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Gene Model | |
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Correlation Plot | |
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| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT2G35000.1 | 0.986658 | zinc finger (C3HC4-type RING finger) family protein | OMAT2P107810 | - | - | - |
| AT3G03500.1 | 0.979586 | tatD-related deoxyribonuclease family protein | OMAT3P001165 | - | - | - |
| AT4G37700.1 | 0.977498 | unknown protein | OMAT4P111430 | - | - | - |
| AT1G35250.1 | 0.976974 | thioesterase family protein | OMAT1P110780 | - | - | - |
| AT1G52060.1 | 0.975442 | FUNCTIONS IN: molecular_function unknown | OMAT1P112700 | - | - | - |
| AT5G44920.1 | 0.974447 | Toll-Interleukin-Resistance (TIR) domain-containing protein | OMAT5P012530 | - | - | - |
| AT1G13420.1 | 0.97388 | ST4B (SULFOTRANSFERASE 4B) | OMAT1P004740 | - | - | - |
| AT1G45015.1 | 0.97374 | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | OMAT1P012750 | - | - | - |
| AT3G45710.1 | 0.973627 | proton-dependent oligopeptide transport (POT) family protein | OMAT3P011770 | - | - | - |
| AT3G29410.1 | 0.973372 | terpene synthase/cyclase family protein | OMAT3P109580 | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G54770.1 | -0.676857 | THI1 | OMAT5P016150 | - | OMAT5P114270 | - |
| AT4G13880.1 | -0.662428 | AtRLP48 (Receptor Like Protein 48) | - | - | - | - |
| AT5G31927.1 | -0.642346 | transposable element gene | - | - | - | - |
| AT1G09130.1 | -0.609652 | ATP-dependent Clp protease proteolytic subunit, putative | - | - | - | - |
| AT5G32598.1 | -0.602028 | transposable element gene | - | - | - | - |
| AT3G44620.1 | -0.599107 | protein tyrosine phosphatase | OMAT3P011535 | - | - | - |
| AT4G38225.3 | -0.598052 | unknown protein | OMAT4P013310 | - | - | - |
| AT2G18580.1 | -0.593595 | transposable element gene | - | - | - | - |
| AT3G29036.1 | -0.59263 | unknown protein | - | - | - | - |
| AT1G73060.1 | -0.592053 | unknown protein | - | - | - | - |
| p-value | <= 3.53e-08 | :20 terms with high significance | |
| 3.53e-08 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006952 | defense response | 17/200 | 3.73 | 8.65e-07 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 15/200 | 2.26 | 1.11e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 15/200 | 2.26 | 1.12e-03 | - | no |
| B | 3 | GO:0006950 | response to stress | 23/200 | 1.85 | 1.51e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 68/200 | 2.80 | 1.61e-16 | - | no |
| C | 3 | GO:0044464 | cell part | 120/200 | 1.31 | 1.86e-05 | - | yes |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | no |
| M | 4 | GO:0020037 | heme binding | 15/200 | 8.57 | 3.13e-11 | - | no |
| M | 3 | GO:0046906 | tetrapyrrole binding | 15/200 | 7.87 | 1.11e-10 | - | no |
| M | 3 | GO:0019825 | oxygen binding | 12/200 | 8.64 | 1.76e-09 | - | no |
| M | 4 | GO:0004497 | monooxygenase activity | 12/200 | 6.72 | 3.53e-08 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 26/200 | 3.08 | 1.02e-07 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 33/200 | 2.43 | 6.61e-07 | - | no |
| M | 4 | GO:0043169 | cation binding | 33/200 | 2.30 | 2.35e-06 | - | no |
| M | 3 | GO:0043167 | ion binding | 33/200 | 2.30 | 2.35e-06 | - | no |
| M | 3 | GO:0016740 | transferase activity | 32/200 | 1.96 | 8.45e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 17/200 | 2.11 | 1.27e-03 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 17/200 | 1.85 | 5.10e-03 | - | no |
| PS | 3 | PO:0009005 | root | 146/200 | 1.62 | 2.24e-16 | 1.45E-16 | yes |
| KW | 0 | hypocotyl | - | 34/200 | 14.57 | 1.17e-30 | - | no |
| KW | 0 | system | - | 70/200 | 2.89 | 8.73e-18 | - | no |
| KW | 0 | endomembrane | - | 68/200 | 2.88 | 3.86e-17 | - | no |
| KW | 0 | electron | - | 20/200 | 5.62 | 9.18e-11 | 7.99E-16 | no |
| KW | 0 | ipr017973 | - | 13/200 | 9.52 | 1.23e-10 | - | no |
| KW | 0 | ipr017972 | - | 13/200 | 9.52 | 1.23e-10 | - | no |
| KW | 0 | monooxygenase | - | 14/200 | 8.20 | 2.31e-10 | - | no |
| KW | 0 | ipr001128 | - | 13/200 | 8.61 | 4.60e-10 | - | no |
| KW | 0 | carrier | - | 20/200 | 4.99 | 7.93e-10 | - | no |
| KW | 0 | oxygen | - | 15/200 | 6.51 | 1.74e-09 | - | no |
| KW | 0 | defense | - | 17/200 | 4.87 | 1.70e-08 | - | no |
| KW | 0 | ipr002401 | - | 11/200 | 7.95 | 1.75e-08 | - | no |
| KW | 0 | cytochrome | - | 14/200 | 5.73 | 2.91e-08 | - | no |
| KW | 0 | lectin | - | 11/200 | 7.47 | 3.52e-08 | - | no |
| KW | 0 | putative | - | 48/200 | 2.08 | 2.28e-07 | - | no |
| KW | 0 | active | - | 24/200 | 2.93 | 7.55e-07 | - | yes |
| KW | 0 | oxidase | - | 11/200 | 4.00 | 2.35e-05 | - | no |
| KW | 0 | ipr017441 | - | 14/200 | 3.26 | 3.09e-05 | - | no |
| KW | 0 | group | - | 16/200 | 2.97 | 3.25e-05 | - | no |
| KW | 0 | ipr008271 | - | 15/200 | 3.07 | 3.61e-05 | - | no |
| KW | 0 | class | - | 17/200 | 2.84 | 3.62e-05 | - | no |
| KW | 0 | ipr017442 | - | 15/200 | 2.85 | 8.79e-05 | - | no |
| KW | 0 | stage | - | 36/200 | 1.86 | 9.15e-05 | - | no |
| KW | 0 | response | - | 34/200 | 1.90 | 9.73e-05 | - | no |
| KW | 0 | signaling | - | 12/200 | 3.22 | 1.05e-04 | - | no |
| KW | 0 | transmembrane | - | 18/200 | 2.48 | 1.36e-04 | - | no |
| KW | 0 | ipr001611 | - | 10/200 | 3.54 | 1.42e-04 | - | no |
| KW | 0 | resistance | - | 10/200 | 3.52 | 1.50e-04 | - | no |
| KW | 0 | ipr000719 | - | 16/200 | 2.57 | 1.90e-04 | - | no |
| KW | 0 | conserved | - | 27/200 | 1.99 | 2.08e-04 | - | no |
| KW | 0 | related | - | 46/200 | 1.64 | 2.23e-04 | - | no |
| KW | 0 | region | - | 28/200 | 1.94 | 2.61e-04 | 1.08E-15 | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | petal | - | 28/200 | 1.92 | 3.08e-04 | - | no |
| KW | 0 | receptor | - | 13/200 | 2.73 | 3.34e-04 | - | no |
| KW | 0 | kinase | - | 22/200 | 2.08 | 3.89e-04 | - | no |
| KW | 0 | phosphorylation | - | 15/200 | 2.44 | 4.91e-04 | - | no |
| KW | 0 | synthase | - | 12/200 | 2.73 | 5.14e-04 | - | no |
| KW | 0 | metabolic | - | 23/200 | 2.00 | 5.28e-04 | - | yes |
| KW | 0 | serine | - | 19/200 | 2.13 | 6.59e-04 | - | no |
| KW | 0 | expansion | - | 27/200 | 1.84 | 7.66e-04 | - | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | amino | - | 18/200 | 2.09 | 1.10e-03 | 1.80E-15 | no |
| KW | 0 | process | - | 34/200 | 1.66 | 1.15e-03 | 9.34E-16 | yes |
| KW | 0 | differentiation | - | 27/200 | 1.79 | 1.17e-03 | - | no |
| KW | 0 | bilateral | - | 10/200 | 2.74 | 1.20e-03 | - | no |
| KW | 0 | threonine | - | 16/200 | 2.13 | 1.50e-03 | - | no |
| KW | 0 | member | - | 21/200 | 1.92 | 1.51e-03 | - | no |
| KW | 0 | flower | - | 16/200 | 2.09 | 1.82e-03 | - | no |
| KW | 0 | anthesis | - | 23/200 | 1.75 | 3.20e-03 | - | no |
| KW | 0 | stimulus | - | 10/200 | 2.32 | 4.26e-03 | - | no |
| KW | 0 | alpha | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| KW | 0 | oxidoreductase | - | 10/200 | 2.15 | 7.56e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |