling 142/200 1.61 3.78e-15 - yes
PS 4 PO:0009047 stem 138/200 1.64 4.70e-15 - yes
PS 5 PO:0020038 petiole 129/200 1.69 9.93e-15 - yes
PS 4 PO:0000037 shoot apex 135/200 1.57 7.93e-13 - yes
PS 5 PO:0008034 leaf whorl 142/200 1.51 2.25e-12 - yes
PS 4 PO:0008033 phyllome whorl 142/200 1.51 2.25e-12 - yes
PS 4 PO:0009009 embryo 144/200 1.49 2.74e-12 - yes
PS 3 PO:0009010 seed 144/200 1.47 8.88e-12 - yes
PS 3 PO:0006001 phyllome 148/200 1.44 1.30e-11 - yes
PS 4 PO:0009001 fruit 144/200 1.46 1.45e-11 - yes
PS 3 PO:0006342 infructescence 144/200 1.46 1.45e-11 - yes
PS 5 PO:0009028 microsporophyll 127/200 1.51 2.39e-10 - yes
PS 3 PO:0009006 shoot 150/200 1.38 4.14e-10 - yes
PS 4 PO:0009026 sporophyll 132/200 1.47 6.67e-10 - yes
PS 3 PO:0009005 root 131/200 1.46 1.60e-09 - yes
PS 5 PO:0009046 flower 144/200 1.38 2.35e-09 - yes
PS 4 PO:0009049 inflorescence 144/200 1.38 3.96e-09 - yes
PS 3 PO:0009032 petal 127/200 1.45 6.77e-09 - yes
PS 5 PO:0009027 megasporophyll 123/200 1.46 8.65e-09 - yes
PS 3 PO:0009031 sepal 130/200 1.41 2.71e-08 - yes
PS 5 PO:0009052 pedicel 118/200 1.45 5.51e-08 - yes
PS 3 PO:0020091 male gametophyte 114/200 1.37 3.36e-06 - yes
PG 4 PO:0001054 4 leaf senescence stage 136/200 1.77 6.32e-18 - yes
PG 3 PO:0001050 leaf development stages 136/200 1.77 6.68e-18 - yes
PG 3 PO:0007134 A vegetative growth 141/200 1.66 2.04e-16 - yes
PG 5 PO:0007133 leaf production 140/200 1.66 3.37e-16 - yes
PG 4 PO:0007112 1 main shoot growth 140/200 1.66 3.44e-16 - yes
PG 5 PO:0001081 F mature embryo stage 125/200 1.57 2.54e-11 - yes
PG 5 PO:0007604 corolla developmental stages 143/200 1.45 5.61e-11 - yes
PG 5 PO:0004507 D bilateral stage 127/200 1.54 5.90e-11 - yes
PG 5 PO:0001078 E expanded cotyledon stage 127/200 1.53 1.08e-10 - yes
PG 4 PO:0007600 3 floral organ development stages 145/200 1.42 1.42e-10 - yes
PG 3 PO:0007615 flower development stages 146/200 1.39 6.77e-10 - yes
PG 4 PO:0007631 embryo development stages 129/200 1.43 9.43e-09 - yes
PG 3 PO:0001170 seed development stages 129/200 1.43 1.30e-08 - yes
PG 4 PO:0007616 4 anthesis 135/200 1.39 1.76e-08 - yes
PG 5 PO:0001185 C globular stage 116/200 1.41 4.44e-07 - yes
KW 0 membrane - 52/200 1.95 4.80e-07 - yes
KW 0 response - 39/200 2.17 1.14e-06 - no
KW 0 resistance - 13/200 4.57 1.22e-06 - no
KW 0 amino - 24/200 2.79 1.88e-06 - no
KW 0 signal - 16/200 3.64 2.33e-06 - no
KW 0 tyrosine - 14/200 3.95 3.28e-06 - no
KW 0 phosphorylation - 19/200 3.09 4.11e-06 - no
KW 0 ipr000719 - 18/200 2.89 1.79e-05 - no
KW 0 leucine - 16/200 3.05 2.38e-05 - no
KW 0 ipr011009 - 18/200 2.78 2.95e-05 - no
KW 0 ipr001611 - 11/200 3.89 3.08e-05 - no
KW 0 plasma - 26/200 2.27 3.17e-05 - no
KW 0 defense - 12/200 3.44 5.50e-05 - no
KW 0 ipr001245 - 10/200 3.92 5.73e-05 - no
KW 0 kinase - 24/200 2.27 5.84e-05 - no
KW 0 ipr008271 - 14/200 2.87 1.29e-04 - no
KW 0 regulation - 27/200 2.04 1.40e-04 - no
KW 0 threonine - 18/200 2.40 2.05e-04 - no
KW 0 serine - 20/200 2.24 2.54e-04 - no
KW 0 class - 15/200 2.50 3.72e-04 - no
KW 0 transmembrane - 17/200 2.34 3.91e-04 - no
KW 0 ipr017441 - 12/200 2.79 4.18e-04 - no
KW 0 transduction - 10/200 3.02 5.38e-04 - no
KW 0 active - 18/200 2.20 6.02e-04 - no
KW 0 receptor - 12/200 2.52 1.07e-03 - no
KW 0 ipr017442 - 12/200 2.28 2.62e-03 - no
KW 0 chloroplast - 29/200 1.64 2.93e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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