AT1G52880.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G66460.1 0.985901 protein kinase family protein OMAT1P116470 - - -
AT4G37690.1 0.985581 galactosyl transferase GMA12/MNN10 family protein OMAT4P013080 - - -
AT4G31060.1 0.985521 AP2 domain-containing transcription factor, putative OMAT4P010280 - - -
AT2G36307.1 0.98228 ZPR4 (LITTLE ZIPPER 4) OMAT2P108280 - - -
AT4G03050.2 0.982247 AOP3 OMAT4P001190 - - -
AT2G29045.1 0.981358 LCR62 (Low-molecular-weight cysteine-rich 62) OMAT2P006610 - - -
AT2G37460.1 0.979477 nodulin MtN21 family protein OMAT2P108790 - - -
AT3G25160.1 0.978305 ER lumen protein retaining receptor family protein OMAT3P108210 - - -
AT5G47635.1 0.977797 unknown protein OMAT5P112000 - - -
AT4G25980.1 0.977757 cationic peroxidase, putative OMAT4P008175,OMAT4P008180 [OMAT4P008175]-, [OMAT4P008180]- - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G80930.1 -0.705216 MIF4G domain-containing protein / MA3 domain-containing protein OMAT1P121530 - - -
AT4G18600.1 -0.676193 WAVE5 OMAT4P104690 - - -
AT4G18710.1 -0.66967 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) OMAT4P005730 - - -
AT5G01400.1 -0.662991 ESP4 (ENHANCED SILENCING PHENOTYPE 4) - - - -
AT5G64300.1 -0.660906 ATGCH OMAT5P019760 - - -
AT5G46210.1 -0.656959 CUL4 (CULLIN4) - - - -
AT1G19415.1 -0.646049 transposable element gene - - - -
AT5G03450.1 -0.645519 zinc finger (C3HC4-type RING finger) family protein - - - -
AT5G12120.1 -0.642722 ubiquitin-associated (UBA)/TS-N domain-containing protein OMAT5P103400 - - -
AT2G31400.1 -0.636879 pentatricopeptide (PPR) repeat-containing protein OMAT2P106630 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0006629 lipid metabolic process 21/200 4.83 5.76e-10 - no
B 4 GO:0008610 lipid biosynthetic process 14/200 6.38 7.09e-09 - no
B 3 GO:0019748 secondary metabolic process 14/200 6.05 1.44e-08 - no
B 4 GO:0044255 cellular lipid metabolic process 15/200 5.58 1.54e-08 - no
B 5 GO:0016053 organic acid biosynthetic process 12/200 5.54 3.24e-07 - no
B 4 GO:0044283 small molecule biosynthetic process 17/200 3.74 8.33e-07 - no
B 5 GO:0043436 oxoacid metabolic process 16/200 3.63 2.42e-06 - no
B 4 GO:0006082 organic acid metabolic process 16/200 3.62 2.51e-06 - no
B 4 GO:0042180 cellular ketone metabolic process 16/200 3.57 3.11e-06 - no
B 3 GO:0044281 small molecule metabolic process 24/200 2.67 3.96e-06 - no
B 4 GO:0005975 carbohydrate metabolic process 13/200 2.50 8.12e-04 - no
B 5 GO:0051252 regulation of RNA metabolic process 13/200 2.49 8.39e-04 - no
B 5 GO:0032774 RNA biosynthetic process 13/200 2.37 1.31e-03 - no
B 5 GO:0031326 regulation of cellular biosynthetic process 19/200 1.89 2.71e-03 - yes
B 4 GO:0009889 regulation of biosynthetic process 19/200 1.89 2.71e-03 - yes
B 5 GO:0006350 transcription 19/200 1.86 3.25e-03 0 yes
B 4 GO:0080090 regulation of primary metabolic process 19/200 1.80 4.60e-03 - yes
B 5 GO:0010556 regulation of macromolecule biosynthetic process 18/200 1.83 4.86e-03 - yes
B 5 GO:0019219 regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 18/200 1.80 5.83e-03 - yes
B 4 GO:0031323 regulation of cellular metabolic process 19/200 1.76 6.12e-03 - yes
B 4 GO:0051171 regulation of nitrogen compound metabolic process 18/200 1.78 6.47e-03 - yes
B 3 GO:0009058 biosynthetic process 41/200 1.41 8.47e-03 - yes
C 3 GO:0012505 endomembrane system 81/200 3.33 5.42e-25 - no
C 3 GO:0044464 cell part 132/200 1.44 2.43e-09 2.86E-16 no
M 3 GO:0016491 oxidoreductase activity 27/200 3.20 2.70e-08 - no
M 4 GO:0043169 cation binding 29/200 2.02 1.02e-04 - no
M 3 GO:0043167 ion binding 29/200 2.02 1.02e-04 2.65E-15 no
M 3 GO:0003700 transcription factor activity 21/200 2.08 5.24e-04 1.66E-16 yes
M 5 GO:0046872 metal ion binding 25/200 1.84 1.10e-03 1.25E-09 no
M 4 GO:0003677 DNA binding 23/200 1.66 6.11e-03 2.65E-15 yes
KW 0 system - 81/200 3.34 4.51e-25 2.91E-15 no
KW 0 endomembrane - 80/200 3.38 4.55e-25 - no
KW 0 stage - 51/200 2.63 2.38e-11 8.35E-16 no
KW 0 anthesis - 40/200 3.04 6.06e-11 - no
KW 0 process - 47/200 2.29 1.53e-08 9.34E-16 no
KW 0 petal - 36/200 2.47 1.42e-07 1.28E-18 no
KW 0 expansion - 36/200 2.45 1.71e-07 1.35E-16 no
KW 0 differentiation - 36/200 2.38 3.44e-07 8.30E-16 no
KW 0 metabolic - 30/200 2.61 4.62e-07 - no
KW 0 globular - 14/200 3.73 6.42e-06 2.04E-17 no
KW 0 biosynthetic - 20/200 2.80 1.10e-05 6.61E-17 no
KW 0 oxidoreductase - 15/200 3.22 2.06e-05 - no
KW 0 carrier - 13/200 3.24 5.75e-05 4.26E-16 no
KW 0 synthase - 13/200 2.96 1.48e-04 - no
KW 0 enzyme - 11/200 3.26 1.64e-04 1.25E-09 no
KW 0 inhibitor - 10/200 3.35 2.30e-04 1.16E-15 no
KW 0 encodes - 42/200 1.65 3.84e-04 1.59E-16 no
KW 0 lipid - 10/200 2.91 7.32e-04 7.13E-16 no
KW 0 leaves - 12/200 2.42 1.52e-03 5.31E-30 no
KW 0 carbohydrate - 10/200 2.55 2.10e-03 - no
KW 0 flower - 15/200 1.96 4.44e-03 1.41E-26 no
KW 0 putative - 35/200 1.52 4.58e-03 2.87E-16 no
KW 0 cotyledon - 11/200 2.09 6.98e-03 4.30E-33 no
KW 0 dependent - 22/200 1.64 8.03e-03 2.39E-15 no
KW 0 factor - 27/200 1.54 9.02e-03 0 yes
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page