AT2G46810.1 (↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT3G06140.1 0.921429 zinc finger (C3HC4-type RING finger) family protein - - - -
AT5G43870.1 0.920882 phosphoinositide binding OMAT5P110650 - - -
AT1G13250.1 0.911149 GATL3 (Galacturonosyltransferase-like 3) OMAT1P104240 - - -
AT2G01760.1 0.899143 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) OMAT2P000225,OMAT2P000230 [OMAT2P000225]-, [OMAT2P000230]- - -
AT3G03980.1 0.889273 short-chain dehydrogenase/reductase (SDR) family protein OMAT3P001330 - - -
AT5G48485.1 0.883722 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1) OMAT5P112330 - - -
AT5G22580.1 0.882342 FUNCTIONS IN: molecular_function unknown OMAT5P007610 - - -
AT1G29500.1 0.873143 auxin-responsive protein, putative - - - -
AT4G27440.1 0.873013 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B) OMAT4P008750 - OMAT4P107610 -
AT2G43550.1 0.870749 trypsin inhibitor, putative OMAT2P011990 - - -
Negatively Correlated Genes
GensPCC Definition Overlap geneDefinition Overlap gene(antisense)Definition
AT5G36935.1 -0.820603 transposable element gene - - - -
AT5G26600.2 -0.814465 catalytic/ pyridoxal phosphate binding OMAT5P009080 - - -
AT1G78870.1 -0.807651 UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) OMAT1P023480 - - -
AT2G31585.1 -0.803378 other RNA - - - -
AT2G19140.1 -0.78827 transposable element gene - - - -
AT4G20850.1 -0.78533 TPP2 (TRIPEPTIDYL PEPTIDASE II) OMAT4P105250 - - -
AT5G07470.1 -0.778012 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) OMAT5P102060 - - -
AT2G45140.1 -0.777165 PVA12 (PLANT VAP HOMOLOG 12) OMAT2P012610 - - -
AT1G65820.3 -0.769864 microsomal glutathione s-transferase, putative - - - -
AT1G29970.2 -0.768759 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) OMAT1P109460,OMAT1P109470 [OMAT1P109460]-, [OMAT1P109470]- - -

Get whole results

Over-Representation Analysis Result

p-value <= 7.74e-35:20 terms with high significance
7.74e-35 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1) Depth of the term in ontology tree ID/Term Description Number of genes Over-Representative rate (*2) p-value (*3) PosMed p-value (*4)
(Link to PosMed)		 Found on gene annotation
B 4 GO:0015979 photosynthesis 14/200 17.50 3.73e-15 - no
B 4 GO:0005975 carbohydrate metabolic process 20/200 3.84 7.27e-08 - no
B 4 GO:0006091 generation of precursor metabolites and energy 10/200 6.25 7.14e-07 - no
B 4 GO:0044262 cellular carbohydrate metabolic process 12/200 3.88 1.59e-05 - no
B 3 GO:0009628 response to abiotic stimulus 19/200 2.56 5.93e-05 - no
B 4 GO:0009314 response to radiation 10/200 3.37 2.18e-04 - no
B 3 GO:0044237 cellular metabolic process 66/200 1.40 9.49e-04 - yes
B 4 GO:0006629 lipid metabolic process 11/200 2.53 1.53e-03 - no
B 3 GO:0042221 response to chemical stimulus 21/200 1.84 2.47e-03 - no
B 3 GO:0006950 response to stress 22/200 1.77 3.23e-03 - no
B 3 GO:0009056 catabolic process 11/200 2.31 3.25e-03 - no
B 3 GO:0044238 primary metabolic process 64/200 1.29 8.30e-03 - yes
C 5 GO:0044434 chloroplast part 50/200 9.03 2.54e-34 - no
C 4 GO:0044435 plastid part 50/200 8.79 9.24e-34 - no
C 4 GO:0009579 thylakoid 35/200 14.06 5.86e-31 - no
C 5 GO:0009536 plastid 77/200 4.17 6.54e-30 - no
C 5 GO:0031976 plastid thylakoid 31/200 15.57 5.04e-29 - no
C 4 GO:0031984 organelle subcompartment 31/200 15.48 6.11e-29 - no
C 4 GO:0044436 thylakoid part 31/200 15.03 1.57e-28 - no
C 5 GO:0055035 plastid thylakoid membrane 28/200 16.17 7.15e-27 - no
C 5 GO:0042651 thylakoid membrane 28/200 15.47 2.57e-26 - no
C 4 GO:0034357 photosynthetic membrane 28/200 15.26 3.77e-26 - no
C 3 GO:0044446 intracellular organelle part 60/200 4.18 5.88e-23 - no
C 3 GO:0044422 organelle part 60/200 4.18 6.14e-23 - no
C 4 GO:0044444 cytoplasmic part 88/200 2.53 3.64e-19 - no
C 3 GO:0043229 intracellular organelle 102/200 2.21 2.07e-18 - yes
C 3 GO:0044464 cell part 150/200 1.64 8.39e-18 - yes
C 4 GO:0043231 intracellular membrane-bounded organelle 98/200 2.23 8.63e-18 - yes
C 3 GO:0043227 membrane-bounded organelle 98/200 2.23 8.71e-18 - yes
C 4 GO:0005737 cytoplasm 89/200 2.38 1.43e-17 - no
C 5 GO:0009526 plastid envelope 24/200 8.73 7.30e-17 - no
C 3 GO:0044424 intracellular part 104/200 2.04 2.66e-16 - yes
C 3 GO:0005622 intracellular 105/200 1.97 2.00e-15 - yes
C 4 GO:0031967 organelle envelope 24/200 5.76 9.07e-13 - no
C 3 GO:0031975 envelope 24/200 5.76 9.07e-13 - no
C 5 GO:0009532 plastid stroma 19/200 7.69 9.23e-13 - no
C 3 GO:0016020 membrane 58/200 2.12 4.55e-09 - no
C 3 GO:0048046 apoplast 13/200 6.59 1.42e-08 - no
C 3 GO:0043234 protein complex 22/200 3.36 1.95e-07 - no
C 4 GO:0005618 cell wall 10/200 3.01 5.55e-04 - no
C 3 GO:0030312 external encapsulating structure 10/200 2.99 5.89e-04 - no
C 3 GO:0044425 membrane part 17/200 2.15 1.05e-03 - no
C 3 GO:0043228 non-membrane-bounded organelle 13/200 2.18 2.83e-03 - no
C 4 GO:0043232 intracellular non-membrane-bounded organelle 13/200 2.18 2.83e-03 - no
M 4 GO:0016798 hydrolase activity, acting on glycosyl bonds 14/200 5.27 8.80e-08 - no
M 5 GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 10/200 4.04 4.43e-05 - no
M 3 GO:0016491 oxidoreductase activity 20/200 2.37 1.19e-04 - no
M 4 GO:0016757 transferase activity, transferring glycosyl groups 10/200 3.43 1.86e-04 - no
M 3 GO:0016787 hydrolase activity 28/200 1.79 9.16e-04 - no
PS 5 PO:0020038 petiole 170/200 2.23 7.62e-44 - no
PS 5 PO:0020039 leaf lamina 174/200 2.11 2.16e-42 - no
PS 5 PO:0009052 pedicel 172/200 2.12 2.36e-41 - no
PS 5 PO:0000013 cauline leaf 168/200 2.17 5.98e-41 - no
PS 4 PO:0009025 leaf 180/200 1.96 8.47e-41 - no
PS 5 PO:0009027 megasporophyll 171/200 2.04 2.99e-38 - no
PS 3 PO:0009031 sepal 177/200 1.92 1.87e-37 - no
PS 3 PO:0009032 petal 173/200 1.97 3.06e-37 - no
PS 4 PO:0000037 shoot apex 169/200 1.96 7.74e-35 - no
PS 5 PO:0008037 seedling 170/200 1.93 4.63e-34 - no
PS 3 PO:0006001 phyllome 181/200 1.76 5.50e-34 - no
PS 4 PO:0009026 sporophyll 171/200 1.90 1.15e-33 - no
PS 4 PO:0009009 embryo 176/200 1.82 2.07e-33 - no
PS 5 PO:0008034 leaf whorl 174/200 1.85 3.05e-33 - no
PS 4 PO:0008033 phyllome whorl 174/200 1.85 3.05e-33 - no
PS 5 PO:0009028 microsporophyll 165/200 1.97 4.72e-33 - no
PS 4 PO:0020030 cotyledon 155/200 2.11 7.06e-33 - no
PS 3 PO:0009010 seed 176/200 1.80 1.45e-32 - no
PS 4 PO:0009001 fruit 176/200 1.79 3.26e-32 - no
PS 3 PO:0006342 infructescence 176/200 1.79 3.26e-32 - no
PS 3 PO:0009013 meristem 159/200 1.98 8.42e-31 - no
PS 5 PO:0009046 flower 178/200 1.71 3.56e-30 - no
PS 3 PO:0009006 shoot 181/200 1.67 6.03e-30 - no
PS 4 PO:0009049 inflorescence 178/200 1.70 9.14e-30 - no
PS 4 PO:0000230 inflorescence meristem 154/200 1.98 6.29e-29 - no
PS 4 PO:0009047 stem 159/200 1.88 5.61e-28 - no
PS 3 PO:0020091 male gametophyte 152/200 1.83 5.39e-24 - no
PS 4 PO:0000293 guard cell 37/200 3.44 9.74e-12 - no
PS 4 PO:0000351 guard mother cell 37/200 3.42 1.11e-11 - no
PS 3 PO:0000070 meristemoid 37/200 3.42 1.17e-11 - no
PS 5 PO:0006016 leaf epidermis 37/200 3.33 2.56e-11 - no
PS 5 PO:0006035 shoot epidermis 37/200 3.30 3.14e-11 - no
PS 5 PO:0000349 epidermal initial 37/200 3.28 3.85e-11 - no
PS 4 PO:0004011 initial cell 37/200 3.26 4.63e-11 - no
PS 3 PO:0004010 meristematic cell 37/200 3.26 4.85e-11 - no
PS 3 PO:0004013 epidermal cell 38/200 3.19 4.94e-11 - no
PS 4 PO:0005679 epidermis 38/200 3.07 1.49e-10 - no
PS 3 PO:0009014 dermal tissue 38/200 3.07 1.51e-10 - no
PS 3 PO:0009005 root 123/200 1.37 9.29e-07 - no
PG 5 PO:0001185 C globular stage 172/200 2.10 9.76e-41 - no
PG 5 PO:0001081 F mature embryo stage 168/200 2.11 4.95e-39 - no
PG 5 PO:0007133 leaf production 171/200 2.03 4.01e-38 - no
PG 4 PO:0007112 1 main shoot growth 171/200 2.03 4.15e-38 - no
PG 5 PO:0004507 D bilateral stage 169/200 2.05 1.14e-37 - no
PG 3 PO:0007134 A vegetative growth 171/200 2.02 1.18e-37 - no
PG 4 PO:0001054 4 leaf senescence stage 164/200 2.13 1.36e-37 - no
PG 3 PO:0001050 leaf development stages 164/200 2.13 1.47e-37 - no
PG 5 PO:0001078 E expanded cotyledon stage 169/200 2.04 3.58e-37 - no
PG 4 PO:0007631 embryo development stages 174/200 1.93 2.43e-36 - no
PG 3 PO:0001170 seed development stages 174/200 1.92 4.77e-36 - no
PG 4 PO:0007616 4 anthesis 175/200 1.80 2.90e-32 - no
PG 5 PO:0007604 corolla developmental stages 176/200 1.78 5.94e-32 - no
PG 4 PO:0007600 3 floral organ development stages 177/200 1.74 1.04e-30 - no
PG 3 PO:0007615 flower development stages 178/200 1.70 1.03e-29 - no
KW 0 chloroplast - 68/200 3.85 4.22e-24 - no
KW 0 thylakoid - 25/200 11.74 1.15e-20 - no
KW 0 photosystem - 16/200 26.60 3.79e-20 - no
KW 0 components - 13/200 8.01 1.19e-09 - no
KW 0 envelope - 15/200 6.56 1.55e-09 - no
KW 0 encodes - 53/200 2.08 4.92e-08 - no
KW 0 stroma - 12/200 6.44 5.81e-08 - no
KW 0 light - 14/200 5.24 9.33e-08 - no
KW 0 glucose - 10/200 6.76 3.30e-07 - no
KW 0 reductase - 13/200 4.77 7.34e-07 - no
KW 0 apoplast - 10/200 5.96 1.14e-06 - no
KW 0 chain - 13/200 4.30 2.50e-06 - no
KW 0 process - 40/200 1.95 1.19e-05 - no
KW 0 mutant - 10/200 4.59 1.36e-05 - no
KW 0 subunit - 20/200 2.73 1.62e-05 - no
KW 0 membrane - 47/200 1.77 2.90e-05 - no
KW 0 catalytic - 24/200 2.36 3.18e-05 - no
KW 0 dehydrogenase - 11/200 3.79 3.93e-05 - no
KW 0 glycosyl - 12/200 2.81 3.91e-04 - no
KW 0 biosynthetic - 16/200 2.24 8.94e-04 - no
KW 0 complex - 18/200 2.13 9.00e-04 - no
KW 0 hydrolase - 16/200 2.19 1.12e-03 - no
KW 0 metabolic - 22/200 1.92 1.22e-03 - no
KW 0 response - 30/200 1.67 1.90e-03 - no
KW 0 oxidoreductase - 11/200 2.36 2.70e-03 - no
KW 0 stimulus - 10/200 2.32 4.26e-03 - no
KW 0 transport - 18/200 1.85 4.26e-03 - no
(*1) [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2) ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3) P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4) PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
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