AT2G01320.3 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G24140.1 0.918157 FMA (FAMA) OMAT3P107980 - - -
AT1G07440.1 0.891217 tropinone reductase, putative / tropine dehydrogenase, putative OMAT1P102230 - - -
AT2G26340.1 0.885109 unknown protein OMAT2P005640 - - -
AT5G11330.1 0.873194 monooxygenase family protein OMAT5P103150 - - -
AT3G06483.1 0.870367 PDK (PYRUVATE DEHYDROGENASE KINASE) OMAT3P102250 - - -
AT3G53920.1 0.869098 SIGC (RNA POLYMERASE SIGMA-SUBUNIT C) OMAT3P112870 - - -
AT5G49970.1 0.862715 ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) OMAT5P014320 - - -
AT4G14070.1 0.86216 AAE15 (acyl-activating enzyme 15) - - - -
AT5G36170.1 0.858625 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) OMAT5P108805 - - -
AT2G47400.1 0.857022 CP12-1 OMAT2P013610 - OMAT2P112350 -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G12970.1 -0.827922 unknown protein OMAT3P104270 - - -
AT1G72210.1 -0.805132 basic helix-loop-helix (bHLH) family protein (bHLH096) OMAT1P020840 - - -
AT1G05150.1 -0.803416 calcium-binding EF hand family protein OMAT1P101370 - - -
AT3G58390.1 -0.79334 eukaryotic release factor 1 family protein / eRF1 family protein - - - -
AT4G25540.1 -0.787444 MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3) - - - -
AT2G47570.1 -0.784951 60S ribosomal protein L18 (RPL18A) - - - -
AT4G35160.1 -0.78194 O-methyltransferase family 2 protein OMAT4P110370,OMAT4P110380 [OMAT4P110370]-, [OMAT4P110380]- OMAT4P012090 -
AT1G35450.1 -0.779044 pseudogene, similar to oj991113_30.20, similar to from GI:976278 (Arabidopsis thaliana) - - - -
AT5G45200.1 -0.778241 disease resistance protein (TIR-NBS-LRR class), putative - - - -
AT4G35390.1 -0.777081 AGF1 (AT-hook protein of GA feedback 1) OMAT4P012170 - - -

Get whole results

Over-Representation Analysis Result

p-value <= 1.21e-30:20 terms with high significance
1.21e-30 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0012501 programmed cell death 13/200 10.39 3.84e-11 - no
B 3 GO:0008219 cell death 13/200 8.97 2.70e-10 - no
B 5 GO:0006915 apoptosis 10/200 11.71 1.13e-09 - no
B 4 GO:0045087 innate immune response 12/200 6.76 3.26e-08 - no
B 3 GO:0006955 immune response 12/200 6.33 7.00e-08 - no
B 4 GO:0006952 defense response 16/200 3.51 3.78e-06 - no
B 3 GO:0006950 response to stress 28/200 2.26 1.79e-05 - no
B 4 GO:0046483 heterocycle metabolic process 11/200 4.06 2.02e-05 - no
B 4 GO:0007165 signal transduction 11/200 3.83 3.63e-05 - no
B 3 GO:0023046 signaling process 11/200 3.39 1.13e-04 - no
B 3 GO:0023060 signal transmission 11/200 3.39 1.13e-04 - no
B 3 GO:0006996 organelle organization 11/200 3.30 1.49e-04 - no
B 3 GO:0044237 cellular metabolic process 69/200 1.46 1.79e-04 - no
B 3 GO:0050789 regulation of biological process 32/200 1.85 2.42e-04 - no
B 3 GO:0050794 regulation of cellular process 28/200 1.84 6.35e-04 - no
B 3 GO:0044281 small molecule metabolic process 19/200 2.11 7.28e-04 - no
B 5 GO:0006796 phosphate metabolic process 15/200 2.26 1.11e-03 - no
B 4 GO:0006793 phosphorus metabolic process 15/200 2.26 1.12e-03 - no
B 3 GO:0009628 response to abiotic stimulus 16/200 2.16 1.32e-03 - no
B 4 GO:0042180 cellular ketone metabolic process 11/200 2.45 1.98e-03 - no
B 5 GO:0043436 oxoacid metabolic process 10/200 2.27 5.01e-03 - no
B 4 GO:0006082 organic acid metabolic process 10/200 2.27 5.11e-03 - no
B 4 GO:0019538 protein metabolic process 34/200 1.47 7.97e-03 - no
B 5 GO:0006464 protein modification process 18/200 1.73 8.56e-03 - no
B 3 GO:0009056 catabolic process 10/200 2.10 8.89e-03 - no
C 5 GO:0009536 plastid 84/200 4.55 8.33e-36 3.64E-21 yes
C 5 GO:0044434 chloroplast part 41/200 7.40 7.28e-25 - no
C 4 GO:0044435 plastid part 41/200 7.21 2.04e-24 - no
C 4 GO:0044444 cytoplasmic part 92/200 2.65 1.35e-21 - yes
C 4 GO:0005737 cytoplasm 95/200 2.54 4.42e-21 - yes
C 4 GO:0043231 intracellular membrane-bounded organelle 102/200 2.32 4.67e-20 - yes
C 3 GO:0043227 membrane-bounded organelle 102/200 2.32 4.72e-20 - yes
C 3 GO:0043229 intracellular organelle 102/200 2.21 2.07e-18 - yes
C 3 GO:0044424 intracellular part 106/200 2.08 2.37e-17 - yes
C 3 GO:0005622 intracellular 106/200 1.99 6.25e-16 - yes
C 3 GO:0044464 cell part 144/200 1.57 1.33e-14 - yes
C 3 GO:0044446 intracellular organelle part 44/200 3.07 4.62e-12 - no
C 3 GO:0044422 organelle part 44/200 3.07 4.75e-12 - no
C 5 GO:0009532 plastid stroma 18/200 7.28 8.55e-12 - no
C 4 GO:0009579 thylakoid 16/200 6.43 6.86e-10 - no
C 5 GO:0031976 plastid thylakoid 13/200 6.53 1.59e-08 - no
C 4 GO:0031984 organelle subcompartment 13/200 6.49 1.72e-08 - no
C 5 GO:0009526 plastid envelope 15/200 5.46 2.09e-08 - no
C 4 GO:0044436 thylakoid part 13/200 6.30 2.49e-08 - no
C 5 GO:0042651 thylakoid membrane 12/200 6.63 4.12e-08 - no
C 4 GO:0034357 photosynthetic membrane 12/200 6.54 4.81e-08 - no
C 5 GO:0055035 plastid thylakoid membrane 11/200 6.35 2.04e-07 - no
C 4 GO:0031967 organelle envelope 15/200 3.60 5.20e-06 - no
C 3 GO:0031975 envelope 15/200 3.60 5.20e-06 - no
C 3 GO:0016020 membrane 49/200 1.79 1.34e-05 - no
C 4 GO:0031224 intrinsic to membrane 13/200 2.42 1.08e-03 - no
C 3 GO:0044425 membrane part 16/200 2.02 2.61e-03 - no
M 3 GO:0000166 nucleotide binding 38/200 2.88 9.45e-10 - no
M 5 GO:0032555 purine ribonucleotide binding 32/200 3.26 9.58e-10 - no
M 4 GO:0032553 ribonucleotide binding 32/200 3.26 9.58e-10 - no
M 4 GO:0017076 purine nucleotide binding 32/200 3.08 3.84e-09 - no
M 5 GO:0030554 adenyl nucleotide binding 29/200 3.21 8.34e-09 - no
M 4 GO:0001883 purine nucleoside binding 29/200 3.21 8.34e-09 - no
M 3 GO:0001882 nucleoside binding 29/200 3.20 8.85e-09 - no
M 3 GO:0004871 signal transducer activity 11/200 4.89 3.16e-06 - no
M 5 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 14/200 3.15 4.63e-05 - yes
M 4 GO:0016817 hydrolase activity, acting on acid anhydrides 14/200 3.12 5.15e-05 - yes
M 4 GO:0016772 transferase activity, transferring phosphorus-containing groups 21/200 2.29 1.40e-04 - no
M 5 GO:0016301 kinase activity 19/200 2.36 1.79e-04 - no
M 3 GO:0016491 oxidoreductase activity 19/200 2.25 3.28e-04 - no
M 3 GO:0016787 hydrolase activity 28/200 1.79 9.16e-04 - yes
M 3 GO:0016740 transferase activity 28/200 1.71 1.84e-03 - no
PS 5 PO:0020038 petiole 169/200 2.22 7.19e-43 - yes
PS 5 PO:0000013 cauline leaf 169/200 2.19 6.75e-42 - yes
PS 4 PO:0020030 cotyledon 165/200 2.25 1.93e-41 - yes
PS 4 PO:0000230 inflorescence meristem 167/200 2.15 1.20e-39 - yes
PS 5 PO:0020039 leaf lamina 171/200 2.07 1.77e-39 - yes
PS 3 PO:0009013 meristem 169/200 2.10 2.67e-39 - yes
PS 5 PO:0009028 microsporophyll 170/200 2.03 2.07e-37 - yes
PS 4 PO:0009047 stem 170/200 2.02 5.13e-37 - yes
PS 4 PO:0009026 sporophyll 171/200 1.90 1.15e-33 - yes
PS 4 PO:0009025 leaf 172/200 1.87 3.85e-33 - yes
PS 5 PO:0008037 seedling 168/200 1.90 2.40e-32 - yes
PS 4 PO:0000037 shoot apex 166/200 1.93 2.78e-32 - yes
PS 5 PO:0008034 leaf whorl 171/200 1.81 1.21e-30 - yes
PS 4 PO:0008033 phyllome whorl 171/200 1.81 1.21e-30 - yes
PS 5 PO:0009027 megasporophyll 162/200 1.93 1.50e-30 - yes
PS 3 PO:0009032 petal 165/200 1.88 2.48e-30 - yes
PS 3 PO:0009031 sepal 168/200 1.82 1.71e-29 - yes
PS 4 PO:0009009 embryo 171/200 1.77 4.38e-29 - yes
PS 3 PO:0009010 seed 171/200 1.75 2.71e-28 - yes
PS 4 PO:0009001 fruit 171/200 1.74 5.81e-28 - yes
PS 3 PO:0006342 infructescence 171/200 1.74 5.81e-28 - yes
PS 3 PO:0006001 phyllome 173/200 1.69 6.82e-27 - yes
PS 3 PO:0020091 male gametophyte 154/200 1.86 2.37e-25 - yes
PS 5 PO:0009046 flower 172/200 1.65 3.44e-25 - yes
PS 5 PO:0009052 pedicel 152/200 1.87 4.87e-25 - yes
PS 4 PO:0009049 inflorescence 172/200 1.64 8.18e-25 - yes
PS 3 PO:0009006 shoot 173/200 1.59 2.85e-23 - yes
PS 3 PO:0009005 root 125/200 1.39 2.15e-07 - no
PS 3 PO:0004013 epidermal cell 27/200 2.26 2.36e-05 - no
PS 4 PO:0005679 epidermis 27/200 2.18 4.59e-05 - no
PS 3 PO:0009014 dermal tissue 27/200 2.18 4.63e-05 - no
PS 4 PO:0000293 guard cell 24/200 2.23 7.93e-05 - no
PS 4 PO:0000351 guard mother cell 24/200 2.22 8.51e-05 - no
PS 3 PO:0000070 meristemoid 24/200 2.22 8.73e-05 - no
PS 5 PO:0006016 leaf epidermis 24/200 2.16 1.33e-04 - no
PS 5 PO:0006035 shoot epidermis 24/200 2.14 1.48e-04 - no
PS 5 PO:0000349 epidermal initial 24/200 2.13 1.65e-04 - no
PS 4 PO:0004011 initial cell 24/200 2.11 1.82e-04 - no
PS 3 PO:0004010 meristematic cell 24/200 2.11 1.86e-04 - no
PG 4 PO:0001054 4 leaf senescence stage 168/200 2.18 3.09e-41 - yes
PG 3 PO:0001050 leaf development stages 168/200 2.18 3.36e-41 - yes
PG 5 PO:0007133 leaf production 171/200 2.03 4.01e-38 - yes
PG 4 PO:0007112 1 main shoot growth 171/200 2.03 4.15e-38 - yes
PG 3 PO:0007134 A vegetative growth 171/200 2.02 1.18e-37 - yes
PG 5 PO:0001185 C globular stage 160/200 1.95 2.40e-30 - yes
PG 5 PO:0001081 F mature embryo stage 157/200 1.97 7.66e-30 - yes
PG 5 PO:0001078 E expanded cotyledon stage 159/200 1.92 6.52e-29 - yes
PG 4 PO:0007616 4 anthesis 171/200 1.76 7.43e-29 - yes
PG 5 PO:0004507 D bilateral stage 158/200 1.92 1.34e-28 - yes
PG 5 PO:0007604 corolla developmental stages 171/200 1.73 1.02e-27 - yes
PG 4 PO:0007631 embryo development stages 163/200 1.81 3.71e-27 - yes
PG 3 PO:0001170 seed development stages 163/200 1.80 6.68e-27 - yes
PG 4 PO:0007600 3 floral organ development stages 172/200 1.69 1.64e-26 - yes
PG 3 PO:0007615 flower development stages 173/200 1.65 1.53e-25 - yes
KW 0 chloroplast - 85/200 4.81 3.70e-38 - yes
KW 0 ipr002182 - 13/200 13.68 9.18e-13 - no
KW 0 stroma - 16/200 8.58 7.72e-12 - no
KW 0 thylakoid - 15/200 7.05 5.58e-10 - no
KW 0 apoptosis - 10/200 11.16 1.89e-09 - no
KW 0 disease - 13/200 7.43 3.11e-09 - no
KW 0 class - 23/200 3.84 8.94e-09 - no
KW 0 envelope - 14/200 6.13 1.21e-08 - no
KW 0 light - 14/200 5.24 9.33e-08 - no
KW 0 atpase - 16/200 4.54 1.13e-07 - yes
KW 0 membrane - 53/200 1.99 1.96e-07 - no
KW 0 resistance - 14/200 4.92 2.10e-07 2.00E-15 no
KW 0 defense - 14/200 4.01 2.66e-06 - no
KW 0 reductase - 12/200 4.40 4.13e-06 - no
KW 0 ipr003593 - 10/200 4.99 6.22e-06 - yes
KW 0 nucleotide - 19/200 2.99 6.85e-06 - no
KW 0 signal - 15/200 3.42 9.94e-06 - no
KW 0 phosphate - 12/200 3.96 1.29e-05 - no
KW 0 required - 10/200 4.57 1.43e-05 - no
KW 0 response - 36/200 2.01 1.81e-05 - no
KW 0 process - 39/200 1.90 2.76e-05 - no
KW 0 transduction - 12/200 3.63 3.20e-05 - no
KW 0 dehydrogenase - 11/200 3.79 3.93e-05 - no
KW 0 metabolic - 25/200 2.18 8.65e-05 - no
KW 0 ipr001611 - 10/200 3.54 1.42e-04 - no
KW 0 kinase - 23/200 2.18 1.54e-04 - no
KW 0 oxidoreductase - 13/200 2.79 2.73e-04 - no
KW 0 dependent - 26/200 1.94 4.06e-04 - no
KW 0 stimulus - 12/200 2.79 4.29e-04 - no
KW 0 putative - 38/200 1.65 7.17e-04 3.00E-56 no
KW 0 superfamily - 10/200 2.64 1.61e-03 - no
KW 0 encodes - 39/200 1.53 2.51e-03 - no
KW 0 leucine - 12/200 2.29 2.55e-03 - no
KW 0 repeat - 23/200 1.77 2.74e-03 - no
KW 0 receptor - 11/200 2.31 3.18e-03 - no
KW 0 phosphorylation - 13/200 2.12 3.72e-03 - no
KW 0 ipr008271 - 11/200 2.25 3.92e-03 - no
KW 0 region - 24/200 1.66 5.24e-03 1.00E-10 no
KW 0 ipr011009 - 13/200 2.01 5.76e-03 - no
KW 0 transmembrane - 14/200 1.93 6.56e-03 1.00E-10 yes
KW 0 transport - 17/200 1.75 9.14e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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