AT2G02960.3 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT2G25590.1 0.92562 agenet domain-containing protein OMAT2P005360 - - -
AT3G09470.1 0.924077 FUNCTIONS IN: molecular_function unknown OMAT3P103045,OMAT3P103040 [OMAT3P103045]-, [OMAT3P103040]- - -
AT5G56050.1 0.919656 FUNCTIONS IN: molecular_function unknown - - - -
AT4G19112.1 0.9124 CPuORF25 (Conserved peptide upstream open reading frame 25) OMAT4P104880 - - -
AT3G56950.1 0.911855 SIP2 OMAT3P113960 - - -
AT4G19110.2 0.907601 protein kinase, putative OMAT4P104880 - - -
AT1G13950.1 0.907499 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) OMAT1P004900 - - -
AT3G26720.1 0.907467 glycosyl hydrolase family 38 protein OMAT3P010050 - - -
AT5G07130.1 0.899534 LAC13 (laccase 13) OMAT5P002360 - - -
AT3G59320.1 0.896484 integral membrane protein, putative - - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT1G34967.1 -0.782704 transposable element gene - - - -
AT1G20390.1 -0.773057 transposable element gene OMAT1P007470 - - -
AT2G12190.1 -0.755288 cytochrome P450, putative - - - -
AT5G36080.1 -0.740943 unknown protein - - - -
AT4G06550.1 -0.719541 transposable element gene - - - -
AT4G07425.1 -0.717547 transposable element gene - - - -
AT3G43526.1 -0.698499 transposable element gene - - - -
AT5G01130.1 -0.697962 unknown protein - - - -
AT4G09360.1 -0.697918 disease resistance protein (NBS-LRR class), putative - - - -
AT2G06180.1 -0.693 transposable element gene - - - -

Get whole results

Over-Representation Analysis Result

p-value <= 3.05e-09:20 terms with high significance
3.05e-09 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 3 GO:0006810 transport 21/200 2.05 6.37e-04 - no
B 3 GO:0023033 signaling pathway 10/200 2.96 6.43e-04 - no
B 3 GO:0051234 establishment of localization 21/200 2.04 6.62e-04 - no
B 3 GO:0044281 small molecule metabolic process 17/200 1.89 4.13e-03 - no
B 5 GO:0006796 phosphate metabolic process 13/200 1.96 7.20e-03 - no
B 4 GO:0006793 phosphorus metabolic process 13/200 1.96 7.26e-03 - no
C 3 GO:0016020 membrane 51/200 1.86 2.70e-06 5.00E-05 no
C 3 GO:0044425 membrane part 19/200 2.40 1.43e-04 - no
C 5 GO:0016021 integral to membrane 10/200 3.25 2.91e-04 - no
C 4 GO:0005886 plasma membrane 24/200 1.94 6.65e-04 - no
C 4 GO:0031224 intrinsic to membrane 13/200 2.42 1.08e-03 - no
C 3 GO:0044464 cell part 112/200 1.22 1.42e-03 - no
C 3 GO:0012505 endomembrane system 37/200 1.52 3.37e-03 - no
M 5 GO:0016773 phosphotransferase activity, alcohol group as acceptor 13/200 2.09 4.05e-03 - no
M 3 GO:0016787 hydrolase activity 25/200 1.60 7.24e-03 - no
PS 3 PO:0009005 root 158/200 1.76 1.23e-23 - yes
PS 3 PO:0009013 meristem 136/200 1.69 4.51e-16 - yes
PS 4 PO:0000230 inflorescence meristem 133/200 1.71 6.45e-16 - yes
PS 3 PO:0009006 shoot 159/200 1.46 2.22e-14 - yes
PS 5 PO:0008037 seedling 139/200 1.57 1.13e-13 - yes
PS 5 PO:0009046 flower 153/200 1.47 2.44e-13 - yes
PS 4 PO:0009049 inflorescence 153/200 1.46 4.59e-13 - yes
PS 4 PO:0009047 stem 132/200 1.56 3.12e-12 - yes
PS 4 PO:0009025 leaf 139/200 1.51 4.93e-12 - yes
PS 4 PO:0009009 embryo 143/200 1.48 7.74e-12 - yes
PS 4 PO:0009001 fruit 144/200 1.46 1.45e-11 - yes
PS 3 PO:0006342 infructescence 144/200 1.46 1.45e-11 - yes
PS 3 PO:0009010 seed 143/200 1.46 2.45e-11 - yes
PS 3 PO:0006001 phyllome 146/200 1.42 9.74e-11 - yes
PS 3 PO:0009031 sepal 133/200 1.44 2.15e-09 - yes
PS 5 PO:0020039 leaf lamina 123/200 1.49 2.31e-09 - yes
PS 3 PO:0020091 male gametophyte 123/200 1.48 3.59e-09 - yes
PS 4 PO:0009026 sporophyll 127/200 1.41 4.63e-08 - yes
PS 5 PO:0008034 leaf whorl 131/200 1.39 5.54e-08 - yes
PS 4 PO:0008033 phyllome whorl 131/200 1.39 5.54e-08 - yes
PS 5 PO:0009027 megasporophyll 120/200 1.43 9.55e-08 - yes
PS 5 PO:0000013 cauline leaf 107/200 1.39 7.05e-06 - yes
PS 4 PO:0000037 shoot apex 116/200 1.35 7.28e-06 - yes
PS 3 PO:0009032 petal 117/200 1.33 1.08e-05 - yes
PS 5 PO:0009028 microsporophyll 113/200 1.35 1.19e-05 - yes
PS 3 PO:0000034 vascular system 12/200 3.67 2.80e-05 - no
PS 5 PO:0020038 petiole 100/200 1.31 2.22e-04 - yes
PS 5 PO:0009052 pedicel 105/200 1.29 2.70e-04 - yes
PS 4 PO:0020030 cotyledon 94/200 1.28 1.11e-03 - yes
PG 3 PO:0007615 flower development stages 154/200 1.47 1.59e-13 - yes
PG 4 PO:0007600 3 floral organ development stages 150/200 1.47 8.02e-13 - yes
PG 5 PO:0007604 corolla developmental stages 144/200 1.46 2.07e-11 - yes
PG 3 PO:0007134 A vegetative growth 125/200 1.48 3.05e-09 - yes
PG 4 PO:0007616 4 anthesis 137/200 1.41 3.18e-09 - yes
PG 5 PO:0007133 leaf production 124/200 1.47 4.29e-09 - yes
PG 4 PO:0007112 1 main shoot growth 124/200 1.47 4.35e-09 - yes
PG 4 PO:0001054 4 leaf senescence stage 108/200 1.40 2.89e-06 - yes
PG 3 PO:0001050 leaf development stages 108/200 1.40 2.97e-06 - yes
PG 4 PO:0007631 embryo development stages 120/200 1.33 7.47e-06 - yes
PG 3 PO:0001170 seed development stages 120/200 1.33 9.62e-06 - yes
PG 5 PO:0001185 C globular stage 108/200 1.32 7.93e-05 - yes
PG 5 PO:0004507 D bilateral stage 106/200 1.29 2.84e-04 - yes
PG 5 PO:0001081 F mature embryo stage 103/200 1.29 2.98e-04 - yes
PG 5 PO:0001078 E expanded cotyledon stage 106/200 1.28 3.97e-04 - yes
PG 5 PO:0007605 androecium developmental stages 45/200 1.54 1.05e-03 - yes
KW 0 membrane - 49/200 1.84 6.08e-06 5.00E-05 no
KW 0 major - 12/200 4.20 6.88e-06 - no
KW 0 petal - 30/200 2.06 5.58e-05 - no
KW 0 expansion - 30/200 2.04 6.40e-05 - no
KW 0 stage - 36/200 1.86 9.15e-05 - no
KW 0 differentiation - 30/200 1.98 1.07e-04 - no
KW 0 transmembrane - 18/200 2.48 1.36e-04 - no
KW 0 transporter - 17/200 2.45 2.33e-04 - no
KW 0 tyrosine - 11/200 3.10 2.60e-04 - no
KW 0 visible - 11/200 2.97 3.83e-04 - no
KW 0 signaling - 11/200 2.95 4.00e-04 - no
KW 0 hydrolase - 17/200 2.33 4.14e-04 - no
KW 0 plasma - 23/200 2.01 5.12e-04 - no
KW 0 threonine - 17/200 2.27 5.72e-04 - no
KW 0 integral - 10/200 2.80 9.94e-04 - no
KW 0 phosphorylation - 14/200 2.28 1.40e-03 - no
KW 0 serine - 18/200 2.02 1.63e-03 - no
KW 0 class - 13/200 2.17 2.96e-03 - no
KW 0 ipr017441 - 10/200 2.33 4.17e-03 - no
KW 0 ipr000719 - 13/200 2.09 4.19e-03 - no
KW 0 transport - 18/200 1.85 4.26e-03 - no
KW 0 leaves - 11/200 2.22 4.36e-03 - no
KW 0 signal - 10/200 2.28 4.91e-03 - no
KW 0 ipr011009 - 13/200 2.01 5.76e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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