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Gene Model | |
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Correlation Plot | |
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| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT4G29740.2 | 0.933158 | CKX4 (CYTOKININ OXIDASE 4) | OMAT4P009770 | - | - | - |
| AT1G13300.1 | 0.91802 | myb family transcription factor | OMAT1P004720 | - | - | - |
| AT1G30370.1 | 0.910787 | lipase class 3 family protein | OMAT1P109620 | - | - | - |
| AT4G37290.1 | 0.8969 | unknown protein | OMAT4P111230 | - | - | - |
| AT4G02850.1 | 0.891163 | phenazine biosynthesis PhzC/PhzF family protein | OMAT4P100990 | - | - | - |
| AT3G54260.1 | 0.888236 | unknown protein | OMAT3P113010 | - | - | - |
| AT2G46890.1 | 0.883425 | oxidoreductase, acting on the CH-CH group of donors | OMAT2P112140 | - | - | - |
| AT5G64120.1 | 0.883151 | peroxidase, putative | OMAT5P117460 | - | - | - |
| AT1G30750.1 | 0.881778 | unknown protein | OMAT1P109715 | - | - | - |
| AT4G12090.1 | 0.881548 | cornichon family protein | - | - | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| AT5G41830.1 | -0.768652 | F-box family protein-related | - | - | - | - |
| AT3G33555.1 | -0.72515 | transposable element gene | - | - | - | - |
| AT1G14590.1 | -0.694634 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT2G07744.1 | -0.686394 | transposable element gene | - | - | - | - |
| AT1G20750.1 | -0.670164 | helicase-related | - | - | - | - |
| AT3G13280.1 | -0.661635 | FUNCTIONS IN: molecular_function unknown | - | - | - | - |
| AT5G34833.1 | -0.661361 | transposable element gene | - | - | - | - |
| AT2G19360.1 | -0.658953 | unknown protein | - | - | - | - |
| AT4G15860.1 | -0.657085 | transposable element gene | - | - | - | - |
| AT3G07640.1 | -0.653664 | unknown protein | OMAT3P002720 | - | - | - |
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 |
:With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) |
Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006810 | transport | 22/200 | 2.15 | 2.57e-04 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 22/200 | 2.14 | 2.68e-04 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 10/200 | 2.30 | 4.58e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 68/200 | 2.80 | 1.61e-16 | - | no |
| C | 3 | GO:0044464 | cell part | 127/200 | 1.39 | 1.46e-07 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 25/200 | 2.96 | 3.71e-07 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 26/200 | 1.92 | 4.99e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 26/200 | 1.81 | 1.17e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 26/200 | 1.81 | 1.17e-03 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 12/200 | 2.14 | 4.49e-03 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 10/200 | 2.27 | 5.06e-03 | - | no |
| PS | 3 | PO:0009005 | root | 157/200 | 1.74 | 5.81e-23 | - | yes |
| PS | 5 | PO:0008037 | seedling | 107/200 | 1.21 | 3.12e-03 | - | yes |
| KW | 0 | hypocotyl | - | 31/200 | 13.28 | 7.76e-27 | - | yes |
| KW | 0 | endomembrane | - | 68/200 | 2.88 | 3.86e-17 | - | no |
| KW | 0 | system | - | 68/200 | 2.81 | 1.40e-16 | - | no |
| KW | 0 | ipr004146 | - | 10/200 | 12.50 | 5.62e-10 | - | no |
| KW | 0 | ipr011424 | - | 10/200 | 11.55 | 1.32e-09 | - | no |
| KW | 0 | stage | - | 43/200 | 2.22 | 1.71e-07 | - | no |
| KW | 0 | differentiation | - | 36/200 | 2.38 | 3.44e-07 | - | no |
| KW | 0 | expansion | - | 35/200 | 2.38 | 5.00e-07 | - | no |
| KW | 0 | petal | - | 34/200 | 2.33 | 1.19e-06 | - | no |
| KW | 0 | transport | - | 23/200 | 2.36 | 4.43e-05 | - | no |
| KW | 0 | lipid | - | 12/200 | 3.49 | 4.69e-05 | - | no |
| KW | 0 | cotyledon | - | 15/200 | 2.85 | 8.67e-05 | 3.00E-70 | no |
| KW | 0 | visible | - | 12/200 | 3.24 | 1.00e-04 | - | no |
| KW | 0 | anthesis | - | 27/200 | 2.05 | 1.27e-04 | - | yes |
| KW | 0 | putative | - | 40/200 | 1.73 | 1.80e-04 | - | no |
| KW | 0 | inhibitor | - | 10/200 | 3.35 | 2.30e-04 | - | no |
| KW | 0 | related | - | 45/200 | 1.60 | 4.29e-04 | 1.00E-130 | yes |
| KW | 0 | leaves | - | 13/200 | 2.63 | 4.95e-04 | - | no |
| KW | 0 | kinase | - | 21/200 | 1.99 | 9.37e-04 | - | no |
| KW | 0 | response | - | 31/200 | 1.73 | 9.50e-04 | - | no |
| KW | 0 | electron | - | 10/200 | 2.81 | 9.80e-04 | - | no |
| KW | 0 | integral | - | 10/200 | 2.80 | 9.94e-04 | - | no |
| KW | 0 | class | - | 14/200 | 2.34 | 1.08e-03 | - | no |
| KW | 0 | bilateral | - | 10/200 | 2.74 | 1.20e-03 | - | no |
| KW | 0 | carrier | - | 10/200 | 2.49 | 2.50e-03 | - | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | no |
| KW | 0 | intracellular | - | 11/200 | 2.13 | 6.01e-03 | - | no |
| KW | 0 | transmembrane | - | 14/200 | 1.93 | 6.56e-03 | - | no |
| KW | 0 | ipr017442 | - | 11/200 | 2.09 | 7.04e-03 | - | no |
| KW | 0 | process | - | 31/200 | 1.51 | 7.38e-03 | - | no |
| KW | 0 | oxidoreductase | - | 10/200 | 2.15 | 7.56e-03 | - | no |
| KW | 0 | stress | - | 10/200 | 2.13 | 7.91e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |