AT1G29090.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G29080.1 0.99819 peptidase C1A papain family protein OMAT1P109180 - - -
AT1G60090.1 0.997978 BGLU4 (BETA GLUCOSIDASE 4) OMAT1P016400 - - -
AT1G43780.1 0.997773 scpl44 (serine carboxypeptidase-like 44) OMAT1P012520 - - -
AT5G05290.1 0.997632 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) OMAT5P001690 - OMAT5P101345 -
AT4G36880.1 0.997506 CP1 (CYSTEINE PROTEINASE1) OMAT4P111050 - OMAT4P012690 -
AtsnoR67 0.995689 AtsnoR67 - - - -
AtsnoR53Y 0.995469 AtsnoR53Y OMAT1P114020 - - -
AT2G26040.1 0.994587 Bet v I allergen family protein OMAT2P104870 - - -
AT3G04800.1 0.99445 ATTIM23-3 OMAT3P101550 - - -
AT5G24990.1 0.994105 unknown protein - - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G51402.1 -0.695445 unknown protein OMAT1P014180 - OMAT1P112450 -
AT4G17170.1 -0.651939 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) OMAT4P104230 - - -
AT3G01202.1 -0.647183 other RNA - - OMAT3P100100 -
AT5G44100.1 -0.642983 ckl7 (Casein Kinase I-like 7) - - - -
AT4G20260.4 -0.626609 DREPP plasma membrane polypeptide family protein OMAT4P006170 - - -
AT1G20620.1 -0.626204 CAT3 (CATALASE 3) OMAT1P007530,OMAT1P007540 [OMAT1P007530]-, [OMAT1P007540]- OMAT1P106670 -
AT2G05600.1 -0.598701 FUNCTIONS IN: molecular_function unknown - - - -
AT5G12980.1 -0.587684 rcd1-like cell differentiation protein, putative - - - -
AT3G49460.1 -0.585708 60S acidic ribosomal protein-related - - - -
AT1G37007.1 -0.57739 unknown protein - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 2.42e-12:20 terms with high significance
2.42e-12 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0042254 ribosome biogenesis 26/200 20.30 8.29e-28 - no
B 3 GO:0022613 ribonucleoprotein complex biogenesis 26/200 19.65 2.03e-27 - no
B 5 GO:0006364 rRNA processing 16/200 25.58 7.67e-20 - no
B 5 GO:0009451 RNA modification 14/200 18.48 1.64e-15 - no
B 5 GO:0006396 RNA processing 20/200 9.04 1.09e-14 - no
B 4 GO:0010467 gene expression 52/200 2.55 4.63e-11 1.29E-17 no
B 5 GO:0006412 translation 28/200 3.86 2.27e-10 - no
B 3 GO:0043170 macromolecule metabolic process 73/200 1.89 4.14e-09 - yes
B 4 GO:0044260 cellular macromolecule metabolic process 64/200 1.82 2.41e-07 - no
B 3 GO:0044238 primary metabolic process 80/200 1.61 6.84e-07 - yes
B 5 GO:0016070 RNA metabolic process 24/200 2.82 1.50e-06 - no
B 4 GO:0019538 protein metabolic process 45/200 1.95 3.39e-06 - yes
B 3 GO:0044237 cellular metabolic process 70/200 1.48 9.86e-05 - no
B 5 GO:0044267 cellular protein metabolic process 36/200 1.77 2.60e-04 - no
B 5 GO:0034645 cellular macromolecule biosynthetic process 37/200 1.72 3.81e-04 - no
B 4 GO:0009059 macromolecule biosynthetic process 37/200 1.71 4.04e-04 - no
B 5 GO:0090304 nucleic acid metabolic process 28/200 1.86 4.99e-04 - no
B 4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 30/200 1.78 7.17e-04 - no
B 5 GO:0006508 proteolysis 11/200 2.62 1.12e-03 - yes
B 4 GO:0034641 cellular nitrogen compound metabolic process 30/200 1.54 6.35e-03 - no
B 4 GO:0044249 cellular biosynthetic process 40/200 1.42 7.89e-03 - no
B 3 GO:0006807 nitrogen compound metabolic process 30/200 1.51 8.35e-03 - no
C 3 GO:0030529 ribonucleoprotein complex 40/200 11.47 1.22e-31 - no
C 3 GO:0043228 non-membrane-bounded organelle 38/200 6.38 7.92e-21 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 38/200 6.38 7.92e-21 - no
C 4 GO:0005840 ribosome 26/200 10.15 9.11e-20 - no
C 4 GO:0033279 ribosomal subunit 20/200 12.32 2.18e-17 - no
C 5 GO:0015934 large ribosomal subunit 14/200 15.21 3.07e-14 - no
C 3 GO:0044424 intracellular part 96/200 1.88 1.92e-12 - no
C 5 GO:0005730 nucleolus 16/200 9.33 2.02e-12 - no
C 3 GO:0005622 intracellular 98/200 1.84 3.88e-12 - no
C 5 GO:0022626 cytosolic ribosome 16/200 8.69 6.28e-12 - no
C 3 GO:0044446 intracellular organelle part 43/200 3.00 1.77e-11 - no
C 3 GO:0044422 organelle part 43/200 3.00 1.82e-11 - no
C 4 GO:0070013 intracellular organelle lumen 18/200 6.64 4.21e-11 - no
C 3 GO:0043233 organelle lumen 18/200 6.62 4.37e-11 - no
C 5 GO:0044445 cytosolic part 13/200 8.68 4.14e-10 - no
C 5 GO:0031981 nuclear lumen 16/200 6.62 4.39e-10 - no
C 3 GO:0043229 intracellular organelle 81/200 1.75 1.22e-08 - no
C 3 GO:0044464 cell part 130/200 1.42 1.34e-08 - yes
C 4 GO:0044428 nuclear part 16/200 4.81 4.95e-08 - no
C 4 GO:0044444 cytoplasmic part 63/200 1.81 3.22e-07 - no
C 4 GO:0005737 cytoplasm 65/200 1.74 9.99e-07 - no
C 5 GO:0005739 mitochondrion 19/200 2.97 7.44e-06 - no
C 5 GO:0005829 cytosol 14/200 3.38 2.02e-05 - no
C 4 GO:0043231 intracellular membrane-bounded organelle 66/200 1.50 1.12e-04 - no
C 3 GO:0043227 membrane-bounded organelle 66/200 1.50 1.12e-04 - no
C 5 GO:0005634 nucleus 26/200 1.66 3.84e-03 - no
M 3 GO:0003735 structural constituent of ribosome 26/200 12.01 1.15e-21 - no
M 3 GO:0016787 hydrolase activity 26/200 1.66 3.78e-03 - no
PS 4 PO:0000037 shoot apex 118/200 1.37 1.92e-06 - no
PS 3 PO:0009005 root 121/200 1.34 3.70e-06 - no
PS 5 PO:0009052 pedicel 106/200 1.30 1.58e-04 - no
PS 4 PO:0009009 embryo 119/200 1.23 5.74e-04 - no
PS 5 PO:0020038 petiole 98/200 1.29 6.24e-04 - no
PS 3 PO:0009010 seed 120/200 1.23 6.34e-04 - no
PS 4 PO:0009001 fruit 120/200 1.22 8.14e-04 - no
PS 3 PO:0006342 infructescence 120/200 1.22 8.14e-04 - no
PS 3 PO:0009031 sepal 113/200 1.22 1.35e-03 - no
PS 4 PO:0009025 leaf 112/200 1.22 1.76e-03 - no
PS 4 PO:0009049 inflorescence 124/200 1.18 2.31e-03 - no
PS 3 PO:0009032 petal 107/200 1.22 2.36e-03 - no
PS 5 PO:0009046 flower 123/200 1.18 2.75e-03 - no
PS 4 PO:0009026 sporophyll 109/200 1.21 2.80e-03 - no
PS 3 PO:0009006 shoot 127/200 1.17 3.32e-03 - no
PS 3 PO:0006001 phyllome 121/200 1.18 3.48e-03 - no
PS 5 PO:0009028 microsporophyll 102/200 1.22 3.88e-03 - no
PS 5 PO:0009027 megasporophyll 102/200 1.21 4.05e-03 - no
PS 5 PO:0008037 seedling 106/200 1.20 4.75e-03 - no
PS 5 PO:0008034 leaf whorl 112/200 1.19 4.89e-03 - no
PS 4 PO:0008033 phyllome whorl 112/200 1.19 4.89e-03 - no
PG 5 PO:0001081 F mature embryo stage 111/200 1.40 2.43e-06 - no
PG 5 PO:0001078 E expanded cotyledon stage 113/200 1.36 6.82e-06 - no
PG 5 PO:0004507 D bilateral stage 109/200 1.32 5.38e-05 - no
PG 4 PO:0007631 embryo development stages 114/200 1.27 2.57e-04 - no
PG 3 PO:0001170 seed development stages 114/200 1.26 3.16e-04 - no
PG 3 PO:0007134 A vegetative growth 106/200 1.25 9.48e-04 - no
PG 5 PO:0007604 corolla developmental stages 118/200 1.20 2.47e-03 - no
PG 5 PO:0001185 C globular stage 101/200 1.23 2.70e-03 - no
PG 5 PO:0007133 leaf production 102/200 1.21 4.34e-03 - no
PG 4 PO:0007112 1 main shoot growth 102/200 1.21 4.38e-03 - no
PG 4 PO:0007600 3 floral organ development stages 118/200 1.16 9.07e-03 - no
PG 4 PO:0007616 4 anthesis 113/200 1.17 9.49e-03 - no
KW 0 ribosomal - 31/200 10.27 2.27e-23 - no
KW 0 ribosome - 28/200 10.61 1.14e-21 - no
KW 0 constituent - 26/200 9.28 9.03e-19 - no
KW 0 structural - 26/200 7.42 2.46e-16 - no
KW 0 translation - 29/200 5.85 3.02e-15 - no
KW 0 subunit - 31/200 4.23 2.42e-12 - no
KW 0 large - 14/200 9.13 5.11e-11 - no
KW 0 cytosolic - 16/200 7.47 6.76e-11 - no
KW 0 nucleolus - 13/200 9.56 1.16e-10 - no
KW 0 mitochondrial - 14/200 6.21 1.02e-08 - no
KW 0 biogenesis - 10/200 7.36 1.41e-07 - no
KW 0 intracellular - 15/200 2.91 6.91e-05 - no
KW 0 peptidase - 11/200 2.76 7.21e-04 0 yes
KW 0 terminal - 31/200 1.61 3.00e-03 - yes
KW 0 conserved - 23/200 1.70 4.63e-03 - no
KW 0 nucleotide - 13/200 2.04 5.02e-03 - no
KW 0 mitochondrion - 11/200 2.01 9.51e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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